Wall clock time and date at job start Tue Mar 31 2020 14:52:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 110.78437 * 2 1
4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3
5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1
6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2
7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4
8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4
9 9 C 1.50702 * 109.46927 * 180.02562 * 8 6 5
10 10 C 1.38414 * 120.02641 * 269.72704 * 9 8 6
11 11 F 1.35102 * 120.01107 * 359.97438 * 10 9 8
12 12 C 1.38474 * 119.97651 * 179.74534 * 10 9 8
13 13 C 1.38215 * 120.02344 * 0.50904 * 12 10 9
14 14 C 1.38210 * 120.04729 * 359.76735 * 13 12 10
15 15 C 1.38421 * 120.02192 * 90.00266 * 9 8 6
16 16 F 1.35094 * 120.01577 * 359.97438 * 15 9 8
17 17 C 1.47426 * 108.70517 * 358.86539 * 5 4 2
18 18 C 1.54914 * 104.82992 * 24.12623 * 17 5 4
19 19 H 1.09000 * 111.00339 * 81.07133 * 18 17 5
20 20 N 1.46505 * 111.00202 * 204.91694 * 18 17 5
21 21 C 1.36935 * 120.00217 * 273.54861 * 20 18 17
22 22 H 1.08006 * 119.99642 * 359.97438 * 21 20 18
23 23 C 1.38808 * 120.00007 * 180.02562 * 21 20 18
24 24 N 1.31620 * 120.00356 * 359.97438 * 23 21 20
25 25 Si 1.86801 * 119.99913 * 180.02562 * 23 21 20
26 26 H 1.48500 * 109.47230 * 359.97438 * 25 23 21
27 27 H 1.48491 * 109.47384 * 120.00033 * 25 23 21
28 28 H 1.48504 * 109.46904 * 239.99911 * 25 23 21
29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3
30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3
31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3
32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1
33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1
34 34 H 1.08996 * 109.47275 * 300.00392 * 8 6 5
35 35 H 1.09002 * 109.46941 * 60.00490 * 8 6 5
36 36 H 1.07998 * 119.98959 * 180.22924 * 12 10 9
37 37 H 1.07995 * 119.97382 * 179.74681 * 13 12 10
38 38 H 1.08000 * 119.98172 * 179.97438 * 14 13 12
39 39 H 1.08999 * 110.36956 * 142.96999 * 17 5 4
40 40 H 1.09001 * 110.36709 * 265.18192 * 17 5 4
41 41 H 0.96998 * 119.99743 * 93.55096 * 20 18 17
42 42 H 0.96989 * 120.00348 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9167 1.0191 0.0000
4 6 2.0760 -0.7913 -1.2072
5 7 3.2438 -1.5535 -0.7414
6 6 3.9877 -2.3885 -1.4937
7 8 3.7119 -2.5604 -2.6621
8 6 5.1630 -3.1076 -0.8831
9 6 5.8210 -3.9718 -1.9278
10 6 5.4115 -5.2826 -2.1006
11 9 4.4220 -5.7883 -1.3322
12 6 6.0132 -6.0742 -3.0644
13 6 7.0295 -5.5589 -3.8466
14 6 7.4431 -4.2518 -3.6711
15 6 6.8392 -3.4569 -2.7115
16 9 7.2433 -2.1792 -2.5406
17 6 3.4656 -1.2541 0.6849
18 6 2.0831 -0.7972 1.2139
19 1 1.4480 -1.6542 1.4382
20 7 2.2294 0.0667 2.3880
21 6 2.3264 -0.4860 3.6370
22 1 2.2947 -1.5590 3.7567
23 6 2.4645 0.3326 4.7495
24 7 2.5027 1.6401 4.6038
25 14 2.5976 -0.4215 6.4533
26 1 2.5290 -1.9011 6.3465
27 1 3.8905 -0.0286 7.0690
28 1 1.4784 0.0657 7.2990
29 1 -0.3633 -1.0272 0.0321
30 1 -0.3634 0.5414 0.8735
31 1 -0.3633 0.4858 -0.9056
32 1 2.3741 -0.1026 -1.9977
33 1 1.3121 -1.4741 -1.5791
34 1 5.8817 -2.3780 -0.5104
35 1 4.8185 -3.7322 -0.0589
36 1 5.6914 -7.0959 -3.2018
37 1 7.5010 -6.1781 -4.5953
38 1 8.2376 -3.8504 -4.2827
39 1 3.7975 -2.1479 1.2131
40 1 4.1987 -0.4550 0.7952
41 1 2.2575 1.0303 2.2805
42 1 2.5996 2.2121 5.3810
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000939040767.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:52:48
Heat of formation + Delta-G solvation = -106.510734 kcal
Electronic energy + Delta-G solvation = -27365.481776 eV
Core-core repulsion = 23173.829353 eV
Total energy + Delta-G solvation = -4191.652423 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-50.08610 -50.07621 -41.31072 -39.84705 -38.86184 -35.88586 -34.38288 -33.70675
-32.50866 -31.28116 -29.39549 -29.10891 -26.97281 -25.87506 -23.89944 -23.56643
-22.80610 -21.36708 -20.40086 -19.17984 -19.10895 -18.46958 -18.31437 -17.51857
-17.11787 -16.83905 -16.63722 -16.42655 -16.35726 -16.23146 -15.61253 -15.48252
-15.33718 -14.67147 -14.54401 -14.42962 -14.30721 -14.17528 -13.77833 -13.48899
-13.23413 -13.09349 -12.94790 -12.91428 -12.87216 -12.65413 -12.40702 -12.20812
-12.11447 -12.01164 -11.71936 -11.41349 -11.19229 -10.95146 -9.93168 -9.77444
-9.75090 -9.05359 -7.94638 -5.24512 -0.07285 -0.03045 1.44954 1.49774
1.51054 1.59988 1.86795 2.39086 2.56916 2.86623 3.29333 3.34202
3.37594 3.39022 3.58988 3.74843 3.80572 3.87319 3.91603 4.14584
4.20641 4.27737 4.32257 4.35138 4.44281 4.54579 4.63902 4.78463
4.82109 4.84439 4.86968 5.01220 5.04135 5.06330 5.09757 5.16618
5.18631 5.31560 5.43359 5.55453 5.76717 6.26179 6.39424 6.97714
7.34334 8.04691 8.29580 9.28298
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.015053 B = 0.003130 C = 0.002907
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1859.667533 B = 8944.549908 C = 9628.242491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.102 4.102
3 H 0.080 0.920
4 C 0.119 3.881
5 N -0.612 5.612
6 C 0.529 3.471
7 O -0.575 6.575
8 C -0.097 4.097
9 C -0.156 4.156
10 C 0.115 3.885
11 F -0.141 7.141
12 C -0.158 4.158
13 C -0.050 4.050
14 C -0.159 4.159
15 C 0.114 3.886
16 F -0.142 7.142
17 C 0.082 3.918
18 C 0.172 3.828
19 H 0.063 0.937
20 N -0.720 5.720
21 C -0.240 4.240
22 H 0.079 0.921
23 C -0.068 4.068
24 N -0.966 5.966
25 Si 0.968 3.032
26 H -0.265 1.265
27 H -0.295 1.295
28 H -0.296 1.296
29 H 0.059 0.941
30 H 0.050 0.950
31 H 0.074 0.926
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.116 0.884
35 H 0.119 0.881
36 H 0.169 0.831
37 H 0.188 0.812
38 H 0.168 0.832
39 H 0.077 0.923
40 H 0.063 0.937
41 H 0.377 0.623
42 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.097 -14.341 -17.645 24.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.122 4.122
3 H 0.099 0.901
4 C -0.004 4.004
5 N -0.345 5.345
6 C 0.318 3.682
7 O -0.456 6.456
8 C -0.137 4.137
9 C -0.158 4.158
10 C 0.096 3.904
11 F -0.119 7.119
12 C -0.177 4.177
13 C -0.067 4.067
14 C -0.177 4.177
15 C 0.095 3.905
16 F -0.120 7.120
17 C -0.043 4.043
18 C 0.061 3.939
19 H 0.081 0.919
20 N -0.359 5.359
21 C -0.372 4.372
22 H 0.097 0.903
23 C -0.261 4.261
24 N -0.616 5.616
25 Si 0.797 3.203
26 H -0.190 1.190
27 H -0.223 1.223
28 H -0.224 1.224
29 H 0.078 0.922
30 H 0.069 0.931
31 H 0.093 0.907
32 H 0.085 0.915
33 H 0.090 0.910
34 H 0.134 0.866
35 H 0.137 0.863
36 H 0.186 0.814
37 H 0.205 0.795
38 H 0.186 0.814
39 H 0.096 0.904
40 H 0.081 0.919
41 H 0.210 0.790
42 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges 7.955 -14.570 -18.100 24.559
hybrid contribution -0.115 0.779 1.572 1.758
sum 7.840 -13.791 -16.528 22.909
Atomic orbital electron populations
1.21614 0.92478 1.02262 1.02234 1.22432 0.97573 0.99107 0.93070
0.90142 1.22001 0.87302 0.94396 0.96701 1.48518 1.30161 1.43629
1.12164 1.20401 0.83538 0.78614 0.85599 1.90650 1.71901 1.65472
1.17561 1.20469 0.95872 0.99413 0.97925 1.19420 0.99938 0.94732
1.01743 1.17524 0.88344 0.91530 0.93002 1.91492 1.59420 1.87107
1.73915 1.21587 0.98492 1.02056 0.95561 1.21357 0.93818 0.93934
0.97610 1.21583 1.02686 0.95151 0.98316 1.17538 0.95767 0.79533
0.97653 1.91488 1.89433 1.36461 1.94644 1.23264 1.01318 1.00883
0.78861 1.21543 0.92561 0.93467 0.86303 0.91908 1.42386 1.87000
1.05126 1.01343 1.19627 1.40654 0.92221 0.84705 0.90298 1.25485
1.03473 0.95760 1.01377 1.69803 1.58750 1.03289 1.29729 0.85162
0.76506 0.78167 0.80444 1.18951 1.22260 1.22374 0.92213 0.93074
0.90723 0.91462 0.90960 0.86561 0.86345 0.81367 0.79520 0.81424
0.90444 0.91854 0.79005 0.94014
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.50 9.14 71.98 0.66 -2.84 16
2 C -0.10 -3.14 3.19 -9.52 -0.03 -3.17 16
3 H 0.08 2.57 8.00 -2.39 -0.02 2.55 16
4 C 0.12 3.54 6.46 86.73 0.56 4.10 16
5 N -0.61 -19.71 3.33 -811.78 -2.70 -22.41 16
6 C 0.53 17.59 7.84 87.66 0.69 18.28 16
7 O -0.58 -22.21 16.36 -3.03 -0.05 -22.26 16
8 C -0.10 -2.68 4.49 29.10 0.13 -2.55 16
9 C -0.16 -4.05 4.38 -19.78 -0.09 -4.14 16
10 C 0.12 2.71 7.24 22.37 0.16 2.88 16
11 F -0.14 -3.69 16.47 44.97 0.74 -2.95 16
12 C -0.16 -2.48 10.03 22.32 0.22 -2.25 16
13 C -0.05 -0.57 10.04 22.26 0.22 -0.35 16
14 C -0.16 -2.50 10.02 22.32 0.22 -2.28 16
15 C 0.11 2.71 7.24 22.37 0.16 2.88 16
16 F -0.14 -3.78 16.48 44.97 0.74 -3.04 16
17 C 0.08 2.77 6.39 86.86 0.55 3.32 16
18 C 0.17 6.30 3.14 46.47 0.15 6.45 16
19 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16
20 N -0.72 -33.44 5.28 -315.95 -1.67 -35.11 16
21 C -0.24 -12.44 9.98 84.03 0.84 -11.60 16
22 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16
23 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16
24 N -0.97 -56.59 13.06 21.65 0.28 -56.31 16
25 Si 0.97 44.31 29.55 68.60 2.03 46.34 16
26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16
27 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16
28 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16
29 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16
30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16
31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
33 H 0.07 2.08 7.82 -2.39 -0.02 2.06 16
34 H 0.12 3.00 7.64 -2.39 -0.02 2.98 16
35 H 0.12 3.01 7.34 -2.39 -0.02 2.99 16
36 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16
37 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16
38 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16
39 H 0.08 2.48 7.48 -2.39 -0.02 2.46 16
40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16
41 H 0.38 18.99 7.72 -92.71 -0.72 18.27 16
42 H 0.25 14.35 8.31 -92.72 -0.77 13.58 16
Total: -1.00 -67.67 361.95 4.63 -63.04
By element:
Atomic # 1 Polarization: 26.91 SS G_CDS: 0.33 Total: 27.25 kcal
Atomic # 6 Polarization: 0.53 SS G_CDS: 4.92 Total: 5.45 kcal
Atomic # 7 Polarization: -109.74 SS G_CDS: -4.08 Total: -113.83 kcal
Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.26 kcal
Atomic # 9 Polarization: -7.47 SS G_CDS: 1.48 Total: -5.99 kcal
Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal
Total: -67.67 4.63 -63.04 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000939040767.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.475 kcal
(2) G-P(sol) polarization free energy of solvation -67.665 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.511 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds