Wall clock time and date at job start Tue Mar 31 2020 14:49:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.51763 * 2 1
4 4 C 1.53191 * 109.50106 * 120.08222 * 2 1 3
5 5 N 1.46926 * 108.77614 * 174.58554 * 4 2 1
6 6 C 1.36935 * 120.62843 * 126.41487 * 5 4 2
7 7 H 1.08002 * 119.99852 * 207.67928 * 6 5 4
8 8 C 1.38813 * 120.00109 * 27.67795 * 6 5 4
9 9 N 1.31616 * 119.99841 * 17.35454 * 8 6 5
10 10 Si 1.86800 * 120.00050 * 197.35753 * 8 6 5
11 11 H 1.48505 * 109.47246 * 89.99833 * 10 8 6
12 12 H 1.48494 * 109.47086 * 209.99769 * 10 8 6
13 13 H 1.48500 * 109.47045 * 330.00001 * 10 8 6
14 14 C 1.46926 * 118.74065 * 306.39720 * 5 4 2
15 15 C 1.53188 * 108.77667 * 53.60346 * 14 5 4
16 16 C 1.53038 * 109.49606 * 239.92454 * 2 1 3
17 17 H 1.08994 * 109.46221 * 298.68274 * 16 2 1
18 18 N 1.46499 * 109.46351 * 58.66183 * 16 2 1
19 19 C 1.34771 * 120.00149 * 205.00372 * 18 16 2
20 20 O 1.21584 * 119.99985 * 359.97438 * 19 18 16
21 21 C 1.47543 * 120.00127 * 179.72473 * 19 18 16
22 22 C 1.39900 * 120.19195 * 89.99684 * 21 19 18
23 23 F 1.35101 * 120.09801 * 359.97438 * 22 21 19
24 24 C 1.38224 * 119.80563 * 179.72646 * 22 21 19
25 25 C 1.38304 * 120.18868 * 0.56797 * 24 22 21
26 26 C 1.38304 * 120.38577 * 359.68568 * 25 24 22
27 27 C 1.38219 * 120.18784 * 0.03405 * 26 25 24
28 28 F 1.35101 * 120.09769 * 180.02562 * 27 26 25
29 29 H 1.09007 * 109.46495 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47140 * 300.06944 * 1 2 3
31 31 H 1.08991 * 109.47371 * 60.08053 * 1 2 3
32 32 H 1.08994 * 109.59007 * 294.37804 * 4 2 1
33 33 H 1.09000 * 109.58142 * 54.80245 * 4 2 1
34 34 H 0.97000 * 119.99971 * 180.02562 * 9 8 6
35 35 H 1.08998 * 109.58482 * 173.39433 * 14 5 4
36 36 H 1.09001 * 109.58359 * 293.67837 * 14 5 4
37 37 H 1.09002 * 109.49760 * 185.41374 * 15 14 5
38 38 H 1.09004 * 109.49940 * 65.32320 * 15 14 5
39 39 H 0.97002 * 120.00019 * 24.99188 * 18 16 2
40 40 H 1.08001 * 119.90180 * 180.27718 * 24 22 21
41 41 H 1.08000 * 119.80685 * 179.70245 * 25 24 22
42 42 H 1.08000 * 119.90900 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8942 1.0274 0.0000
4 6 2.0414 -0.7238 1.2495
5 7 3.5047 -0.8291 1.1694
6 6 4.2936 -0.3793 2.1943
7 1 5.2989 -0.0398 1.9929
8 6 3.8013 -0.3597 3.4921
9 7 2.7378 -1.0699 3.8032
10 14 4.6482 0.6746 4.7968
11 1 4.0517 2.0345 4.8147
12 1 4.4691 0.0381 6.1264
13 1 6.0970 0.7737 4.4865
14 6 4.1053 -1.4265 -0.0310
15 6 3.5708 -0.6948 -1.2661
16 6 2.0407 -0.7230 -1.2484
17 1 1.6970 -1.7572 -1.2353
18 7 1.5265 -0.0528 -2.4453
19 6 1.3983 -0.7380 -3.5988
20 8 1.7100 -1.9123 -3.6461
21 6 0.8747 -0.0646 -4.8026
22 6 1.7496 0.5723 -5.6892
23 9 3.0785 0.5737 -5.4458
24 6 1.2509 1.1959 -6.8175
25 6 -0.1098 1.2013 -7.0651
26 6 -0.9823 0.5786 -6.1912
27 6 -0.5002 -0.0546 -5.0611
28 9 -1.3542 -0.6628 -4.2089
29 1 -0.3632 -1.0278 0.0005
30 1 -0.3633 0.5149 0.8894
31 1 -0.3633 0.5125 -0.8906
32 1 1.7638 -0.1581 2.1389
33 1 1.6053 -1.7216 1.2978
34 1 2.3935 -1.0559 4.7100
35 1 5.1896 -1.3244 0.0136
36 1 3.8397 -2.4823 -0.0857
37 1 3.9334 -1.1894 -2.1672
38 1 3.9159 0.3391 -1.2542
39 1 1.2780 0.8841 -2.4076
40 1 1.9254 1.6842 -7.5053
41 1 -0.4932 1.6945 -7.9461
42 1 -2.0434 0.5872 -6.3922
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000944319407.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:49:38
Heat of formation + Delta-G solvation = -82.281992 kcal
Electronic energy + Delta-G solvation = -27934.504352 eV
Core-core repulsion = 23743.902566 eV
Total energy + Delta-G solvation = -4190.601786 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-49.36164 -49.33961 -40.11662 -38.79510 -37.50821 -34.54899 -32.57555 -31.85448
-31.47304 -30.81367 -29.30420 -25.97316 -25.45577 -24.14179 -23.25419 -22.21842
-20.88835 -20.54674 -19.48531 -18.55702 -17.72204 -17.64313 -16.72642 -16.51909
-16.01654 -15.83296 -15.63068 -15.58794 -14.82291 -14.76327 -14.45276 -14.10284
-13.80037 -13.58374 -13.19585 -13.11949 -12.88887 -12.61285 -12.42034 -12.29651
-12.27921 -12.03916 -11.47140 -11.31828 -11.08149 -10.76343 -10.65318 -10.36560
-10.23715 -10.05173 -10.00226 -9.71975 -9.50515 -9.45110 -9.22739 -8.77210
-8.45959 -6.69281 -5.79355 -3.21353 0.35566 0.50960 2.46519 2.81009
3.14284 3.37731 3.39314 3.44942 3.46291 3.93217 4.18721 4.40093
4.48363 4.49465 4.63704 5.16893 5.25178 5.30988 5.32270 5.43047
5.45706 5.51428 5.56968 5.64757 5.68367 5.87325 6.08829 6.12165
6.22095 6.22942 6.34379 6.44447 6.50005 6.58496 6.68599 6.79343
6.89732 6.99450 7.33014 7.52329 7.65673 7.80095 8.18848 8.44310
9.20616 9.83739 10.40723 11.29403
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.023529 B = 0.003122 C = 0.002959
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1189.719933 B = 8965.170699 C = 9461.001340
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.122 4.122
3 H 0.068 0.932
4 C 0.182 3.818
5 N -0.593 5.593
6 C -0.252 4.252
7 H 0.067 0.933
8 C 0.002 3.998
9 N -0.902 5.902
10 Si 0.903 3.097
11 H -0.288 1.288
12 H -0.291 1.291
13 H -0.279 1.279
14 C 0.148 3.852
15 C -0.140 4.140
16 C 0.155 3.845
17 H 0.084 0.916
18 N -0.705 5.705
19 C 0.561 3.439
20 O -0.521 6.521
21 C -0.196 4.196
22 C 0.163 3.837
23 F -0.119 7.119
24 C -0.167 4.167
25 C -0.048 4.048
26 C -0.167 4.167
27 C 0.163 3.837
28 F -0.119 7.119
29 H 0.052 0.948
30 H 0.056 0.944
31 H 0.041 0.959
32 H 0.093 0.907
33 H 0.021 0.979
34 H 0.254 0.746
35 H 0.057 0.943
36 H 0.021 0.979
37 H 0.055 0.945
38 H 0.060 0.940
39 H 0.397 0.603
40 H 0.149 0.851
41 H 0.148 0.852
42 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.510 7.403 -21.916 24.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.143 4.143
3 H 0.087 0.913
4 C 0.055 3.945
5 N -0.315 5.315
6 C -0.382 4.382
7 H 0.084 0.916
8 C -0.196 4.196
9 N -0.547 5.547
10 Si 0.733 3.267
11 H -0.215 1.215
12 H -0.218 1.218
13 H -0.204 1.204
14 C 0.021 3.979
15 C -0.180 4.180
16 C 0.053 3.947
17 H 0.102 0.898
18 N -0.354 5.354
19 C 0.344 3.656
20 O -0.397 6.397
21 C -0.201 4.201
22 C 0.143 3.857
23 F -0.097 7.097
24 C -0.186 4.186
25 C -0.066 4.066
26 C -0.186 4.186
27 C 0.143 3.857
28 F -0.098 7.098
29 H 0.071 0.929
30 H 0.075 0.925
31 H 0.061 0.939
32 H 0.111 0.889
33 H 0.039 0.961
34 H 0.064 0.936
35 H 0.075 0.925
36 H 0.039 0.961
37 H 0.074 0.926
38 H 0.078 0.922
39 H 0.231 0.769
40 H 0.167 0.833
41 H 0.166 0.834
42 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -8.301 6.478 -21.680 24.101
hybrid contribution 0.325 0.861 0.855 1.256
sum -7.976 7.339 -20.825 23.477
Atomic orbital electron populations
1.21730 0.95797 1.01582 1.00616 1.22181 0.94782 1.00661 0.96658
0.91341 1.20809 0.83053 0.97112 0.93534 1.44113 1.01750 1.69372
1.16305 1.19209 0.97790 1.35378 0.85812 0.91578 1.25042 0.98582
0.99056 0.96968 1.70029 1.25664 1.40114 1.18862 0.86282 0.79193
0.80114 0.81142 1.21475 1.21775 1.20434 1.20873 0.96730 0.94292
0.86026 1.22398 0.94509 1.01507 0.99635 1.21179 0.94055 0.97280
0.82226 0.89774 1.46307 1.64695 1.14347 1.10077 1.17715 0.78616
0.86565 0.82676 1.90837 1.49258 1.15312 1.84244 1.20127 0.93154
1.06580 1.00213 1.17350 0.77528 0.96713 0.94127 1.91601 1.29925
1.94191 1.94013 1.21191 0.97021 1.03034 0.97310 1.20985 0.91666
0.95575 0.98413 1.21187 1.02082 1.01160 0.94134 1.17345 0.85166
0.94104 0.89123 1.91598 1.68932 1.80301 1.68921 0.92915 0.92486
0.93949 0.88889 0.96064 0.93598 0.92465 0.96111 0.92591 0.92167
0.76860 0.83343 0.83418 0.83345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.22 9.03 37.16 0.34 -1.88 16
2 C -0.12 -2.26 2.46 -90.50 -0.22 -2.48 16
3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
4 C 0.18 4.26 4.59 -3.71 -0.02 4.25 16
5 N -0.59 -14.92 2.99 -172.33 -0.52 -15.43 16
6 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16
7 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16
8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16
9 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16
10 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16
11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
14 C 0.15 3.24 6.52 -3.71 -0.02 3.21 16
15 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16
16 C 0.16 2.81 1.88 -67.89 -0.13 2.68 16
17 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16
18 N -0.71 -10.74 4.36 -54.81 -0.24 -10.98 16
19 C 0.56 9.10 6.51 -12.47 -0.08 9.02 16
20 O -0.52 -10.50 16.77 5.29 0.09 -10.41 16
21 C -0.20 -2.47 5.64 -104.86 -0.59 -3.06 16
22 C 0.16 1.78 7.29 -38.96 -0.28 1.49 16
23 F -0.12 -1.52 16.83 2.25 0.04 -1.48 16
24 C -0.17 -1.18 10.01 -39.56 -0.40 -1.58 16
25 C -0.05 -0.26 10.03 -39.53 -0.40 -0.66 16
26 C -0.17 -1.17 10.01 -39.56 -0.40 -1.57 16
27 C 0.16 1.76 7.29 -38.96 -0.28 1.48 16
28 F -0.12 -1.50 16.83 2.25 0.04 -1.46 16
29 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16
30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
31 H 0.04 0.58 7.36 -51.93 -0.38 0.20 16
32 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16
33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
35 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16
36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
39 H 0.40 5.07 8.29 -40.82 -0.34 4.73 16
40 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16
41 H 0.15 0.29 8.06 -52.49 -0.42 -0.14 16
42 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16
LS Contribution 355.83 15.07 5.36 5.36
Total: -1.00 -32.45 355.83 -8.12 -40.57
By element:
Atomic # 1 Polarization: 7.28 SS G_CDS: -5.62 Total: 1.67 kcal
Atomic # 6 Polarization: 3.87 SS G_CDS: -2.86 Total: 1.01 kcal
Atomic # 7 Polarization: -51.70 SS G_CDS: -0.13 Total: -51.83 kcal
Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal
Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -32.45 -8.12 -40.57 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000944319407.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.712 kcal
(2) G-P(sol) polarization free energy of solvation -32.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.164 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds