Wall clock time and date at job start Tue Mar 31 2020 14:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.49576 * 2 1 4 4 C 1.53191 * 109.52579 * 239.91823 * 2 1 3 5 5 N 1.46922 * 108.77518 * 185.39710 * 4 2 1 6 6 C 1.36935 * 120.63033 * 233.58570 * 5 4 2 7 7 H 1.08007 * 119.99782 * 152.60438 * 6 5 4 8 8 C 1.38816 * 120.00058 * 332.60942 * 6 5 4 9 9 N 1.31613 * 119.99829 * 159.32777 * 8 6 5 10 10 Si 1.86800 * 119.99715 * 339.32203 * 8 6 5 11 11 H 1.48497 * 109.46830 * 92.94827 * 10 8 6 12 12 H 1.48501 * 109.46716 * 212.94525 * 10 8 6 13 13 H 1.48497 * 109.47333 * 332.94370 * 10 8 6 14 14 C 1.46931 * 118.74061 * 53.60859 * 5 4 2 15 15 C 1.53194 * 108.76119 * 306.38505 * 14 5 4 16 16 C 1.53036 * 109.31359 * 54.65625 * 15 14 5 17 17 H 1.08997 * 109.46510 * 58.62490 * 16 15 14 18 18 N 1.46509 * 109.45740 * 178.60124 * 16 15 14 19 19 C 1.34781 * 119.99739 * 275.30045 * 18 16 15 20 20 O 1.21574 * 119.99650 * 359.72531 * 19 18 16 21 21 C 1.47725 * 119.99914 * 179.72903 * 19 18 16 22 22 C 1.39653 * 120.10887 * 359.71649 * 21 19 18 23 23 C 1.37848 * 119.92004 * 179.72572 * 22 21 19 24 24 C 1.38605 * 120.14896 * 0.57949 * 23 22 21 25 25 F 1.35104 * 119.88823 * 179.72141 * 24 23 22 26 26 C 1.38829 * 120.22113 * 359.70006 * 24 23 22 27 27 F 1.35098 * 119.96333 * 180.02562 * 26 24 23 28 28 C 1.38053 * 120.07357 * 359.97438 * 26 24 23 29 29 H 1.09006 * 109.47680 * 299.93296 * 1 2 3 30 30 H 1.08999 * 109.47666 * 59.93663 * 1 2 3 31 31 H 1.09004 * 109.47493 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.58467 * 305.18357 * 4 2 1 33 33 H 1.08997 * 109.58369 * 65.61174 * 4 2 1 34 34 H 0.97004 * 119.99858 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.58436 * 66.17495 * 14 5 4 36 36 H 1.09002 * 109.58613 * 186.60253 * 14 5 4 37 37 H 1.08999 * 109.50732 * 294.68887 * 15 14 5 38 38 H 1.09002 * 109.48004 * 174.59925 * 15 14 5 39 39 H 0.96994 * 119.99973 * 95.02499 * 18 16 15 40 40 H 1.07994 * 120.03625 * 0.02562 * 22 21 19 41 41 H 1.07999 * 119.92333 * 180.27356 * 23 22 21 42 42 H 1.08007 * 120.07540 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5052 -0.8283 -1.1689 6 6 4.2943 -0.3782 -2.1936 7 1 5.3010 -0.0425 -1.9926 8 6 3.8002 -0.3534 -3.4906 9 7 4.3583 0.4260 -4.3925 10 14 2.3435 -1.4262 -3.9559 11 1 1.0868 -0.6519 -3.7939 12 1 2.4794 -1.8593 -5.3698 13 1 2.3065 -2.6203 -3.0739 14 6 4.1059 -1.4255 0.0317 15 6 3.5707 -0.6936 1.2665 16 6 2.0407 -0.7227 1.2486 17 1 1.6973 -1.7571 1.2354 18 7 1.5258 -0.0526 2.4453 19 6 1.4024 -0.7366 3.6002 20 8 1.7138 -1.9108 3.6474 21 6 0.8889 -0.0593 4.8084 22 6 0.5360 1.2909 4.7582 23 6 0.0519 1.9175 5.8865 24 6 -0.0742 1.2136 7.0738 25 9 -0.5441 1.8344 8.1780 26 6 0.2802 -0.1274 7.1321 27 9 0.1547 -0.8087 8.2919 28 6 0.7598 -0.7658 6.0059 29 1 -0.3635 0.5128 0.8906 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6064 -1.7217 -1.2978 33 1 1.7644 -0.1580 -2.1387 34 1 4.0128 0.4437 -5.2988 35 1 3.8386 -2.4807 0.0877 36 1 5.1902 -1.3228 -0.0126 37 1 3.9152 0.3405 1.2545 38 1 3.9335 -1.1879 2.1677 39 1 1.2774 0.8842 2.4076 40 1 0.6378 1.8423 3.8352 41 1 -0.2252 2.9606 5.8466 42 1 1.0351 -1.8092 6.0511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942123521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:16 Heat of formation + Delta-G solvation = -76.908155 kcal Electronic energy + Delta-G solvation = -27290.232723 eV Core-core repulsion = 23099.863964 eV Total energy + Delta-G solvation = -4190.368759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.92755 -48.99428 -40.58726 -38.89414 -37.71090 -34.86493 -32.75736 -32.05479 -31.54866 -31.15911 -29.82715 -26.35024 -25.50607 -24.08501 -23.61031 -22.61741 -20.97958 -20.72867 -19.87051 -18.71382 -17.96834 -17.57781 -16.96706 -16.77555 -16.46011 -16.08744 -15.40307 -15.16121 -15.03528 -14.94319 -14.56601 -14.37906 -14.30775 -13.79107 -13.48465 -13.37518 -13.32959 -13.06906 -12.69832 -12.47124 -12.41705 -11.97508 -11.84246 -11.70299 -11.52947 -10.96833 -10.73117 -10.58142 -10.37426 -10.24890 -10.01907 -9.77209 -9.66201 -9.51967 -9.30232 -8.92701 -8.67529 -7.04252 -5.99517 -3.35713 0.04447 0.46027 2.31266 2.89696 3.24773 3.25628 3.27048 3.45775 3.48477 3.83877 4.00485 4.26843 4.34473 4.48312 4.54719 4.85056 4.90618 5.12337 5.21934 5.23959 5.27556 5.29985 5.39415 5.40740 5.57545 5.62267 5.80119 5.82289 5.95308 6.03007 6.06019 6.14228 6.19778 6.29883 6.32884 6.54780 6.57264 6.62621 6.64464 6.86181 7.39409 7.91011 8.04920 8.28413 8.88923 9.67047 10.04160 11.16375 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.029549 B = 0.002647 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.341093 B =10575.670255 C =10787.712454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.135 3.865 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.907 5.907 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.143 4.143 16 C 0.156 3.844 17 H 0.086 0.914 18 N -0.712 5.712 19 C 0.556 3.444 20 O -0.530 6.530 21 C -0.110 4.110 22 C -0.068 4.068 23 C -0.130 4.130 24 C 0.088 3.912 25 F -0.124 7.124 26 C 0.062 3.938 27 F -0.124 7.124 28 C -0.069 4.069 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.263 0.737 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.397 0.603 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.680 3.459 20.681 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 H 0.097 0.903 4 C 0.009 3.991 5 N -0.329 5.329 6 C -0.389 4.389 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.550 5.550 10 Si 0.710 3.290 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.183 4.183 16 C 0.053 3.947 17 H 0.105 0.895 18 N -0.362 5.362 19 C 0.342 3.658 20 O -0.407 6.407 21 C -0.113 4.113 22 C -0.087 4.087 23 C -0.149 4.149 24 C 0.068 3.932 25 F -0.103 7.103 26 C 0.042 3.958 27 F -0.103 7.103 28 C -0.088 4.088 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.232 0.768 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.424 2.650 20.582 23.223 hybrid contribution -1.093 -0.004 0.076 1.096 sum -11.518 2.647 20.658 23.800 Atomic orbital electron populations 1.21806 0.95524 1.01791 1.01251 1.21996 0.94878 1.01082 0.95700 0.90269 1.21378 0.84938 0.97280 0.95514 1.44410 1.00608 1.70055 1.17853 1.18928 0.98618 1.36182 0.85137 0.89596 1.25285 0.98005 0.98587 0.95646 1.69832 1.43233 1.37792 1.04159 0.86997 0.82532 0.82546 0.76912 1.21552 1.23095 1.19453 1.20906 0.97422 0.94185 0.85107 1.22408 0.94292 1.01940 0.99644 1.21105 0.94184 0.97248 0.82181 0.89550 1.46178 1.65416 1.14475 1.10175 1.17962 0.78475 0.86496 0.82873 1.90816 1.49719 1.15583 1.84612 1.19973 1.02755 0.94174 0.94442 1.21299 0.95378 0.93292 0.98684 1.21039 1.01741 1.01594 0.90545 1.17939 1.00779 0.89809 0.84692 1.91559 1.85674 1.82181 1.50867 1.17509 1.05478 0.89185 0.83654 1.91563 1.93840 1.79200 1.45687 1.21199 0.96096 1.02014 0.89516 0.93187 0.92361 0.92809 0.95428 0.90435 0.92730 0.95619 0.91483 0.91692 0.92071 0.76797 0.83627 0.82846 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.03 37.15 0.34 -1.53 16 2 C -0.12 -1.80 2.46 -90.50 -0.22 -2.02 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.14 2.76 3.49 -3.71 -0.01 2.75 16 5 N -0.61 -13.77 2.77 -172.32 -0.48 -14.25 16 6 C -0.26 -7.04 10.03 -15.06 -0.15 -7.19 16 7 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 8 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 9 N -0.91 -27.18 13.97 55.49 0.78 -26.40 16 10 Si 0.88 21.75 24.35 -169.99 -4.14 17.61 16 11 H -0.29 -6.77 6.62 56.52 0.37 -6.39 16 12 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 13 H -0.27 -6.59 6.64 56.52 0.38 -6.22 16 14 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 15 C -0.14 -2.28 5.65 -26.61 -0.15 -2.43 16 16 C 0.16 2.29 1.88 -67.89 -0.13 2.16 16 17 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 18 N -0.71 -8.06 4.32 -54.74 -0.24 -8.29 16 19 C 0.56 6.82 7.73 -12.38 -0.10 6.72 16 20 O -0.53 -8.49 16.01 5.30 0.08 -8.41 16 21 C -0.11 -1.03 5.87 -104.97 -0.62 -1.65 16 22 C -0.07 -0.45 9.53 -39.20 -0.37 -0.82 16 23 C -0.13 -0.82 10.01 -39.59 -0.40 -1.22 16 24 C 0.09 0.75 7.31 -39.23 -0.29 0.46 16 25 F -0.12 -1.16 17.17 2.25 0.04 -1.12 16 26 C 0.06 0.59 7.30 -39.43 -0.29 0.30 16 27 F -0.12 -1.31 17.17 2.25 0.04 -1.27 16 28 C -0.07 -0.66 9.57 -39.13 -0.37 -1.03 16 29 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.57 7.08 -51.93 -0.37 0.21 16 33 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.29 7.93 -51.93 -0.41 0.87 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.40 3.33 6.33 -40.82 -0.26 3.07 16 40 H 0.15 0.60 6.40 -52.49 -0.34 0.26 16 41 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.16 1.56 7.65 -52.48 -0.40 1.16 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -31.70 345.82 -6.93 -38.63 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.36 Total: 0.34 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.87 Total: -2.06 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.06 Total: -48.94 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.70 -6.93 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942123521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.277 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds