Wall clock time and date at job start Tue Mar 31 2020 14:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49607 * 2 1 4 4 C 1.53184 * 109.52767 * 239.91781 * 2 1 3 5 5 N 1.46935 * 108.77493 * 185.39940 * 4 2 1 6 6 C 1.36935 * 120.62897 * 233.58302 * 5 4 2 7 7 H 1.08005 * 119.99603 * 27.70009 * 6 5 4 8 8 C 1.38806 * 120.00126 * 207.69590 * 6 5 4 9 9 N 1.31614 * 120.00086 * 17.35643 * 8 6 5 10 10 Si 1.86802 * 120.00189 * 197.35767 * 8 6 5 11 11 H 1.48501 * 109.47024 * 59.99917 * 10 8 6 12 12 H 1.48502 * 109.47281 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47155 * 300.00048 * 10 8 6 14 14 C 1.46927 * 118.73713 * 53.60514 * 5 4 2 15 15 C 1.53187 * 108.77552 * 306.39090 * 14 5 4 16 16 C 1.53040 * 109.49335 * 120.05728 * 2 1 3 17 17 H 1.08992 * 109.46349 * 301.37317 * 16 2 1 18 18 N 1.46494 * 109.45973 * 61.35003 * 16 2 1 19 19 C 1.34782 * 119.99934 * 204.99657 * 18 16 2 20 20 O 1.21579 * 120.00016 * 359.97438 * 19 18 16 21 21 C 1.47540 * 120.00069 * 179.97438 * 19 18 16 22 22 C 1.39903 * 120.19019 * 89.72210 * 21 19 18 23 23 F 1.35107 * 120.09549 * 0.02562 * 22 21 19 24 24 C 1.38223 * 119.80555 * 179.79411 * 22 21 19 25 25 C 1.38297 * 120.19169 * 0.48377 * 24 22 21 26 26 C 1.38301 * 120.38496 * 359.74883 * 25 24 22 27 27 C 1.38224 * 120.18809 * 0.02562 * 26 25 24 28 28 F 1.35109 * 120.09700 * 179.97438 * 27 26 25 29 29 H 1.08994 * 109.47556 * 300.00551 * 1 2 3 30 30 H 1.09004 * 109.46945 * 60.00909 * 1 2 3 31 31 H 1.09008 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.58468 * 305.17813 * 4 2 1 33 33 H 1.08991 * 109.59327 * 65.60979 * 4 2 1 34 34 H 0.97002 * 120.00256 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.57838 * 186.60471 * 14 5 4 36 36 H 1.08991 * 109.58674 * 66.18397 * 14 5 4 37 37 H 1.09007 * 109.50303 * 294.68504 * 15 14 5 38 38 H 1.09000 * 109.49820 * 174.58944 * 15 14 5 39 39 H 0.96999 * 120.00134 * 24.99496 * 18 16 2 40 40 H 1.08010 * 119.90230 * 180.21026 * 24 22 21 41 41 H 1.07998 * 119.81013 * 179.72267 * 25 24 22 42 42 H 1.07996 * 119.90961 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5054 -0.8283 -1.1687 6 6 4.2945 -0.3783 -2.1934 7 1 3.9474 0.4214 -2.8310 8 6 5.5403 -0.9498 -2.4126 9 7 5.8295 -2.1201 -1.8846 10 14 6.8065 -0.0577 -3.4569 11 1 7.1183 1.2571 -2.8412 12 1 8.0453 -0.8727 -3.5365 13 1 6.2626 0.1518 -4.8228 14 6 4.1060 -1.4254 0.0319 15 6 3.5708 -0.6938 1.2668 16 6 2.0407 -0.7226 1.2487 17 1 1.6575 -0.2241 2.1390 18 7 1.5793 -2.1128 1.2310 19 6 1.4511 -2.7951 2.3863 20 8 1.7189 -2.2568 3.4431 21 6 0.9858 -4.1951 2.3686 22 6 1.9078 -5.2415 2.2575 23 9 3.2289 -4.9736 2.1663 24 6 1.4634 -6.5503 2.2460 25 6 0.1112 -6.8265 2.3339 26 6 -0.8075 -5.7981 2.4392 27 6 -0.3803 -4.4836 2.4569 28 9 -1.2793 -3.4803 2.5593 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6065 -1.7217 -1.2976 33 1 1.7646 -0.1582 -2.1387 34 1 6.7000 -2.5197 -2.0380 35 1 5.1902 -1.3227 -0.0123 36 1 3.8388 -2.4806 0.0879 37 1 3.9153 0.3403 1.2549 38 1 3.9333 -1.1881 2.1681 39 1 1.3659 -2.5424 0.3879 40 1 2.1741 -7.3595 2.1636 41 1 -0.2295 -7.8513 2.3198 42 1 -1.8617 -6.0225 2.5070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944319412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:46 Heat of formation + Delta-G solvation = -79.487386 kcal Electronic energy + Delta-G solvation = -28613.980556 eV Core-core repulsion = 24423.499953 eV Total energy + Delta-G solvation = -4190.480603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.23762 -49.07388 -40.08351 -38.74126 -37.47012 -34.26814 -32.66565 -31.59285 -31.01316 -30.63335 -29.81172 -25.93320 -25.39910 -24.22848 -23.07369 -22.10840 -21.16513 -20.77996 -18.61397 -18.51139 -17.77515 -17.47244 -16.72599 -16.22714 -15.82873 -15.63658 -15.42289 -15.20489 -14.83110 -14.58149 -14.49542 -14.05874 -13.88463 -13.66716 -13.30635 -13.01548 -12.89311 -12.58522 -12.25815 -12.18979 -12.10962 -12.02290 -11.48446 -11.37470 -11.08697 -10.82866 -10.68734 -10.38174 -10.22415 -10.06913 -9.85737 -9.74127 -9.43933 -9.29763 -9.04214 -8.66186 -8.45703 -6.68754 -5.79278 -3.22341 0.53247 0.69288 2.61332 2.98518 3.32115 3.38047 3.44319 3.45402 3.56762 4.11611 4.35570 4.48395 4.57044 4.65690 4.80796 5.15826 5.30890 5.36215 5.38922 5.48959 5.49796 5.58647 5.61718 5.70002 5.81797 5.88501 5.97846 6.08257 6.15568 6.27784 6.33030 6.40711 6.45022 6.62102 6.65934 6.74536 6.89185 6.94881 7.37348 7.67665 7.70949 7.78828 8.33136 8.43489 9.19783 9.83143 10.39281 11.28694 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.004179 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.844423 B = 6698.678188 C = 7625.995361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.065 0.935 8 C 0.005 3.995 9 N -0.900 5.900 10 Si 0.902 3.098 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.159 3.841 17 H 0.075 0.925 18 N -0.694 5.694 19 C 0.564 3.436 20 O -0.529 6.529 21 C -0.196 4.196 22 C 0.169 3.831 23 F -0.113 7.113 24 C -0.167 4.167 25 C -0.048 4.048 26 C -0.169 4.169 27 C 0.161 3.839 28 F -0.122 7.122 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.012 0.988 33 H 0.058 0.942 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.403 0.597 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.809 -8.460 7.702 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 H 0.102 0.898 4 C 0.025 3.975 5 N -0.313 5.313 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.544 5.544 10 Si 0.732 3.268 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.049 3.951 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.093 0.907 18 N -0.345 5.345 19 C 0.348 3.652 20 O -0.406 6.406 21 C -0.201 4.201 22 C 0.148 3.852 23 F -0.091 7.091 24 C -0.186 4.186 25 C -0.066 4.066 26 C -0.188 4.188 27 C 0.141 3.859 28 F -0.101 7.101 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.239 0.761 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.409 -8.083 8.401 17.769 hybrid contribution 0.740 0.369 -0.916 1.234 sum -12.669 -7.714 7.485 16.614 Atomic orbital electron populations 1.21768 0.95676 1.01364 1.01169 1.21957 0.94622 1.00793 0.96569 0.89801 1.20906 0.86172 0.96048 0.94390 1.44065 0.99084 1.71580 1.16582 1.19124 0.98298 1.12443 1.08679 0.91716 1.25022 0.99840 0.95328 0.99228 1.70026 1.21966 1.14561 1.47886 0.86386 0.81103 0.79175 0.80174 1.21026 1.21659 1.20909 1.20727 0.99338 0.92958 0.82124 1.22578 0.93950 1.02065 1.00889 1.20993 0.95332 0.79938 0.98210 0.90698 1.46102 1.65727 1.14385 1.08240 1.17661 0.78165 0.84576 0.84818 1.90796 1.50130 1.69036 1.30644 1.20082 0.92985 0.95466 1.11568 1.17394 0.77874 0.92278 0.97615 1.91649 1.30347 1.94626 1.92512 1.21215 0.97492 0.94867 1.04978 1.20964 0.91391 0.99693 0.94593 1.21135 1.01897 0.90205 1.05581 1.17311 0.84412 0.85272 0.98953 1.91572 1.66020 1.59635 1.92837 0.93208 0.92651 0.93133 0.97013 0.92387 0.93567 0.89511 0.96322 0.91587 0.92648 0.76100 0.83292 0.83502 0.83491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.06 37.16 0.34 -1.61 16 2 C -0.12 -1.99 2.67 -90.50 -0.24 -2.23 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.15 3.00 5.50 -3.71 -0.02 2.98 16 5 N -0.59 -14.37 3.00 -172.33 -0.52 -14.89 16 6 C -0.26 -6.90 9.58 -15.06 -0.14 -7.04 16 7 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 8 C 0.00 0.13 4.91 -17.44 -0.09 0.04 16 9 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 10 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.17 4.18 5.05 -3.71 -0.02 4.16 16 15 C -0.15 -3.16 5.77 -26.61 -0.15 -3.32 16 16 C 0.16 2.85 2.21 -67.89 -0.15 2.70 16 17 H 0.07 1.36 7.58 -51.93 -0.39 0.96 16 18 N -0.69 -11.92 3.59 -54.81 -0.20 -12.11 16 19 C 0.56 10.05 6.51 -12.47 -0.08 9.97 16 20 O -0.53 -11.05 16.77 5.30 0.09 -10.96 16 21 C -0.20 -2.88 5.64 -104.86 -0.59 -3.47 16 22 C 0.17 2.32 7.29 -38.96 -0.28 2.03 16 23 F -0.11 -1.87 16.83 2.25 0.04 -1.84 16 24 C -0.17 -1.60 10.01 -39.56 -0.40 -1.99 16 25 C -0.05 -0.35 10.03 -39.54 -0.40 -0.75 16 26 C -0.17 -1.45 10.01 -39.56 -0.40 -1.85 16 27 C 0.16 1.97 7.29 -38.96 -0.28 1.69 16 28 F -0.12 -1.62 16.83 2.25 0.04 -1.59 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.68 7.54 -51.92 -0.39 0.29 16 32 H 0.01 0.24 6.64 -51.93 -0.34 -0.11 16 33 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 36 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.40 6.66 6.71 -40.82 -0.27 6.39 16 40 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -31.95 351.90 -8.02 -39.97 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.46 Total: 3.63 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.91 Total: 1.30 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.09 Total: -52.38 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.95 -8.02 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944319412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.517 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds