Wall clock time and date at job start Tue Mar 31 2020 14:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.70552 * 2 1 4 4 C 1.53196 * 109.58299 * 239.64324 * 2 1 3 5 5 C 1.53043 * 109.31206 * 185.57988 * 4 2 1 6 6 H 1.08998 * 109.46074 * 301.35993 * 5 4 2 7 7 N 1.46495 * 109.46138 * 181.38530 * 5 4 2 8 8 C 1.34772 * 120.00380 * 155.27279 * 7 5 4 9 9 O 1.21592 * 119.99486 * 359.73273 * 8 7 5 10 10 C 1.47569 * 120.00544 * 179.72476 * 8 7 5 11 11 C 1.39730 * 120.13605 * 359.72723 * 10 8 7 12 12 C 1.37742 * 119.89940 * 179.71910 * 11 10 8 13 13 C 1.38755 * 120.19363 * 0.58231 * 12 11 10 14 14 F 1.35103 * 119.86171 * 179.72000 * 13 12 11 15 15 C 1.38495 * 120.28479 * 359.69088 * 13 12 11 16 16 C 1.38197 * 120.09321 * 0.02562 * 15 13 12 17 17 F 1.35100 * 120.09821 * 180.02562 * 16 15 13 18 18 C 1.53045 * 109.53770 * 61.36553 * 5 4 2 19 19 C 1.53191 * 109.31172 * 298.63879 * 18 5 4 20 20 N 1.46923 * 108.78192 * 54.63248 * 19 18 5 21 21 C 1.36930 * 120.63276 * 126.36835 * 20 19 18 22 22 H 1.08000 * 120.00441 * 209.07433 * 21 20 19 23 23 C 1.38815 * 119.99741 * 29.07251 * 21 20 19 24 24 N 1.31615 * 120.00411 * 15.03839 * 23 21 20 25 25 Si 1.86806 * 119.99966 * 195.03793 * 23 21 20 26 26 H 1.48499 * 109.47072 * 59.99783 * 25 23 21 27 27 H 1.48490 * 109.47325 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47205 * 300.00358 * 25 23 21 29 29 H 1.08994 * 109.47892 * 180.35514 * 1 2 3 30 30 H 1.09004 * 109.47146 * 300.35515 * 1 2 3 31 31 H 1.09005 * 109.47410 * 60.34990 * 1 2 3 32 32 H 1.08999 * 109.49857 * 65.62898 * 4 2 1 33 33 H 1.09004 * 109.52471 * 305.54783 * 4 2 1 34 34 H 0.97007 * 120.00200 * 335.00116 * 7 5 4 35 35 H 1.07997 * 120.05336 * 0.02562 * 11 10 8 36 36 H 1.08002 * 119.90425 * 180.27459 * 12 11 10 37 37 H 1.08004 * 119.95403 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.49371 * 58.58311 * 18 5 4 39 39 H 1.08998 * 109.49871 * 178.68385 * 18 5 4 40 40 H 1.09008 * 109.58146 * 294.84333 * 19 18 5 41 41 H 1.09003 * 109.70438 * 174.49682 * 19 18 5 42 42 H 0.96998 * 120.00095 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7294 -1.2455 5 6 3.5674 -0.8481 -1.1702 6 1 4.0061 0.1471 -1.0991 7 7 4.0650 -1.5159 -2.3754 8 6 5.3309 -1.3067 -2.7878 9 8 6.0585 -0.5599 -2.1622 10 6 5.8342 -1.9841 -3.9984 11 6 5.0024 -2.8475 -4.7162 12 6 5.4753 -3.4727 -5.8488 13 6 6.7790 -3.2571 -6.2721 14 9 7.2377 -3.8783 -7.3808 15 6 7.6120 -2.4074 -5.5635 16 6 7.1479 -1.7694 -4.4288 17 9 7.9602 -0.9401 -3.7377 18 6 3.9568 -1.6659 0.0634 19 6 3.4649 -0.9471 1.3237 20 7 2.0224 -0.6996 1.1945 21 6 1.1536 -1.1135 2.1685 22 1 0.1361 -1.3687 1.9116 23 6 1.5805 -1.2050 3.4862 24 7 2.7030 -0.6258 3.8561 25 14 0.5620 -2.1504 4.7345 26 1 0.4339 -3.5646 4.2998 27 1 1.2297 -2.0980 6.0598 28 1 -0.7879 -1.5398 4.8364 29 1 -0.3635 -1.0275 0.0064 30 1 -0.3633 0.5194 0.8868 31 1 -0.3634 0.5084 -0.8931 32 1 1.7659 -0.1669 -2.1369 33 1 1.6028 -1.7254 -1.2919 34 1 3.4846 -2.1118 -2.8745 35 1 3.9887 -3.0205 -4.3863 36 1 4.8311 -4.1366 -6.4061 37 1 8.6256 -2.2431 -5.8980 38 1 3.4980 -2.6530 0.0052 39 1 5.0411 -1.7698 0.1036 40 1 3.9903 0.0018 1.4316 41 1 3.6520 -1.5698 2.1986 42 1 3.0012 -0.6895 4.7769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947995231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:41 Heat of formation + Delta-G solvation = -78.823853 kcal Electronic energy + Delta-G solvation = -27295.192540 eV Core-core repulsion = 23104.740709 eV Total energy + Delta-G solvation = -4190.451830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.50134 -49.16443 -40.22761 -38.63277 -37.50935 -34.68564 -32.56652 -31.96445 -31.16341 -30.73485 -29.32930 -26.41214 -25.06766 -24.15348 -23.43679 -22.04833 -21.25312 -20.17830 -19.41373 -18.66482 -17.84612 -17.47774 -16.41451 -16.32578 -16.10994 -15.67822 -15.62801 -15.27190 -14.92654 -14.77886 -14.61389 -14.11109 -13.93323 -13.65000 -13.39172 -13.24117 -12.85664 -12.79202 -12.65956 -12.26809 -11.95954 -11.61693 -11.24528 -11.11592 -10.94633 -10.90818 -10.66494 -10.35151 -10.17112 -10.06529 -9.94908 -9.75293 -9.60668 -9.40955 -9.20216 -8.75181 -8.42644 -6.65200 -5.77065 -3.21375 0.15430 0.54490 2.46725 3.10410 3.35190 3.37549 3.38299 3.44256 3.44645 3.91567 4.05457 4.33521 4.42690 4.48685 4.65953 5.14341 5.25696 5.29011 5.36210 5.41032 5.44631 5.51156 5.53768 5.55724 5.74281 5.96836 6.13055 6.20430 6.21986 6.29265 6.37531 6.40104 6.48030 6.61562 6.78161 6.84489 7.01007 7.07956 7.37628 7.56660 7.70550 7.81709 8.24858 8.46805 9.22224 9.85801 10.42620 11.31522 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.002671 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.041386 B =10480.322002 C =10763.704133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.084 0.916 7 N -0.716 5.716 8 C 0.553 3.447 9 O -0.521 6.521 10 C -0.178 4.178 11 C -0.029 4.029 12 C -0.172 4.172 13 C 0.152 3.848 14 F -0.127 7.127 15 C -0.204 4.204 16 C 0.190 3.810 17 F -0.104 7.104 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.587 5.587 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.003 3.997 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.393 0.607 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.091 0.909 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -5.718 -21.270 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.102 0.898 7 N -0.367 5.367 8 C 0.338 3.662 9 O -0.397 6.397 10 C -0.183 4.183 11 C -0.047 4.047 12 C -0.191 4.191 13 C 0.132 3.868 14 F -0.106 7.106 15 C -0.224 4.224 16 C 0.169 3.831 17 F -0.081 7.081 18 C -0.187 4.187 19 C 0.048 3.952 20 N -0.311 5.311 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.109 0.891 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.106 -5.130 -20.614 21.847 hybrid contribution -0.404 -0.832 0.297 0.972 sum 4.702 -5.962 -20.317 21.689 Atomic orbital electron populations 1.21790 0.95728 1.01435 1.00327 1.20352 0.93080 0.93600 0.86600 0.95505 1.22393 0.93494 1.01697 0.99811 1.21114 0.94350 0.96862 0.82890 0.89817 1.46224 1.12486 1.48599 1.29357 1.17846 0.82662 0.81927 0.83754 1.90877 1.56027 1.36637 1.56184 1.20325 0.94221 1.03827 0.99886 1.21095 0.99464 0.91919 0.92265 1.21135 0.94709 1.04093 0.99172 1.17496 0.92487 0.92859 0.83934 1.91558 1.89152 1.80254 1.49613 1.21034 1.02701 1.01629 0.97020 1.17289 0.87202 0.88965 0.89597 1.91652 1.71096 1.67943 1.77457 1.22583 0.99833 0.99575 0.96748 1.20765 0.83182 0.97382 0.93886 1.44162 1.02997 1.64859 1.19068 1.19124 0.94836 1.37990 0.86263 0.91254 1.25101 0.97809 0.99694 0.96989 1.70000 1.23334 1.44375 1.16970 0.86395 0.79627 0.80125 0.80737 1.21091 1.21687 1.20929 0.92750 0.91856 0.94301 0.92615 0.91754 0.77226 0.83410 0.83289 0.82738 0.92621 0.92813 0.96149 0.89074 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.94 37.16 0.30 -2.11 16 2 C 0.17 3.39 3.50 -67.60 -0.24 3.15 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.13 4.84 -26.61 -0.13 -2.26 16 5 C 0.15 2.54 2.41 -67.89 -0.16 2.38 16 6 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 7 N -0.72 -9.56 5.03 -54.80 -0.28 -9.84 16 8 C 0.55 8.22 7.73 -12.46 -0.10 8.13 16 9 O -0.52 -10.07 15.00 5.29 0.08 -9.99 16 10 C -0.18 -2.03 5.88 -104.91 -0.62 -2.64 16 11 C -0.03 -0.22 9.53 -39.21 -0.37 -0.59 16 12 C -0.17 -1.15 10.01 -39.57 -0.40 -1.54 16 13 C 0.15 1.21 7.30 -39.30 -0.29 0.92 16 14 F -0.13 -1.04 17.26 2.25 0.04 -1.01 16 15 C -0.20 -1.80 9.99 -39.50 -0.39 -2.19 16 16 C 0.19 2.20 7.28 -38.97 -0.28 1.92 16 17 F -0.10 -1.48 15.55 2.25 0.04 -1.45 16 18 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 19 C 0.17 4.16 5.29 -3.71 -0.02 4.14 16 20 N -0.59 -14.12 2.99 -164.78 -0.49 -14.61 16 21 C -0.25 -6.62 8.61 -15.06 -0.13 -6.75 16 22 H 0.07 1.76 6.20 -52.49 -0.33 1.43 16 23 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 24 N -0.90 -26.01 11.14 55.49 0.62 -25.40 16 25 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.05 0.97 7.40 -51.93 -0.38 0.58 16 30 H 0.06 1.23 7.66 -51.93 -0.40 0.84 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.39 3.84 6.63 -40.82 -0.27 3.57 16 35 H 0.15 0.74 6.40 -52.49 -0.34 0.40 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 41 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -31.67 348.13 -8.21 -39.88 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.36 Total: 1.33 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.07 Total: -0.48 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.15 Total: -49.85 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.07 Total: -2.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.67 -8.21 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947995231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.942 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds