Wall clock time and date at job start Tue Mar 31 2020 14:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.70552 * 2 1 4 4 C 1.53196 * 109.58299 * 239.64324 * 2 1 3 5 5 C 1.53043 * 109.31206 * 185.57988 * 4 2 1 6 6 H 1.08998 * 109.46074 * 301.35993 * 5 4 2 7 7 N 1.46495 * 109.46138 * 181.38530 * 5 4 2 8 8 C 1.34772 * 120.00380 * 155.27279 * 7 5 4 9 9 O 1.21592 * 119.99486 * 359.73273 * 8 7 5 10 10 C 1.47569 * 120.00544 * 179.72476 * 8 7 5 11 11 C 1.39730 * 120.13605 * 359.72723 * 10 8 7 12 12 C 1.37742 * 119.89940 * 179.71910 * 11 10 8 13 13 C 1.38755 * 120.19363 * 0.58231 * 12 11 10 14 14 F 1.35103 * 119.86171 * 179.72000 * 13 12 11 15 15 C 1.38495 * 120.28479 * 359.69088 * 13 12 11 16 16 C 1.38197 * 120.09321 * 0.02562 * 15 13 12 17 17 F 1.35100 * 120.09821 * 180.02562 * 16 15 13 18 18 C 1.53045 * 109.53770 * 61.36553 * 5 4 2 19 19 C 1.53191 * 109.31172 * 298.63879 * 18 5 4 20 20 N 1.46923 * 108.78192 * 54.63248 * 19 18 5 21 21 C 1.36930 * 120.63276 * 126.36835 * 20 19 18 22 22 H 1.08000 * 120.00441 * 209.07433 * 21 20 19 23 23 C 1.38815 * 119.99741 * 29.07251 * 21 20 19 24 24 N 1.31615 * 120.00411 * 15.03839 * 23 21 20 25 25 Si 1.86806 * 119.99966 * 195.03793 * 23 21 20 26 26 H 1.48499 * 109.47072 * 59.99783 * 25 23 21 27 27 H 1.48490 * 109.47325 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47205 * 300.00358 * 25 23 21 29 29 H 1.08994 * 109.47892 * 180.35514 * 1 2 3 30 30 H 1.09004 * 109.47146 * 300.35515 * 1 2 3 31 31 H 1.09005 * 109.47410 * 60.34990 * 1 2 3 32 32 H 1.08999 * 109.49857 * 65.62898 * 4 2 1 33 33 H 1.09004 * 109.52471 * 305.54783 * 4 2 1 34 34 H 0.97007 * 120.00200 * 335.00116 * 7 5 4 35 35 H 1.07997 * 120.05336 * 0.02562 * 11 10 8 36 36 H 1.08002 * 119.90425 * 180.27459 * 12 11 10 37 37 H 1.08004 * 119.95403 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.49371 * 58.58311 * 18 5 4 39 39 H 1.08998 * 109.49871 * 178.68385 * 18 5 4 40 40 H 1.09008 * 109.58146 * 294.84333 * 19 18 5 41 41 H 1.09003 * 109.70438 * 174.49682 * 19 18 5 42 42 H 0.96998 * 120.00095 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7294 -1.2455 5 6 3.5674 -0.8481 -1.1702 6 1 4.0061 0.1471 -1.0991 7 7 4.0650 -1.5159 -2.3754 8 6 5.3309 -1.3067 -2.7878 9 8 6.0585 -0.5599 -2.1622 10 6 5.8342 -1.9841 -3.9984 11 6 5.0024 -2.8475 -4.7162 12 6 5.4753 -3.4727 -5.8488 13 6 6.7790 -3.2571 -6.2721 14 9 7.2377 -3.8783 -7.3808 15 6 7.6120 -2.4074 -5.5635 16 6 7.1479 -1.7694 -4.4288 17 9 7.9602 -0.9401 -3.7377 18 6 3.9568 -1.6659 0.0634 19 6 3.4649 -0.9471 1.3237 20 7 2.0224 -0.6996 1.1945 21 6 1.1536 -1.1135 2.1685 22 1 0.1361 -1.3687 1.9116 23 6 1.5805 -1.2050 3.4862 24 7 2.7030 -0.6258 3.8561 25 14 0.5620 -2.1504 4.7345 26 1 0.4339 -3.5646 4.2998 27 1 1.2297 -2.0980 6.0598 28 1 -0.7879 -1.5398 4.8364 29 1 -0.3635 -1.0275 0.0064 30 1 -0.3633 0.5194 0.8868 31 1 -0.3634 0.5084 -0.8931 32 1 1.7659 -0.1669 -2.1369 33 1 1.6028 -1.7254 -1.2919 34 1 3.4846 -2.1118 -2.8745 35 1 3.9887 -3.0205 -4.3863 36 1 4.8311 -4.1366 -6.4061 37 1 8.6256 -2.2431 -5.8980 38 1 3.4980 -2.6530 0.0052 39 1 5.0411 -1.7698 0.1036 40 1 3.9903 0.0018 1.4316 41 1 3.6520 -1.5698 2.1986 42 1 3.0012 -0.6895 4.7769 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947995231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:40 Heat of formation + Delta-G solvation = -98.502291 kcal Electronic energy + Delta-G solvation = -27296.045861 eV Core-core repulsion = 23104.740709 eV Total energy + Delta-G solvation = -4191.305151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.13631 -50.09239 -41.33273 -39.70953 -38.87634 -36.17501 -34.27609 -33.26818 -32.23719 -31.73986 -30.83746 -27.96505 -26.74995 -25.16196 -24.27598 -23.60573 -22.55370 -21.52988 -20.98826 -19.49075 -18.83986 -18.33202 -18.14659 -17.21074 -17.14844 -16.87801 -16.63479 -16.46388 -16.04359 -15.90024 -15.68284 -15.53325 -15.45524 -14.98723 -14.71296 -14.53966 -14.33985 -14.15266 -13.52535 -13.31516 -13.04519 -12.92797 -12.72387 -12.66123 -12.60436 -12.55329 -12.34441 -12.10769 -11.83464 -11.70240 -11.50405 -11.38006 -10.96276 -10.53473 -10.29843 -10.12472 -9.84115 -8.63799 -7.81958 -5.28671 -0.60459 -0.10317 1.49084 1.51149 1.57604 1.58849 1.99527 2.44906 2.54342 2.68414 3.20247 3.34004 3.43491 3.51131 3.63222 3.78352 3.88022 4.00113 4.07259 4.27884 4.40328 4.56233 4.60450 4.63246 4.70914 4.77062 4.78110 4.84172 4.90171 4.91562 4.97945 5.08825 5.11007 5.17965 5.40148 5.46471 5.55254 5.57091 5.58285 5.73219 5.74568 6.44480 6.49367 7.16712 7.18568 7.90751 8.43453 9.25349 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.002671 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.041386 B =10480.322002 C =10763.704133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.009 0.991 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.054 0.946 7 N -0.698 5.698 8 C 0.550 3.450 9 O -0.577 6.577 10 C -0.195 4.195 11 C -0.013 4.013 12 C -0.153 4.153 13 C 0.156 3.844 14 F -0.126 7.126 15 C -0.201 4.201 16 C 0.161 3.839 17 F -0.131 7.131 18 C -0.131 4.131 19 C 0.183 3.817 20 N -0.603 5.603 21 C -0.248 4.248 22 H 0.083 0.917 23 C -0.059 4.059 24 N -0.943 5.943 25 Si 0.965 3.035 26 H -0.276 1.276 27 H -0.302 1.302 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.416 0.584 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.167 0.833 38 H 0.066 0.934 39 H 0.041 0.959 40 H -0.016 1.016 41 H 0.056 0.944 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -8.047 -24.826 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.026 0.974 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.073 0.927 7 N -0.350 5.350 8 C 0.338 3.662 9 O -0.457 6.457 10 C -0.200 4.200 11 C -0.032 4.032 12 C -0.172 4.172 13 C 0.136 3.864 14 F -0.104 7.104 15 C -0.220 4.220 16 C 0.140 3.860 17 F -0.109 7.109 18 C -0.171 4.171 19 C 0.056 3.944 20 N -0.327 5.327 21 C -0.378 4.378 22 H 0.100 0.900 23 C -0.253 4.253 24 N -0.590 5.590 25 Si 0.793 3.207 26 H -0.202 1.202 27 H -0.229 1.229 28 H -0.199 1.199 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.255 0.745 35 H 0.199 0.801 36 H 0.204 0.796 37 H 0.184 0.816 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.002 0.998 41 H 0.074 0.926 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.593 -7.492 -24.242 25.506 hybrid contribution 0.388 -0.098 1.277 1.339 sum 2.981 -7.590 -22.965 24.369 Atomic orbital electron populations 1.21708 0.93696 1.01851 1.01132 1.20658 0.94824 0.92827 0.86525 0.97368 1.22193 0.91881 1.02642 0.98899 1.20707 0.95319 0.95135 0.83128 0.92747 1.45840 1.12508 1.48489 1.28119 1.18404 0.82343 0.81118 0.84309 1.90856 1.57473 1.39191 1.58187 1.20135 0.94819 1.05631 0.99381 1.21414 1.00155 0.89991 0.91595 1.21518 0.94205 1.03127 0.98310 1.17634 0.92962 0.92206 0.83606 1.91573 1.89260 1.80076 1.49487 1.21113 1.03587 1.01261 0.96070 1.17643 0.87516 0.90005 0.90803 1.91581 1.71917 1.69086 1.78317 1.22313 0.98880 0.99807 0.96095 1.20449 0.83727 0.95365 0.94878 1.44427 1.02528 1.65569 1.20130 1.19548 0.95413 1.36236 0.86625 0.89962 1.25894 0.99078 1.01251 0.99096 1.70194 1.25449 1.46655 1.16700 0.85374 0.78270 0.79145 0.77872 1.20157 1.22894 1.19934 0.92342 0.94360 0.90313 0.88885 0.89960 0.74483 0.80066 0.79588 0.81561 0.91507 0.94073 0.99840 0.92554 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.94 71.98 0.57 -3.59 16 2 C 0.16 6.07 3.50 44.97 0.16 6.23 16 3 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 4 C -0.12 -3.35 4.84 30.67 0.15 -3.20 16 5 C 0.16 5.32 2.41 45.02 0.11 5.43 16 6 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 7 N -0.70 -17.09 5.03 -445.54 -2.24 -19.33 16 8 C 0.55 16.12 7.73 86.71 0.67 16.79 16 9 O -0.58 -23.36 15.00 -4.00 -0.06 -23.42 16 10 C -0.20 -4.13 5.88 -20.05 -0.12 -4.25 16 11 C -0.01 -0.14 9.53 22.51 0.21 0.07 16 12 C -0.15 -1.28 10.01 22.28 0.22 -1.06 16 13 C 0.16 1.96 7.30 22.45 0.16 2.12 16 14 F -0.13 -1.63 17.26 44.97 0.78 -0.85 16 15 C -0.20 -3.23 9.99 22.32 0.22 -3.01 16 16 C 0.16 3.69 7.28 22.66 0.17 3.85 16 17 F -0.13 -3.97 15.55 44.97 0.70 -3.27 16 18 C -0.13 -5.19 5.65 30.67 0.17 -5.01 16 19 C 0.18 9.18 5.29 86.36 0.46 9.64 16 20 N -0.60 -29.36 2.99 -675.23 -2.02 -31.38 16 21 C -0.25 -13.05 8.61 84.04 0.72 -12.32 16 22 H 0.08 4.06 6.20 -2.91 -0.02 4.04 16 23 C -0.06 -3.26 4.96 84.86 0.42 -2.84 16 24 N -0.94 -57.05 11.14 21.65 0.24 -56.81 16 25 Si 0.96 44.55 29.58 68.60 2.03 46.58 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H 0.06 1.88 7.40 -2.39 -0.02 1.86 16 30 H 0.04 1.43 7.66 -2.39 -0.02 1.41 16 31 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.42 6.25 6.63 -92.70 -0.61 5.64 16 35 H 0.18 0.69 6.40 -2.91 -0.02 0.67 16 36 H 0.19 0.28 8.06 -2.91 -0.02 0.26 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.07 2.49 8.14 -2.38 -0.02 2.48 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 41 H 0.06 3.21 6.06 -2.39 -0.01 3.19 16 42 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -75.54 348.13 4.18 -71.37 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.45 Total: 8.28 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.30 Total: 8.83 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -4.02 Total: -107.51 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.42 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 1.48 Total: -4.12 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -75.54 4.18 -71.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947995231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.134 kcal (2) G-P(sol) polarization free energy of solvation -75.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds