Wall clock time and date at job start Tue Mar 31 2020 14:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.49607 * 2 1 4 4 C 1.53184 * 109.52767 * 239.91781 * 2 1 3 5 5 N 1.46935 * 108.77493 * 185.39940 * 4 2 1 6 6 C 1.36935 * 120.62897 * 233.58302 * 5 4 2 7 7 H 1.08005 * 119.99603 * 27.70009 * 6 5 4 8 8 C 1.38806 * 120.00126 * 207.69590 * 6 5 4 9 9 N 1.31614 * 120.00086 * 17.35643 * 8 6 5 10 10 Si 1.86802 * 120.00189 * 197.35767 * 8 6 5 11 11 H 1.48501 * 109.47024 * 59.99917 * 10 8 6 12 12 H 1.48502 * 109.47281 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47155 * 300.00048 * 10 8 6 14 14 C 1.46927 * 118.73713 * 53.60514 * 5 4 2 15 15 C 1.53187 * 108.77552 * 306.39090 * 14 5 4 16 16 C 1.53040 * 109.49335 * 120.05728 * 2 1 3 17 17 H 1.08992 * 109.46349 * 301.37317 * 16 2 1 18 18 N 1.46494 * 109.45973 * 61.35003 * 16 2 1 19 19 C 1.34782 * 119.99934 * 204.99657 * 18 16 2 20 20 O 1.21579 * 120.00016 * 359.97438 * 19 18 16 21 21 C 1.47540 * 120.00069 * 179.97438 * 19 18 16 22 22 C 1.39903 * 120.19019 * 89.72210 * 21 19 18 23 23 F 1.35107 * 120.09549 * 0.02562 * 22 21 19 24 24 C 1.38223 * 119.80555 * 179.79411 * 22 21 19 25 25 C 1.38297 * 120.19169 * 0.48377 * 24 22 21 26 26 C 1.38301 * 120.38496 * 359.74883 * 25 24 22 27 27 C 1.38224 * 120.18809 * 0.02562 * 26 25 24 28 28 F 1.35109 * 120.09700 * 179.97438 * 27 26 25 29 29 H 1.08994 * 109.47556 * 300.00551 * 1 2 3 30 30 H 1.09004 * 109.46945 * 60.00909 * 1 2 3 31 31 H 1.09008 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.58468 * 305.17813 * 4 2 1 33 33 H 1.08991 * 109.59327 * 65.60979 * 4 2 1 34 34 H 0.97002 * 120.00256 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.57838 * 186.60471 * 14 5 4 36 36 H 1.08991 * 109.58674 * 66.18397 * 14 5 4 37 37 H 1.09007 * 109.50303 * 294.68504 * 15 14 5 38 38 H 1.09000 * 109.49820 * 174.58944 * 15 14 5 39 39 H 0.96999 * 120.00134 * 24.99496 * 18 16 2 40 40 H 1.08010 * 119.90230 * 180.21026 * 24 22 21 41 41 H 1.07998 * 119.81013 * 179.72267 * 25 24 22 42 42 H 1.07996 * 119.90961 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5054 -0.8283 -1.1687 6 6 4.2945 -0.3783 -2.1934 7 1 3.9474 0.4214 -2.8310 8 6 5.5403 -0.9498 -2.4126 9 7 5.8295 -2.1201 -1.8846 10 14 6.8065 -0.0577 -3.4569 11 1 7.1183 1.2571 -2.8412 12 1 8.0453 -0.8727 -3.5365 13 1 6.2626 0.1518 -4.8228 14 6 4.1060 -1.4254 0.0319 15 6 3.5708 -0.6938 1.2668 16 6 2.0407 -0.7226 1.2487 17 1 1.6575 -0.2241 2.1390 18 7 1.5793 -2.1128 1.2310 19 6 1.4511 -2.7951 2.3863 20 8 1.7189 -2.2568 3.4431 21 6 0.9858 -4.1951 2.3686 22 6 1.9078 -5.2415 2.2575 23 9 3.2289 -4.9736 2.1663 24 6 1.4634 -6.5503 2.2460 25 6 0.1112 -6.8265 2.3339 26 6 -0.8075 -5.7981 2.4392 27 6 -0.3803 -4.4836 2.4569 28 9 -1.2793 -3.4803 2.5593 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6065 -1.7217 -1.2976 33 1 1.7646 -0.1582 -2.1387 34 1 6.7000 -2.5197 -2.0380 35 1 5.1902 -1.3227 -0.0123 36 1 3.8388 -2.4806 0.0879 37 1 3.9153 0.3403 1.2549 38 1 3.9333 -1.1881 2.1681 39 1 1.3659 -2.5424 0.3879 40 1 2.1741 -7.3595 2.1636 41 1 -0.2295 -7.8513 2.3198 42 1 -1.8617 -6.0225 2.5070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944319412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:45 Heat of formation + Delta-G solvation = -98.589663 kcal Electronic energy + Delta-G solvation = -28614.808893 eV Core-core repulsion = 24423.499953 eV Total energy + Delta-G solvation = -4191.308940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.19505 -50.16792 -41.47066 -39.81368 -38.89714 -36.06299 -34.15507 -32.97514 -32.62370 -31.44193 -31.38616 -27.44063 -27.19279 -25.38266 -23.93823 -23.77700 -22.84482 -22.06216 -20.22422 -19.57359 -18.90763 -18.61325 -18.44252 -17.35909 -16.91257 -16.78168 -16.73466 -16.47844 -16.32562 -16.00297 -15.71910 -15.54263 -15.39450 -15.14622 -14.81469 -14.58748 -14.28671 -13.83776 -13.60540 -13.21427 -13.09976 -12.99988 -12.99628 -12.90556 -12.73317 -12.56885 -12.41676 -12.25306 -11.99798 -11.73681 -11.54787 -11.27988 -11.14438 -10.54267 -10.20728 -10.17367 -9.88369 -8.70013 -7.87945 -5.33592 -0.33099 -0.12594 1.25584 1.45982 1.49327 1.55312 1.98599 2.27595 2.50417 2.65181 3.27024 3.27388 3.36575 3.63117 3.70770 3.74051 3.77874 4.00042 4.05799 4.12335 4.33285 4.53017 4.58484 4.60432 4.64050 4.70841 4.75582 4.89804 4.91188 4.95348 4.98022 5.03146 5.10935 5.11263 5.25071 5.36379 5.40484 5.49030 5.62443 5.64092 5.69025 6.30240 6.36749 6.94237 7.12397 7.83483 8.35678 9.18065 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.004179 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.844423 B = 6698.678188 C = 7625.995361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 H 0.083 0.917 4 C 0.150 3.850 5 N -0.606 5.606 6 C -0.264 4.264 7 H 0.071 0.929 8 C -0.049 4.049 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.272 1.272 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.163 3.837 17 H 0.078 0.922 18 N -0.690 5.690 19 C 0.562 3.438 20 O -0.570 6.570 21 C -0.225 4.225 22 C 0.132 3.868 23 F -0.143 7.143 24 C -0.156 4.156 25 C -0.024 4.024 26 C -0.149 4.149 27 C 0.144 3.856 28 F -0.133 7.133 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.249 0.751 35 H 0.048 0.952 36 H -0.003 1.003 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.406 0.594 40 H 0.173 0.827 41 H 0.200 0.800 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.536 -9.723 7.295 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.102 0.898 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.394 4.394 7 H 0.089 0.911 8 C -0.244 4.244 9 N -0.580 5.580 10 Si 0.794 3.206 11 H -0.207 1.207 12 H -0.223 1.223 13 H -0.198 1.198 14 C 0.064 3.936 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.096 0.904 18 N -0.340 5.340 19 C 0.348 3.652 20 O -0.450 6.450 21 C -0.230 4.230 22 C 0.112 3.888 23 F -0.122 7.122 24 C -0.174 4.174 25 C -0.042 4.042 26 C -0.167 4.167 27 C 0.124 3.876 28 F -0.111 7.111 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.015 0.985 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.242 0.758 40 H 0.191 0.809 41 H 0.217 0.783 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.180 -9.336 7.975 20.311 hybrid contribution 1.513 0.668 -0.773 1.826 sum -14.667 -8.667 7.201 18.496 Atomic orbital electron populations 1.21694 0.92683 1.02053 1.02631 1.21810 0.96925 0.99858 0.93964 0.89829 1.21078 0.83513 0.96799 0.96188 1.44256 1.01005 1.71531 1.16083 1.19495 0.98877 1.12256 1.08757 0.91133 1.25773 1.01711 0.95984 1.00947 1.70189 1.21937 1.16107 1.49740 0.85375 0.78413 0.77806 0.79052 1.20657 1.22316 1.19774 1.20361 0.97168 0.92259 0.83808 1.22402 0.96195 1.01292 0.98461 1.20897 0.93190 0.80872 0.99136 0.90385 1.46067 1.65349 1.14083 1.08455 1.18217 0.77043 0.85886 0.84081 1.90750 1.51927 1.70431 1.31883 1.19971 0.94633 0.93564 1.14851 1.17877 0.76649 0.93955 1.00331 1.91569 1.32437 1.94997 1.93180 1.21622 0.99357 0.93353 1.03094 1.21593 0.89735 1.01767 0.91077 1.21638 1.04085 0.88356 1.02623 1.17614 0.83215 0.86606 1.00164 1.91540 1.66038 1.60476 1.93096 0.92100 0.90832 0.92853 0.96474 0.91792 0.94242 0.93324 0.98524 0.91413 0.93857 0.75758 0.80907 0.78307 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.06 71.98 0.65 -2.71 16 2 C -0.11 -3.43 2.67 -10.72 -0.03 -3.46 16 3 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.15 5.87 5.50 86.36 0.48 6.34 16 5 N -0.61 -30.08 3.00 -699.12 -2.09 -32.17 16 6 C -0.26 -14.38 9.58 84.03 0.81 -13.58 16 7 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 8 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 9 N -0.93 -55.98 11.19 21.65 0.24 -55.74 16 10 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 C 0.19 9.60 5.05 86.36 0.44 10.04 16 15 C -0.14 -6.14 5.77 30.67 0.18 -5.96 16 16 C 0.16 5.94 2.21 45.02 0.10 6.04 16 17 H 0.08 2.85 7.58 -2.39 -0.02 2.83 16 18 N -0.69 -24.39 3.59 -445.59 -1.60 -25.99 16 19 C 0.56 20.87 6.51 86.70 0.56 21.43 16 20 O -0.57 -25.00 16.77 -3.96 -0.07 -25.07 16 21 C -0.23 -6.73 5.64 -20.02 -0.11 -6.85 16 22 C 0.13 3.67 7.29 22.67 0.17 3.83 16 23 F -0.14 -5.08 16.83 44.97 0.76 -4.32 16 24 C -0.16 -2.60 10.01 22.28 0.22 -2.37 16 25 C -0.02 -0.24 10.03 22.30 0.22 -0.01 16 26 C -0.15 -1.94 10.01 22.28 0.22 -1.71 16 27 C 0.14 3.33 7.29 22.67 0.17 3.50 16 28 F -0.13 -3.40 16.83 44.97 0.76 -2.64 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.05 1.33 7.54 -2.38 -0.02 1.31 16 32 H 0.02 0.67 6.64 -2.39 -0.02 0.65 16 33 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.05 2.82 6.04 -2.39 -0.01 2.80 16 36 H 0.00 -0.18 7.74 -2.39 -0.02 -0.20 16 37 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.41 13.76 6.71 -92.71 -0.62 13.13 16 40 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 42 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -74.52 351.90 4.94 -69.58 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.43 Total: 17.00 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.48 Total: 12.23 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -3.45 Total: -113.91 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.07 Total: -25.07 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 1.51 Total: -6.97 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -74.52 4.94 -69.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944319412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.014 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds