Wall clock time and date at job start Tue Mar 31 2020 14:49:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.51763 * 2 1
4 4 C 1.53191 * 109.50106 * 120.08222 * 2 1 3
5 5 N 1.46926 * 108.77614 * 174.58554 * 4 2 1
6 6 C 1.36935 * 120.62843 * 126.41487 * 5 4 2
7 7 H 1.08002 * 119.99852 * 207.67928 * 6 5 4
8 8 C 1.38813 * 120.00109 * 27.67795 * 6 5 4
9 9 N 1.31616 * 119.99841 * 17.35454 * 8 6 5
10 10 Si 1.86800 * 120.00050 * 197.35753 * 8 6 5
11 11 H 1.48505 * 109.47246 * 89.99833 * 10 8 6
12 12 H 1.48494 * 109.47086 * 209.99769 * 10 8 6
13 13 H 1.48500 * 109.47045 * 330.00001 * 10 8 6
14 14 C 1.46926 * 118.74065 * 306.39720 * 5 4 2
15 15 C 1.53188 * 108.77667 * 53.60346 * 14 5 4
16 16 C 1.53038 * 109.49606 * 239.92454 * 2 1 3
17 17 H 1.08994 * 109.46221 * 298.68274 * 16 2 1
18 18 N 1.46499 * 109.46351 * 58.66183 * 16 2 1
19 19 C 1.34771 * 120.00149 * 205.00372 * 18 16 2
20 20 O 1.21584 * 119.99985 * 359.97438 * 19 18 16
21 21 C 1.47543 * 120.00127 * 179.72473 * 19 18 16
22 22 C 1.39900 * 120.19195 * 89.99684 * 21 19 18
23 23 F 1.35101 * 120.09801 * 359.97438 * 22 21 19
24 24 C 1.38224 * 119.80563 * 179.72646 * 22 21 19
25 25 C 1.38304 * 120.18868 * 0.56797 * 24 22 21
26 26 C 1.38304 * 120.38577 * 359.68568 * 25 24 22
27 27 C 1.38219 * 120.18784 * 0.03405 * 26 25 24
28 28 F 1.35101 * 120.09769 * 180.02562 * 27 26 25
29 29 H 1.09007 * 109.46495 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47140 * 300.06944 * 1 2 3
31 31 H 1.08991 * 109.47371 * 60.08053 * 1 2 3
32 32 H 1.08994 * 109.59007 * 294.37804 * 4 2 1
33 33 H 1.09000 * 109.58142 * 54.80245 * 4 2 1
34 34 H 0.97000 * 119.99971 * 180.02562 * 9 8 6
35 35 H 1.08998 * 109.58482 * 173.39433 * 14 5 4
36 36 H 1.09001 * 109.58359 * 293.67837 * 14 5 4
37 37 H 1.09002 * 109.49760 * 185.41374 * 15 14 5
38 38 H 1.09004 * 109.49940 * 65.32320 * 15 14 5
39 39 H 0.97002 * 120.00019 * 24.99188 * 18 16 2
40 40 H 1.08001 * 119.90180 * 180.27718 * 24 22 21
41 41 H 1.08000 * 119.80685 * 179.70245 * 25 24 22
42 42 H 1.08000 * 119.90900 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8942 1.0274 0.0000
4 6 2.0414 -0.7238 1.2495
5 7 3.5047 -0.8291 1.1694
6 6 4.2936 -0.3793 2.1943
7 1 5.2989 -0.0398 1.9929
8 6 3.8013 -0.3597 3.4921
9 7 2.7378 -1.0699 3.8032
10 14 4.6482 0.6746 4.7968
11 1 4.0517 2.0345 4.8147
12 1 4.4691 0.0381 6.1264
13 1 6.0970 0.7737 4.4865
14 6 4.1053 -1.4265 -0.0310
15 6 3.5708 -0.6948 -1.2661
16 6 2.0407 -0.7230 -1.2484
17 1 1.6970 -1.7572 -1.2353
18 7 1.5265 -0.0528 -2.4453
19 6 1.3983 -0.7380 -3.5988
20 8 1.7100 -1.9123 -3.6461
21 6 0.8747 -0.0646 -4.8026
22 6 1.7496 0.5723 -5.6892
23 9 3.0785 0.5737 -5.4458
24 6 1.2509 1.1959 -6.8175
25 6 -0.1098 1.2013 -7.0651
26 6 -0.9823 0.5786 -6.1912
27 6 -0.5002 -0.0546 -5.0611
28 9 -1.3542 -0.6628 -4.2089
29 1 -0.3632 -1.0278 0.0005
30 1 -0.3633 0.5149 0.8894
31 1 -0.3633 0.5125 -0.8906
32 1 1.7638 -0.1581 2.1389
33 1 1.6053 -1.7216 1.2978
34 1 2.3935 -1.0559 4.7100
35 1 5.1896 -1.3244 0.0136
36 1 3.8397 -2.4823 -0.0857
37 1 3.9334 -1.1894 -2.1672
38 1 3.9159 0.3391 -1.2542
39 1 1.2780 0.8841 -2.4076
40 1 1.9254 1.6842 -7.5053
41 1 -0.4932 1.6945 -7.9461
42 1 -2.0434 0.5872 -6.3922
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000944319407.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:49:37
Heat of formation + Delta-G solvation = -102.286022 kcal
Electronic energy + Delta-G solvation = -27935.371792 eV
Core-core repulsion = 23743.902566 eV
Total energy + Delta-G solvation = -4191.469226 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-50.19753 -50.17441 -41.37758 -39.76979 -38.95182 -36.25677 -34.15331 -33.58045
-32.51087 -31.44040 -31.01415 -27.61405 -27.12420 -25.33671 -23.93575 -23.77141
-22.58375 -21.80957 -21.06936 -19.48077 -18.96922 -18.46373 -18.42528 -17.71032
-16.99906 -16.78400 -16.74528 -16.48374 -16.37549 -15.83332 -15.64717 -15.57828
-15.41813 -15.09475 -14.72972 -14.64362 -14.30403 -13.84638 -13.61343 -13.27041
-13.09450 -13.00899 -12.96189 -12.94228 -12.89871 -12.60944 -12.46917 -12.08561
-11.89412 -11.82206 -11.66364 -11.41013 -11.13934 -10.58926 -10.21178 -10.18912
-9.88107 -8.75381 -7.89900 -5.36035 -0.33534 -0.12257 1.23333 1.47724
1.48357 1.57957 1.91172 2.26351 2.50076 2.64965 3.24473 3.27129
3.35073 3.59344 3.68141 3.73725 3.76800 3.94643 4.11995 4.13142
4.26473 4.49976 4.55448 4.62597 4.63872 4.65714 4.76647 4.87482
4.89809 4.91296 4.98373 5.01133 5.05360 5.12411 5.22678 5.26939
5.37471 5.45016 5.62481 5.64202 5.68229 6.29614 6.36217 6.94996
7.11273 7.79878 8.33604 9.17178
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.023529 B = 0.003122 C = 0.002959
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1189.719933 B = 8965.170699 C = 9461.001340
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.107 4.107
3 H 0.076 0.924
4 C 0.190 3.810
5 N -0.610 5.610
6 C -0.266 4.266
7 H 0.068 0.932
8 C -0.048 4.048
9 N -0.934 5.934
10 Si 0.970 3.030
11 H -0.282 1.282
12 H -0.296 1.296
13 H -0.270 1.270
14 C 0.146 3.854
15 C -0.125 4.125
16 C 0.166 3.834
17 H 0.057 0.943
18 N -0.694 5.694
19 C 0.561 3.439
20 O -0.571 6.571
21 C -0.222 4.222
22 C 0.139 3.861
23 F -0.138 7.138
24 C -0.151 4.151
25 C -0.024 4.024
26 C -0.150 4.150
27 C 0.140 3.860
28 F -0.138 7.138
29 H 0.042 0.958
30 H 0.061 0.939
31 H 0.070 0.930
32 H 0.066 0.934
33 H -0.008 1.008
34 H 0.251 0.749
35 H 0.060 0.940
36 H 0.007 0.993
37 H 0.057 0.943
38 H 0.068 0.932
39 H 0.412 0.588
40 H 0.179 0.821
41 H 0.198 0.802
42 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.488 10.265 -24.884 28.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.127 4.127
3 H 0.094 0.906
4 C 0.063 3.937
5 N -0.332 5.332
6 C -0.396 4.396
7 H 0.086 0.914
8 C -0.244 4.244
9 N -0.580 5.580
10 Si 0.798 3.202
11 H -0.208 1.208
12 H -0.222 1.222
13 H -0.194 1.194
14 C 0.020 3.980
15 C -0.165 4.165
16 C 0.062 3.938
17 H 0.075 0.925
18 N -0.343 5.343
19 C 0.346 3.654
20 O -0.450 6.450
21 C -0.227 4.227
22 C 0.119 3.881
23 F -0.117 7.117
24 C -0.169 4.169
25 C -0.042 4.042
26 C -0.169 4.169
27 C 0.120 3.880
28 F -0.116 7.116
29 H 0.061 0.939
30 H 0.080 0.920
31 H 0.089 0.911
32 H 0.084 0.916
33 H 0.010 0.990
34 H 0.061 0.939
35 H 0.079 0.921
36 H 0.025 0.975
37 H 0.075 0.925
38 H 0.087 0.913
39 H 0.249 0.751
40 H 0.196 0.804
41 H 0.216 0.784
42 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -9.286 9.379 -24.681 27.988
hybrid contribution 0.610 -0.055 1.665 1.774
sum -8.676 9.323 -23.016 26.304
Atomic orbital electron populations
1.21671 0.93566 1.01516 1.02229 1.21913 0.96534 1.00000 0.94298
0.90572 1.20599 0.82490 0.95654 0.94909 1.44372 1.02304 1.69816
1.16756 1.19529 0.98207 1.35222 0.86655 0.91431 1.25824 0.99461
1.00160 0.98934 1.70191 1.27186 1.41539 1.19063 0.85223 0.78561
0.78377 0.78003 1.20806 1.22219 1.19445 1.20940 0.96981 0.93803
0.86313 1.22193 0.95058 1.01368 0.97920 1.20787 0.93464 0.96149
0.83387 0.92457 1.46063 1.64262 1.14899 1.09126 1.18318 0.77349
0.86024 0.83662 1.90798 1.51372 1.17623 1.85205 1.19910 0.94489
1.08898 0.99446 1.17713 0.76616 0.98262 0.95492 1.91549 1.31265
1.94531 1.94335 1.21625 0.98445 1.01153 0.95703 1.21600 0.90419
0.93375 0.98802 1.21624 1.03996 0.99062 0.92204 1.17701 0.84252
0.95567 0.90501 1.91549 1.69259 1.80980 1.69840 0.93869 0.91977
0.91147 0.91559 0.98969 0.93950 0.92128 0.97512 0.92453 0.91310
0.75084 0.80362 0.78450 0.80314
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.18 9.03 71.98 0.65 -3.53 16
2 C -0.11 -4.02 2.46 -10.72 -0.03 -4.04 16
3 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16
4 C 0.19 9.32 4.59 86.36 0.40 9.72 16
5 N -0.61 -31.71 2.99 -699.12 -2.09 -33.80 16
6 C -0.27 -14.88 9.58 84.03 0.81 -14.07 16
7 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16
8 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16
9 N -0.93 -55.62 11.19 21.65 0.24 -55.38 16
10 Si 0.97 44.95 29.59 68.60 2.03 46.98 16
11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
12 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16
13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
14 C 0.15 6.64 6.52 86.36 0.56 7.20 16
15 C -0.13 -4.85 5.65 30.67 0.17 -4.68 16
16 C 0.17 6.18 1.88 45.02 0.08 6.26 16
17 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16
18 N -0.69 -21.25 4.36 -445.58 -1.94 -23.19 16
19 C 0.56 18.62 6.51 86.70 0.56 19.19 16
20 O -0.57 -24.15 16.77 -3.98 -0.07 -24.22 16
21 C -0.22 -5.49 5.64 -20.02 -0.11 -5.60 16
22 C 0.14 2.81 7.29 22.67 0.17 2.98 16
23 F -0.14 -3.47 16.83 44.97 0.76 -2.71 16
24 C -0.15 -1.50 10.01 22.28 0.22 -1.28 16
25 C -0.02 -0.12 10.03 22.30 0.22 0.10 16
26 C -0.15 -1.48 10.01 22.28 0.22 -1.25 16
27 C 0.14 2.80 7.29 22.67 0.17 2.96 16
28 F -0.14 -3.40 16.83 44.97 0.76 -2.64 16
29 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16
30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
31 H 0.07 1.84 7.36 -2.39 -0.02 1.82 16
32 H 0.07 3.61 6.04 -2.39 -0.01 3.60 16
33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16
34 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16
35 H 0.06 2.66 7.93 -2.39 -0.02 2.64 16
36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
38 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16
39 H 0.41 10.15 8.29 -92.71 -0.77 9.38 16
40 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16
41 H 0.20 -0.82 8.06 -2.91 -0.02 -0.84 16
42 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16
Total: -1.00 -75.72 355.83 4.48 -71.24
By element:
Atomic # 1 Polarization: 11.79 SS G_CDS: 0.28 Total: 12.07 kcal
Atomic # 6 Polarization: 7.13 SS G_CDS: 4.51 Total: 11.65 kcal
Atomic # 7 Polarization: -108.58 SS G_CDS: -3.80 Total: -112.37 kcal
Atomic # 8 Polarization: -24.15 SS G_CDS: -0.07 Total: -24.22 kcal
Atomic # 9 Polarization: -6.87 SS G_CDS: 1.51 Total: -5.35 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal
Total: -75.72 4.48 -71.24 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000944319407.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.046 kcal
(2) G-P(sol) polarization free energy of solvation -75.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.286 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds