Wall clock time and date at job start Tue Mar 31 2020 14:41:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.44779 * 2 1
4 4 C 1.53039 * 109.45705 * 240.03585 * 2 1 3
5 5 C 1.53193 * 109.31130 * 178.61190 * 4 2 1
6 6 N 1.46931 * 108.77599 * 54.63405 * 5 4 2
7 7 C 1.36935 * 120.62899 * 126.41199 * 6 5 4
8 8 H 1.08004 * 119.99852 * 331.80827 * 7 6 5
9 9 C 1.38809 * 119.99968 * 151.81091 * 7 6 5
10 10 N 1.31621 * 119.99961 * 343.08702 * 9 7 6
11 11 Si 1.86802 * 120.00263 * 163.08420 * 9 7 6
12 12 H 1.48501 * 109.46771 * 60.00088 * 11 9 7
13 13 H 1.48493 * 109.47122 * 179.97438 * 11 9 7
14 14 H 1.48502 * 109.47263 * 300.00466 * 11 9 7
15 15 C 1.46922 * 118.73834 * 306.39420 * 6 5 4
16 16 C 1.53043 * 109.46186 * 119.96690 * 2 1 3
17 17 H 1.08997 * 109.52123 * 301.35411 * 16 2 1
18 18 N 1.46501 * 109.49347 * 61.43287 * 16 2 1
19 19 C 1.34775 * 119.99616 * 204.83710 * 18 16 2
20 20 O 1.21568 * 120.00363 * 0.02562 * 19 18 16
21 21 C 1.47731 * 120.00055 * 180.02562 * 19 18 16
22 22 C 1.39650 * 120.11187 * 180.02562 * 21 19 18
23 23 C 1.37844 * 119.92747 * 179.97438 * 22 21 19
24 24 C 1.38615 * 120.14799 * 359.97438 * 23 22 21
25 25 F 1.35099 * 119.89006 * 180.02562 * 24 23 22
26 26 C 1.38842 * 120.21622 * 0.04158 * 24 23 22
27 27 F 1.35099 * 119.95731 * 179.70650 * 26 24 23
28 28 C 1.38058 * 120.07375 * 359.97438 * 26 24 23
29 29 H 1.09007 * 109.47056 * 300.03123 * 1 2 3
30 30 H 1.08997 * 109.47510 * 60.03148 * 1 2 3
31 31 H 1.08995 * 109.47079 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.49951 * 58.66798 * 4 2 1
33 33 H 1.08997 * 109.52443 * 298.57741 * 4 2 1
34 34 H 1.08999 * 109.58744 * 294.85199 * 5 4 2
35 35 H 1.08996 * 109.70533 * 174.49247 * 5 4 2
36 36 H 0.97001 * 119.99765 * 179.97438 * 10 9 7
37 37 H 1.08999 * 109.58582 * 293.82176 * 15 6 5
38 38 H 1.09004 * 109.58904 * 173.39350 * 15 6 5
39 39 H 0.96994 * 120.00419 * 24.84265 * 18 16 2
40 40 H 1.08005 * 120.03634 * 359.97438 * 22 21 19
41 41 H 1.07994 * 119.93263 * 179.97438 * 23 22 21
42 42 H 1.07997 * 120.06858 * 179.97438 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8929 1.0278 0.0000
4 6 2.0398 -0.7207 -1.2501
5 6 3.5713 -0.6885 -1.2644
6 7 4.0679 -1.2488 -0.0001
7 6 4.9765 -2.2733 -0.0002
8 1 5.0042 -2.9704 -0.8247
9 6 5.8617 -2.4159 1.0594
10 7 6.0662 -1.4122 1.8859
11 14 6.7629 -4.0325 1.3125
12 1 7.5866 -4.3329 0.1139
13 1 7.6432 -3.9272 2.5037
14 1 5.7758 -5.1223 1.5205
15 6 3.5714 -0.6886 1.2642
16 6 2.0399 -0.7208 1.2501
17 1 1.6573 -0.2212 2.1401
18 7 1.5801 -2.1117 1.2342
19 6 1.4548 -2.7932 2.3902
20 8 1.7227 -2.2536 3.4461
21 6 0.9917 -4.1959 2.3742
22 6 0.8604 -4.9041 3.5706
23 6 0.4275 -6.2126 3.5514
24 6 0.1216 -6.8270 2.3470
25 9 -0.3027 -8.1096 2.3342
26 6 0.2503 -6.1288 1.1539
27 9 -0.0436 -6.7346 -0.0173
28 6 0.6834 -4.8179 1.1627
29 1 -0.3633 0.5144 0.8898
30 1 -0.3634 0.5133 -0.8902
31 1 -0.3633 -1.0276 0.0005
32 1 1.6572 -0.2206 -2.1399
33 1 1.6978 -1.7556 -1.2389
34 1 3.9142 0.3410 -1.3674
35 1 3.9437 -1.2829 -2.0987
36 1 6.6846 -1.5120 2.6265
37 1 3.9143 0.3410 1.3672
38 1 3.9418 -1.2845 2.0984
39 1 1.3661 -2.5421 0.3918
40 1 1.0978 -4.4270 4.5101
41 1 0.3263 -6.7604 4.4765
42 1 0.7838 -4.2750 0.2345
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000966723093.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:41:20
Heat of formation + Delta-G solvation = -80.030547 kcal
Electronic energy + Delta-G solvation = -28489.177623 eV
Core-core repulsion = 24298.673467 eV
Total energy + Delta-G solvation = -4190.504156 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-49.62487 -48.69428 -40.16665 -38.61104 -37.25033 -34.22478 -33.06546 -31.36958
-30.97917 -30.62075 -29.01853 -27.34627 -24.43849 -23.92580 -23.27236 -22.15986
-21.14647 -20.70259 -18.82643 -18.51557 -17.59156 -17.22705 -16.67425 -16.46318
-16.37353 -15.14880 -15.10681 -14.98988 -14.63691 -14.53993 -14.33507 -14.06858
-13.83795 -13.66965 -13.35464 -13.17259 -13.07205 -12.66900 -12.49700 -12.08173
-11.98422 -11.63716 -11.60812 -11.41235 -11.13948 -10.94138 -10.73759 -10.56011
-10.27394 -9.96988 -9.78404 -9.60615 -9.50124 -9.32710 -8.90409 -8.48812
-8.44737 -6.67654 -5.79415 -3.22767 0.44154 0.81619 2.75103 3.36943
3.43838 3.44217 3.44328 3.57162 3.76899 4.12661 4.33149 4.48271
4.62277 4.82824 5.00690 5.13885 5.18800 5.29526 5.38621 5.47112
5.50468 5.53095 5.61471 5.82233 5.83945 5.87864 5.94444 6.04492
6.10286 6.23455 6.30917 6.39383 6.47982 6.49867 6.59017 6.70936
6.82290 6.92691 7.30573 7.62673 7.77922 7.94672 8.44150 8.60169
9.19169 9.83025 10.38693 11.28482
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.010275 B = 0.005313 C = 0.004308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2724.410127 B = 5268.705416 C = 6498.374882
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.094 4.094
3 H 0.079 0.921
4 C -0.129 4.129
5 C 0.141 3.859
6 N -0.587 5.587
7 C -0.256 4.256
8 H 0.063 0.937
9 C 0.008 3.992
10 N -0.897 5.897
11 Si 0.896 3.104
12 H -0.283 1.283
13 H -0.290 1.290
14 H -0.284 1.284
15 C 0.160 3.840
16 C 0.125 3.875
17 H 0.079 0.921
18 N -0.689 5.689
19 C 0.557 3.443
20 O -0.535 6.535
21 C -0.100 4.100
22 C -0.044 4.044
23 C -0.133 4.133
24 C 0.082 3.918
25 F -0.128 7.128
26 C 0.062 3.938
27 F -0.127 7.127
28 C -0.092 4.092
29 H 0.051 0.949
30 H 0.050 0.950
31 H 0.050 0.950
32 H 0.055 0.945
33 H 0.052 0.948
34 H 0.018 0.982
35 H 0.054 0.946
36 H 0.255 0.745
37 H 0.027 0.973
38 H 0.098 0.902
39 H 0.394 0.606
40 H 0.155 0.845
41 H 0.152 0.848
42 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.407 -4.241 -0.952 15.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.114 4.114
3 H 0.098 0.902
4 C -0.169 4.169
5 C 0.015 3.985
6 N -0.310 5.310
7 C -0.385 4.385
8 H 0.081 0.919
9 C -0.191 4.191
10 N -0.541 5.541
11 Si 0.726 3.274
12 H -0.209 1.209
13 H -0.216 1.216
14 H -0.211 1.211
15 C 0.033 3.967
16 C 0.019 3.981
17 H 0.097 0.903
18 N -0.339 5.339
19 C 0.342 3.658
20 O -0.413 6.413
21 C -0.104 4.104
22 C -0.063 4.063
23 C -0.152 4.152
24 C 0.062 3.938
25 F -0.106 7.106
26 C 0.042 3.958
27 F -0.105 7.105
28 C -0.112 4.112
29 H 0.070 0.930
30 H 0.069 0.931
31 H 0.069 0.931
32 H 0.074 0.926
33 H 0.071 0.929
34 H 0.036 0.964
35 H 0.072 0.928
36 H 0.065 0.935
37 H 0.045 0.955
38 H 0.116 0.884
39 H 0.230 0.770
40 H 0.172 0.828
41 H 0.169 0.831
42 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -14.087 -3.879 -0.129 14.612
hybrid contribution 0.398 -1.479 -0.569 1.633
sum -13.688 -5.358 -0.698 14.716
Atomic orbital electron populations
1.21858 0.95940 1.01334 1.01100 1.21325 0.94625 1.00009 0.95395
0.90227 1.22085 0.99315 0.99278 0.96185 1.20940 0.90615 0.96626
0.90315 1.43974 1.48270 1.39599 0.99119 1.19029 1.09851 1.03009
1.06638 0.91925 1.25005 0.97087 0.97135 0.99866 1.69984 1.37212
1.28930 1.17955 0.86472 0.79455 0.84082 0.77392 1.20912 1.21567
1.21061 1.21210 0.86480 0.97930 0.91054 1.21878 0.99133 0.79924
0.97139 0.90301 1.45770 1.65940 1.14251 1.07933 1.17809 0.78387
0.84945 0.84631 1.90778 1.50637 1.69307 1.30624 1.20092 1.01574
0.95705 0.93002 1.21248 0.93734 0.92344 0.98960 1.21058 1.01671
0.95790 0.96667 1.17901 1.02266 0.79977 0.93667 1.91532 1.87296
1.34516 1.97262 1.17455 1.05490 0.92252 0.80621 1.91543 1.91156
1.83023 1.44821 1.21263 0.97734 0.92568 0.99617 0.92995 0.93057
0.93134 0.92649 0.92917 0.96369 0.92773 0.93498 0.95509 0.88431
0.76963 0.82758 0.83061 0.83318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.73 9.05 37.16 0.34 -1.39 16
2 C -0.09 -1.38 2.48 -90.58 -0.22 -1.61 16
3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
4 C -0.13 -1.92 5.19 -26.61 -0.14 -2.06 16
5 C 0.14 2.71 6.52 -3.71 -0.02 2.68 16
6 N -0.59 -13.68 2.91 -172.32 -0.50 -14.19 16
7 C -0.26 -6.73 9.58 -15.06 -0.14 -6.88 16
8 H 0.06 1.63 7.89 -52.48 -0.41 1.21 16
9 C 0.01 0.23 4.92 -17.43 -0.09 0.15 16
10 N -0.90 -25.97 11.20 55.49 0.62 -25.35 16
11 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16
12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
15 C 0.16 3.67 4.90 -3.71 -0.02 3.65 16
16 C 0.12 2.23 2.24 -67.81 -0.15 2.08 16
17 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16
18 N -0.69 -11.49 4.20 -54.67 -0.23 -11.72 16
19 C 0.56 9.84 7.74 -12.38 -0.10 9.75 16
20 O -0.54 -11.16 16.01 5.31 0.08 -11.08 16
21 C -0.10 -1.46 5.87 -104.97 -0.62 -2.08 16
22 C -0.04 -0.56 9.59 -39.20 -0.38 -0.94 16
23 C -0.13 -1.46 10.01 -39.59 -0.40 -1.85 16
24 C 0.08 1.02 7.31 -39.22 -0.29 0.73 16
25 F -0.13 -1.61 17.17 2.25 0.04 -1.57 16
26 C 0.06 0.81 7.30 -39.42 -0.29 0.52 16
27 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16
28 C -0.09 -1.21 9.51 -39.13 -0.37 -1.58 16
29 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16
30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16
32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16
34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
35 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16
36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.10 2.65 6.06 -51.93 -0.31 2.34 16
39 H 0.39 5.85 4.66 -40.82 -0.19 5.66 16
40 H 0.15 1.89 7.65 -52.48 -0.40 1.48 16
41 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16
42 H 0.15 1.72 6.40 -52.49 -0.34 1.39 16
LS Contribution 349.11 15.07 5.26 5.26
Total: -1.00 -30.52 349.11 -7.88 -38.39
By element:
Atomic # 1 Polarization: 9.23 SS G_CDS: -5.28 Total: 3.95 kcal
Atomic # 6 Polarization: 4.06 SS G_CDS: -2.88 Total: 1.17 kcal
Atomic # 7 Polarization: -51.15 SS G_CDS: -0.11 Total: -51.26 kcal
Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal
Atomic # 9 Polarization: -3.33 SS G_CDS: 0.08 Total: -3.26 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -30.52 -7.88 -38.39 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000966723093.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.636 kcal
(2) G-P(sol) polarization free energy of solvation -30.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds