Wall clock time and date at job start Tue Mar 31 2020 14:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49556 * 2 1 4 4 C 1.53193 * 109.50053 * 120.06287 * 2 1 3 5 5 N 1.46926 * 108.77778 * 174.58701 * 4 2 1 6 6 C 1.36931 * 120.63162 * 126.37557 * 5 4 2 7 7 H 1.08002 * 119.99748 * 207.68563 * 6 5 4 8 8 C 1.38814 * 120.00050 * 27.67987 * 6 5 4 9 9 N 1.31616 * 120.00061 * 17.37477 * 8 6 5 10 10 Si 1.86793 * 120.00044 * 197.37569 * 8 6 5 11 11 H 1.48505 * 109.47339 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47541 * 120.00014 * 10 8 6 13 13 H 1.48504 * 109.47257 * 240.00249 * 10 8 6 14 14 C 1.46932 * 118.73559 * 306.39343 * 5 4 2 15 15 C 1.53191 * 108.77596 * 53.60927 * 14 5 4 16 16 C 1.53035 * 109.33855 * 305.37751 * 15 14 5 17 17 H 1.09000 * 109.48386 * 181.35265 * 16 15 14 18 18 N 1.46496 * 109.43373 * 301.31000 * 16 15 14 19 19 C 1.34775 * 120.00065 * 275.05146 * 18 16 15 20 20 O 1.21561 * 120.00099 * 0.02562 * 19 18 16 21 21 C 1.47699 * 119.99899 * 179.97438 * 19 18 16 22 22 C 1.39686 * 120.15496 * 0.02562 * 21 19 18 23 23 C 1.37847 * 119.92291 * 179.97438 * 22 21 19 24 24 C 1.38447 * 120.24322 * 359.97438 * 23 22 21 25 25 C 1.38379 * 120.31258 * 359.97438 * 24 23 22 26 26 F 1.35099 * 119.96195 * 180.02562 * 25 24 23 27 27 C 1.38542 * 120.07101 * 359.79183 * 25 24 23 28 28 F 1.35101 * 120.11943 * 180.23113 * 27 25 24 29 29 H 1.09000 * 109.46952 * 299.99549 * 1 2 3 30 30 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47009 * 59.99854 * 1 2 3 32 32 H 1.08991 * 109.58689 * 294.38025 * 4 2 1 33 33 H 1.09003 * 109.58367 * 54.65993 * 4 2 1 34 34 H 0.97000 * 120.00280 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58198 * 173.39745 * 14 5 4 36 36 H 1.09002 * 109.58671 * 293.81943 * 14 5 4 37 37 H 1.09005 * 109.49750 * 65.31541 * 15 14 5 38 38 H 1.08993 * 109.49464 * 185.37440 * 15 14 5 39 39 H 0.97005 * 119.99566 * 95.05560 * 18 16 15 40 40 H 1.08001 * 120.04012 * 359.97438 * 22 21 19 41 41 H 1.08004 * 119.87935 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.83987 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 3.5047 -0.8287 1.1698 6 6 4.2937 -0.3779 2.1942 7 1 5.2989 -0.0385 1.9923 8 6 3.8014 -0.3570 3.4919 9 7 2.7382 -1.0672 3.8040 10 14 4.6480 0.6790 4.7954 11 1 5.8117 1.3781 4.1934 12 1 3.6913 1.6813 5.3297 13 1 5.1139 -0.1982 5.8994 14 6 4.1053 -1.4267 -0.0304 15 6 3.5709 -0.6953 -1.2658 16 6 2.0409 -0.7227 -1.2486 17 1 1.6582 -0.2238 -2.1390 18 7 1.5784 -2.1127 -1.2315 19 6 1.4502 -2.7945 -2.3870 20 8 1.7188 -2.2562 -3.4433 21 6 0.9845 -4.1960 -2.3696 22 6 0.6756 -4.8179 -1.1576 23 6 0.2408 -6.1259 -1.1470 24 6 0.1086 -6.8264 -2.3339 25 6 0.4109 -6.2198 -3.5403 26 9 0.2788 -6.9097 -4.6943 27 6 0.8443 -4.9041 -3.5664 28 9 1.1352 -4.3094 -4.7441 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 1.7638 -0.1574 2.1389 33 1 1.6034 -1.7203 1.2998 34 1 2.3944 -1.0529 4.7109 35 1 5.1896 -1.3245 0.0141 36 1 3.8376 -2.4818 -0.0861 37 1 3.9159 0.3386 -1.2542 38 1 3.9340 -1.1898 -2.1667 39 1 1.3644 -2.5422 -0.3885 40 1 0.7771 -4.2744 -0.2298 41 1 0.0025 -6.6062 -0.2095 42 1 -0.2330 -7.8509 -2.3181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942582252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:26 Heat of formation + Delta-G solvation = -94.957832 kcal Electronic energy + Delta-G solvation = -28153.319611 eV Core-core repulsion = 23962.168159 eV Total energy + Delta-G solvation = -4191.151452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.57005 -49.64852 -41.52995 -39.83095 -38.79969 -35.96896 -33.98155 -33.52678 -32.37978 -31.48704 -30.93874 -27.51346 -27.13113 -25.51990 -24.02192 -23.60599 -22.65181 -22.00165 -20.17893 -19.66514 -18.74658 -18.46752 -18.10860 -17.50402 -17.45791 -16.83280 -16.54334 -16.23795 -15.99164 -15.86670 -15.65815 -15.43952 -15.33505 -15.11152 -14.74032 -14.63286 -14.27454 -14.01610 -13.59652 -13.17857 -13.06646 -13.04710 -12.92828 -12.83980 -12.73733 -12.55577 -12.46690 -12.14707 -11.78705 -11.69442 -11.48364 -11.15190 -11.04861 -10.52560 -10.32345 -9.98420 -9.88356 -8.64112 -7.85467 -5.28370 -0.55767 -0.18385 1.47805 1.52048 1.60394 1.63766 1.97484 2.46057 2.53467 2.68122 3.23602 3.29666 3.38480 3.60910 3.68095 3.73481 3.83854 4.03594 4.06721 4.18685 4.34129 4.45053 4.58445 4.64885 4.67919 4.74410 4.84350 4.85465 4.96834 4.97434 5.02770 5.09138 5.10950 5.14401 5.30667 5.35261 5.50345 5.56699 5.60330 5.68430 5.78699 6.42352 6.44870 7.08873 7.18957 7.87974 8.39267 9.20358 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019956 B = 0.003362 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.726582 B = 8326.171519 C = 8846.139069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.072 0.928 4 C 0.187 3.813 5 N -0.606 5.606 6 C -0.264 4.264 7 H 0.059 0.941 8 C -0.039 4.039 9 N -0.924 5.924 10 Si 0.958 3.042 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.293 1.293 14 C 0.150 3.850 15 C -0.136 4.136 16 C 0.166 3.834 17 H 0.077 0.923 18 N -0.693 5.693 19 C 0.554 3.446 20 O -0.570 6.570 21 C -0.159 4.159 22 C -0.061 4.061 23 C -0.088 4.088 24 C -0.081 4.081 25 C 0.045 3.955 26 F -0.134 7.134 27 C 0.093 3.907 28 F -0.131 7.131 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.014 0.986 34 H 0.251 0.749 35 H 0.046 0.954 36 H 0.019 0.981 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.408 0.592 40 H 0.157 0.843 41 H 0.190 0.810 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -10.555 -8.279 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.090 0.910 4 C 0.062 3.938 5 N -0.330 5.330 6 C -0.394 4.394 7 H 0.077 0.923 8 C -0.235 4.235 9 N -0.570 5.570 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.220 1.220 14 C 0.024 3.976 15 C -0.176 4.176 16 C 0.062 3.938 17 H 0.095 0.905 18 N -0.345 5.345 19 C 0.341 3.659 20 O -0.451 6.451 21 C -0.163 4.163 22 C -0.080 4.080 23 C -0.106 4.106 24 C -0.100 4.100 25 C 0.025 3.975 26 F -0.113 7.113 27 C 0.071 3.929 28 F -0.109 7.109 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.247 0.753 40 H 0.174 0.826 41 H 0.207 0.793 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.765 -10.154 -8.942 16.121 hybrid contribution 0.668 0.569 0.488 1.004 sum -8.097 -9.585 -8.454 15.130 Atomic orbital electron populations 1.21672 0.93470 1.02139 1.01811 1.21959 0.96645 0.99808 0.95238 0.91005 1.20632 0.82247 0.96267 0.94675 1.44266 1.02349 1.69932 1.16407 1.19448 0.97946 1.35194 0.86812 0.92309 1.25583 0.99383 1.00122 0.98441 1.70113 1.26725 1.41327 1.18844 0.85356 0.78076 0.78520 0.79331 1.19862 1.21640 1.21971 1.20890 0.96254 0.94239 0.86209 1.22258 0.95756 1.01454 0.98149 1.20809 0.93586 0.80989 0.98436 0.90537 1.45937 1.66135 1.13924 1.08550 1.18227 0.77685 0.85960 0.83990 1.90795 1.52036 1.70568 1.31676 1.19935 1.07986 0.94770 0.93613 1.21667 0.94188 0.96245 0.95890 1.21545 0.96604 0.92633 0.99777 1.21751 0.96705 1.02809 0.88701 1.17805 1.06902 0.88527 0.84272 1.91523 1.93912 1.78356 1.47519 1.18051 1.02106 0.91171 0.81548 1.91544 1.90651 1.83875 1.44832 0.92391 0.92268 0.92100 0.92256 0.96847 0.93984 0.93505 0.96339 0.91328 0.92374 0.75309 0.82593 0.79273 0.79448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.05 71.98 0.65 -3.02 16 2 C -0.12 -3.90 2.67 -10.71 -0.03 -3.93 16 3 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.19 7.86 4.30 86.36 0.37 8.23 16 5 N -0.61 -28.14 2.99 -699.09 -2.09 -30.23 16 6 C -0.26 -13.80 9.58 84.04 0.81 -12.99 16 7 H 0.06 3.09 7.89 -2.91 -0.02 3.07 16 8 C -0.04 -2.05 4.91 84.86 0.42 -1.63 16 9 N -0.92 -50.03 11.19 21.65 0.24 -49.79 16 10 Si 0.96 42.86 29.59 68.60 2.03 44.89 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 C 0.15 6.02 6.26 86.36 0.54 6.56 16 15 C -0.14 -4.81 5.77 30.67 0.18 -4.63 16 16 C 0.17 5.44 2.21 45.02 0.10 5.54 16 17 H 0.08 2.56 7.58 -2.39 -0.02 2.54 16 18 N -0.69 -20.74 3.55 -445.44 -1.58 -22.32 16 19 C 0.55 17.76 7.73 86.74 0.67 18.43 16 20 O -0.57 -22.59 15.00 -3.91 -0.06 -22.65 16 21 C -0.16 -4.12 5.88 -20.06 -0.12 -4.23 16 22 C -0.06 -1.08 9.54 22.53 0.21 -0.87 16 23 C -0.09 -0.98 10.03 22.23 0.22 -0.76 16 24 C -0.08 -1.00 10.01 22.35 0.22 -0.78 16 25 C 0.05 0.95 7.30 22.38 0.16 1.11 16 26 F -0.13 -3.09 17.18 44.97 0.77 -2.31 16 27 C 0.09 2.54 7.29 22.71 0.17 2.71 16 28 F -0.13 -4.47 15.46 44.97 0.70 -3.77 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.51 7.53 -2.39 -0.02 1.49 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 2.90 6.03 -2.39 -0.01 2.89 16 33 H 0.01 0.56 6.65 -2.39 -0.02 0.55 16 34 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 35 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 36 H 0.02 0.74 7.74 -2.39 -0.02 0.72 16 37 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.41 11.27 4.76 -92.70 -0.44 10.83 16 40 H 0.16 2.45 6.40 -2.91 -0.02 2.43 16 41 H 0.19 0.69 8.06 -2.91 -0.02 0.66 16 42 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -67.06 346.47 5.20 -61.86 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.62 Total: 14.57 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 4.58 Total: 9.74 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -3.43 Total: -102.34 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.06 Total: -22.65 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.47 Total: -6.08 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.06 5.20 -61.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942582252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.100 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds