Wall clock time and date at job start Tue Mar 31 2020 14:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49556 * 2 1 4 4 C 1.53193 * 109.50053 * 120.06287 * 2 1 3 5 5 N 1.46926 * 108.77778 * 174.58701 * 4 2 1 6 6 C 1.36931 * 120.63162 * 126.37557 * 5 4 2 7 7 H 1.08002 * 119.99748 * 207.68563 * 6 5 4 8 8 C 1.38814 * 120.00050 * 27.67987 * 6 5 4 9 9 N 1.31616 * 120.00061 * 17.37477 * 8 6 5 10 10 Si 1.86793 * 120.00044 * 197.37569 * 8 6 5 11 11 H 1.48505 * 109.47339 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47541 * 120.00014 * 10 8 6 13 13 H 1.48504 * 109.47257 * 240.00249 * 10 8 6 14 14 C 1.46932 * 118.73559 * 306.39343 * 5 4 2 15 15 C 1.53191 * 108.77596 * 53.60927 * 14 5 4 16 16 C 1.53035 * 109.33855 * 305.37751 * 15 14 5 17 17 H 1.09000 * 109.48386 * 181.35265 * 16 15 14 18 18 N 1.46496 * 109.43373 * 301.31000 * 16 15 14 19 19 C 1.34775 * 120.00065 * 275.05146 * 18 16 15 20 20 O 1.21561 * 120.00099 * 0.02562 * 19 18 16 21 21 C 1.47699 * 119.99899 * 179.97438 * 19 18 16 22 22 C 1.39686 * 120.15496 * 0.02562 * 21 19 18 23 23 C 1.37847 * 119.92291 * 179.97438 * 22 21 19 24 24 C 1.38447 * 120.24322 * 359.97438 * 23 22 21 25 25 C 1.38379 * 120.31258 * 359.97438 * 24 23 22 26 26 F 1.35099 * 119.96195 * 180.02562 * 25 24 23 27 27 C 1.38542 * 120.07101 * 359.79183 * 25 24 23 28 28 F 1.35101 * 120.11943 * 180.23113 * 27 25 24 29 29 H 1.09000 * 109.46952 * 299.99549 * 1 2 3 30 30 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47009 * 59.99854 * 1 2 3 32 32 H 1.08991 * 109.58689 * 294.38025 * 4 2 1 33 33 H 1.09003 * 109.58367 * 54.65993 * 4 2 1 34 34 H 0.97000 * 120.00280 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58198 * 173.39745 * 14 5 4 36 36 H 1.09002 * 109.58671 * 293.81943 * 14 5 4 37 37 H 1.09005 * 109.49750 * 65.31541 * 15 14 5 38 38 H 1.08993 * 109.49464 * 185.37440 * 15 14 5 39 39 H 0.97005 * 119.99566 * 95.05560 * 18 16 15 40 40 H 1.08001 * 120.04012 * 359.97438 * 22 21 19 41 41 H 1.08004 * 119.87935 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.83987 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 3.5047 -0.8287 1.1698 6 6 4.2937 -0.3779 2.1942 7 1 5.2989 -0.0385 1.9923 8 6 3.8014 -0.3570 3.4919 9 7 2.7382 -1.0672 3.8040 10 14 4.6480 0.6790 4.7954 11 1 5.8117 1.3781 4.1934 12 1 3.6913 1.6813 5.3297 13 1 5.1139 -0.1982 5.8994 14 6 4.1053 -1.4267 -0.0304 15 6 3.5709 -0.6953 -1.2658 16 6 2.0409 -0.7227 -1.2486 17 1 1.6582 -0.2238 -2.1390 18 7 1.5784 -2.1127 -1.2315 19 6 1.4502 -2.7945 -2.3870 20 8 1.7188 -2.2562 -3.4433 21 6 0.9845 -4.1960 -2.3696 22 6 0.6756 -4.8179 -1.1576 23 6 0.2408 -6.1259 -1.1470 24 6 0.1086 -6.8264 -2.3339 25 6 0.4109 -6.2198 -3.5403 26 9 0.2788 -6.9097 -4.6943 27 6 0.8443 -4.9041 -3.5664 28 9 1.1352 -4.3094 -4.7441 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 1.7638 -0.1574 2.1389 33 1 1.6034 -1.7203 1.2998 34 1 2.3944 -1.0529 4.7109 35 1 5.1896 -1.3245 0.0141 36 1 3.8376 -2.4818 -0.0861 37 1 3.9159 0.3386 -1.2542 38 1 3.9340 -1.1898 -2.1667 39 1 1.3644 -2.5422 -0.3885 40 1 0.7771 -4.2744 -0.2298 41 1 0.0025 -6.6062 -0.2095 42 1 -0.2330 -7.8509 -2.3181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942582252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:27 Heat of formation + Delta-G solvation = -78.499222 kcal Electronic energy + Delta-G solvation = -28152.605912 eV Core-core repulsion = 23962.168159 eV Total energy + Delta-G solvation = -4190.437753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.60701 -48.64912 -40.29899 -38.74545 -37.46069 -34.32110 -32.60010 -31.92952 -31.22592 -30.59611 -29.44118 -26.03391 -25.46655 -24.43172 -23.00167 -22.18378 -21.15375 -20.75348 -18.75745 -18.57106 -17.51352 -17.29152 -16.78444 -16.52663 -16.39540 -15.34746 -15.14586 -15.07557 -14.89075 -14.76214 -14.43749 -14.00282 -13.83841 -13.69314 -13.30928 -13.20303 -13.08911 -12.69300 -12.31717 -12.28154 -12.07091 -11.92663 -11.50840 -11.27471 -11.08809 -10.99326 -10.76975 -10.41242 -10.20579 -10.01523 -9.89676 -9.74744 -9.49465 -9.40651 -9.02649 -8.71963 -8.53263 -6.75871 -5.87945 -3.29152 0.31582 0.64569 2.62740 3.10967 3.32084 3.41010 3.43075 3.45207 3.59781 4.09888 4.31720 4.39984 4.43350 4.59505 4.78968 5.17811 5.24609 5.33827 5.37788 5.41731 5.51300 5.60612 5.62101 5.66466 5.79187 5.84961 6.02376 6.09210 6.13893 6.27958 6.38294 6.39854 6.47274 6.50272 6.58743 6.73173 6.85833 6.93025 7.20289 7.50465 7.68420 7.73894 8.32349 8.36243 9.12822 9.75862 10.31923 11.20656 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.003362 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.726582 B = 8326.171519 C = 8846.139069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 H 0.080 0.920 4 C 0.178 3.822 5 N -0.592 5.592 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.904 5.904 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.147 3.853 15 C -0.146 4.146 16 C 0.160 3.840 17 H 0.076 0.924 18 N -0.701 5.701 19 C 0.554 3.446 20 O -0.530 6.530 21 C -0.140 4.140 22 C -0.065 4.065 23 C -0.107 4.107 24 C -0.104 4.104 25 C 0.054 3.946 26 F -0.127 7.127 27 C 0.124 3.876 28 F -0.105 7.105 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.014 0.986 34 H 0.253 0.747 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.403 0.597 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 -9.023 -9.122 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.098 0.902 4 C 0.052 3.948 5 N -0.314 5.314 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.548 5.548 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.021 3.979 15 C -0.187 4.187 16 C 0.056 3.944 17 H 0.094 0.906 18 N -0.353 5.353 19 C 0.339 3.661 20 O -0.408 6.408 21 C -0.144 4.144 22 C -0.084 4.084 23 C -0.125 4.125 24 C -0.123 4.123 25 C 0.034 3.966 26 F -0.106 7.106 27 C 0.103 3.897 28 F -0.082 7.082 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.032 0.968 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.240 0.760 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.653 -8.613 -9.782 15.115 hybrid contribution 0.321 0.185 0.730 0.819 sum -7.333 -8.428 -9.052 14.378 Atomic orbital electron populations 1.21728 0.95796 1.01194 1.01016 1.22153 0.94796 1.00898 0.97067 0.90158 1.20785 0.83213 0.96456 0.94329 1.44068 1.01595 1.69499 1.16252 1.19238 0.97747 1.35273 0.85795 0.91605 1.24996 0.98520 0.99066 0.96924 1.70010 1.25723 1.40345 1.18743 0.86244 0.78955 0.80040 0.81663 1.20263 1.21555 1.21744 1.20870 0.96637 0.94037 0.86359 1.22391 0.94886 1.01895 0.99478 1.20964 0.94467 0.80107 0.98823 0.90624 1.46060 1.66392 1.14509 1.08327 1.17813 0.78628 0.84916 0.84716 1.90822 1.50177 1.69387 1.30379 1.20121 1.05759 0.96119 0.92408 1.21455 0.94848 0.95100 0.96966 1.21070 0.99149 0.93976 0.98292 1.21275 0.99377 1.01435 0.90226 1.17565 1.06433 0.89312 0.83338 1.91542 1.93801 1.78458 1.46781 1.17665 1.00048 0.89843 0.82170 1.91623 1.90035 1.83198 1.43393 0.92496 0.93259 0.93602 0.88994 0.96842 0.93688 0.92816 0.96558 0.91249 0.92458 0.75962 0.83527 0.83372 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.05 37.16 0.34 -1.69 16 2 C -0.13 -2.20 2.67 -90.50 -0.24 -2.44 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.18 3.75 4.30 -3.71 -0.02 3.73 16 5 N -0.59 -13.68 2.99 -172.32 -0.52 -14.20 16 6 C -0.25 -6.53 9.58 -15.06 -0.14 -6.67 16 7 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 8 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -24.41 11.19 55.49 0.62 -23.79 16 10 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.15 2.96 6.26 -3.71 -0.02 2.94 16 15 C -0.15 -2.59 5.77 -26.61 -0.15 -2.75 16 16 C 0.16 2.66 2.21 -67.89 -0.15 2.51 16 17 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 18 N -0.70 -10.71 3.55 -54.76 -0.19 -10.91 16 19 C 0.55 8.88 7.73 -12.40 -0.10 8.79 16 20 O -0.53 -10.25 15.00 5.31 0.08 -10.17 16 21 C -0.14 -1.86 5.88 -104.92 -0.62 -2.48 16 22 C -0.06 -0.66 9.54 -39.18 -0.37 -1.03 16 23 C -0.11 -0.84 10.03 -39.65 -0.40 -1.24 16 24 C -0.10 -0.86 10.01 -39.45 -0.40 -1.25 16 25 C 0.05 0.61 7.30 -39.42 -0.29 0.32 16 26 F -0.13 -1.52 17.18 2.25 0.04 -1.49 16 27 C 0.12 1.71 7.29 -38.90 -0.28 1.42 16 28 F -0.10 -1.70 15.46 2.25 0.03 -1.67 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.67 7.53 -51.93 -0.39 0.28 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.23 6.03 -51.93 -0.31 1.92 16 33 H 0.01 0.29 6.65 -51.93 -0.35 -0.06 16 34 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 36 H 0.02 0.33 7.74 -51.93 -0.40 -0.07 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.40 5.80 4.76 -40.82 -0.19 5.61 16 40 H 0.15 1.35 6.40 -52.49 -0.34 1.02 16 41 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -30.14 346.47 -7.97 -38.11 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.30 Total: 2.95 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.93 Total: 0.17 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.09 Total: -48.90 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.07 Total: -3.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.14 -7.97 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942582252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.393 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds