Wall clock time and date at job start Tue Mar 31 2020 14:41:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.44779 * 2 1
4 4 C 1.53039 * 109.45705 * 240.03585 * 2 1 3
5 5 C 1.53193 * 109.31130 * 178.61190 * 4 2 1
6 6 N 1.46931 * 108.77599 * 54.63405 * 5 4 2
7 7 C 1.36935 * 120.62899 * 126.41199 * 6 5 4
8 8 H 1.08004 * 119.99852 * 331.80827 * 7 6 5
9 9 C 1.38809 * 119.99968 * 151.81091 * 7 6 5
10 10 N 1.31621 * 119.99961 * 343.08702 * 9 7 6
11 11 Si 1.86802 * 120.00263 * 163.08420 * 9 7 6
12 12 H 1.48501 * 109.46771 * 60.00088 * 11 9 7
13 13 H 1.48493 * 109.47122 * 179.97438 * 11 9 7
14 14 H 1.48502 * 109.47263 * 300.00466 * 11 9 7
15 15 C 1.46922 * 118.73834 * 306.39420 * 6 5 4
16 16 C 1.53043 * 109.46186 * 119.96690 * 2 1 3
17 17 H 1.08997 * 109.52123 * 301.35411 * 16 2 1
18 18 N 1.46501 * 109.49347 * 61.43287 * 16 2 1
19 19 C 1.34775 * 119.99616 * 204.83710 * 18 16 2
20 20 O 1.21568 * 120.00363 * 0.02562 * 19 18 16
21 21 C 1.47731 * 120.00055 * 180.02562 * 19 18 16
22 22 C 1.39650 * 120.11187 * 180.02562 * 21 19 18
23 23 C 1.37844 * 119.92747 * 179.97438 * 22 21 19
24 24 C 1.38615 * 120.14799 * 359.97438 * 23 22 21
25 25 F 1.35099 * 119.89006 * 180.02562 * 24 23 22
26 26 C 1.38842 * 120.21622 * 0.04158 * 24 23 22
27 27 F 1.35099 * 119.95731 * 179.70650 * 26 24 23
28 28 C 1.38058 * 120.07375 * 359.97438 * 26 24 23
29 29 H 1.09007 * 109.47056 * 300.03123 * 1 2 3
30 30 H 1.08997 * 109.47510 * 60.03148 * 1 2 3
31 31 H 1.08995 * 109.47079 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.49951 * 58.66798 * 4 2 1
33 33 H 1.08997 * 109.52443 * 298.57741 * 4 2 1
34 34 H 1.08999 * 109.58744 * 294.85199 * 5 4 2
35 35 H 1.08996 * 109.70533 * 174.49247 * 5 4 2
36 36 H 0.97001 * 119.99765 * 179.97438 * 10 9 7
37 37 H 1.08999 * 109.58582 * 293.82176 * 15 6 5
38 38 H 1.09004 * 109.58904 * 173.39350 * 15 6 5
39 39 H 0.96994 * 120.00419 * 24.84265 * 18 16 2
40 40 H 1.08005 * 120.03634 * 359.97438 * 22 21 19
41 41 H 1.07994 * 119.93263 * 179.97438 * 23 22 21
42 42 H 1.07997 * 120.06858 * 179.97438 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8929 1.0278 0.0000
4 6 2.0398 -0.7207 -1.2501
5 6 3.5713 -0.6885 -1.2644
6 7 4.0679 -1.2488 -0.0001
7 6 4.9765 -2.2733 -0.0002
8 1 5.0042 -2.9704 -0.8247
9 6 5.8617 -2.4159 1.0594
10 7 6.0662 -1.4122 1.8859
11 14 6.7629 -4.0325 1.3125
12 1 7.5866 -4.3329 0.1139
13 1 7.6432 -3.9272 2.5037
14 1 5.7758 -5.1223 1.5205
15 6 3.5714 -0.6886 1.2642
16 6 2.0399 -0.7208 1.2501
17 1 1.6573 -0.2212 2.1401
18 7 1.5801 -2.1117 1.2342
19 6 1.4548 -2.7932 2.3902
20 8 1.7227 -2.2536 3.4461
21 6 0.9917 -4.1959 2.3742
22 6 0.8604 -4.9041 3.5706
23 6 0.4275 -6.2126 3.5514
24 6 0.1216 -6.8270 2.3470
25 9 -0.3027 -8.1096 2.3342
26 6 0.2503 -6.1288 1.1539
27 9 -0.0436 -6.7346 -0.0173
28 6 0.6834 -4.8179 1.1627
29 1 -0.3633 0.5144 0.8898
30 1 -0.3634 0.5133 -0.8902
31 1 -0.3633 -1.0276 0.0005
32 1 1.6572 -0.2206 -2.1399
33 1 1.6978 -1.7556 -1.2389
34 1 3.9142 0.3410 -1.3674
35 1 3.9437 -1.2829 -2.0987
36 1 6.6846 -1.5120 2.6265
37 1 3.9143 0.3410 1.3672
38 1 3.9418 -1.2845 2.0984
39 1 1.3661 -2.5421 0.3918
40 1 1.0978 -4.4270 4.5101
41 1 0.3263 -6.7604 4.4765
42 1 0.7838 -4.2750 0.2345
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000966723093.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:41:19
Heat of formation + Delta-G solvation = -97.282757 kcal
Electronic energy + Delta-G solvation = -28489.925735 eV
Core-core repulsion = 24298.673467 eV
Total energy + Delta-G solvation = -4191.252268 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-50.63174 -49.70546 -41.48358 -39.85518 -38.63190 -35.95059 -34.49439 -32.90052
-32.34214 -31.68737 -30.47793 -28.89172 -25.98979 -25.26027 -24.35710 -23.56435
-22.73500 -21.92887 -20.33679 -19.64798 -18.77017 -18.57421 -18.11841 -17.53915
-17.47027 -16.87984 -16.51467 -16.11665 -15.92867 -15.75983 -15.64365 -15.54032
-15.16525 -14.92381 -14.78330 -14.63273 -14.25503 -14.03666 -13.67009 -13.51877
-13.18670 -13.08837 -13.01181 -12.70809 -12.59714 -12.54286 -12.47312 -12.25941
-11.94104 -11.55484 -11.32387 -11.06082 -11.01970 -10.52777 -10.31553 -10.06919
-9.83837 -8.62702 -7.85497 -5.30177 -0.62213 -0.16053 1.41217 1.43987
1.49273 1.59069 2.16571 2.48853 2.53784 2.57510 3.11186 3.30093
3.36721 3.53807 3.70333 3.81817 3.89387 3.99359 4.00947 4.14223
4.42986 4.50914 4.53229 4.67822 4.69232 4.72555 4.81280 4.85819
4.92407 4.97298 5.06104 5.10683 5.18979 5.26008 5.28141 5.47978
5.50600 5.52223 5.61072 5.70863 5.73797 6.40563 6.58799 7.16073
7.24761 7.89181 8.39674 9.19225
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.010275 B = 0.005313 C = 0.004308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2724.410127 B = 5268.705416 C = 6498.374882
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.088 4.088
3 H 0.078 0.922
4 C -0.117 4.117
5 C 0.135 3.865
6 N -0.600 5.600
7 C -0.250 4.250
8 H 0.068 0.932
9 C -0.048 4.048
10 N -0.932 5.932
11 Si 0.950 3.050
12 H -0.273 1.273
13 H -0.300 1.300
14 H -0.281 1.281
15 C 0.170 3.830
16 C 0.136 3.864
17 H 0.070 0.930
18 N -0.682 5.682
19 C 0.552 3.448
20 O -0.576 6.576
21 C -0.120 4.120
22 C -0.045 4.045
23 C -0.116 4.116
24 C 0.085 3.915
25 F -0.127 7.127
26 C 0.055 3.945
27 F -0.130 7.130
28 C -0.086 4.086
29 H 0.051 0.949
30 H 0.075 0.925
31 H 0.056 0.944
32 H 0.091 0.909
33 H 0.061 0.939
34 H 0.013 0.987
35 H 0.056 0.944
36 H 0.245 0.755
37 H -0.001 1.001
38 H 0.051 0.949
39 H 0.405 0.595
40 H 0.156 0.844
41 H 0.186 0.814
42 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.570 -5.553 -2.425 17.643
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.107 4.107
3 H 0.096 0.904
4 C -0.156 4.156
5 C 0.010 3.990
6 N -0.323 5.323
7 C -0.380 4.380
8 H 0.086 0.914
9 C -0.243 4.243
10 N -0.579 5.579
11 Si 0.779 3.221
12 H -0.199 1.199
13 H -0.226 1.226
14 H -0.207 1.207
15 C 0.043 3.957
16 C 0.030 3.970
17 H 0.088 0.912
18 N -0.332 5.332
19 C 0.340 3.660
20 O -0.458 6.458
21 C -0.123 4.123
22 C -0.064 4.064
23 C -0.134 4.134
24 C 0.064 3.936
25 F -0.106 7.106
26 C 0.034 3.966
27 F -0.109 7.109
28 C -0.105 4.105
29 H 0.071 0.929
30 H 0.094 0.906
31 H 0.075 0.925
32 H 0.109 0.891
33 H 0.080 0.920
34 H 0.031 0.969
35 H 0.074 0.926
36 H 0.055 0.945
37 H 0.017 0.983
38 H 0.069 0.931
39 H 0.243 0.757
40 H 0.174 0.826
41 H 0.203 0.797
42 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -16.285 -5.207 -1.666 17.178
hybrid contribution 1.070 -1.070 -0.142 1.520
sum -15.215 -6.277 -1.808 16.558
Atomic orbital electron populations
1.21774 0.92994 1.02187 1.02381 1.21284 0.96901 0.99247 0.93263
0.90361 1.21969 0.95577 1.00411 0.97632 1.21153 0.93722 0.95923
0.88219 1.44169 1.48076 1.39428 1.00649 1.19364 1.09187 1.03418
1.06052 0.91406 1.25670 0.98663 0.99598 1.00387 1.70153 1.38417
1.30691 1.18600 0.85595 0.78400 0.81044 0.77040 1.19850 1.22638
1.20713 1.20899 0.89976 0.95181 0.89653 1.21557 0.95312 0.81213
0.98950 0.91176 1.45671 1.65367 1.13784 1.08377 1.18323 0.77510
0.86079 0.84137 1.90752 1.52488 1.70510 1.32006 1.19903 1.03673
0.94256 0.94478 1.21372 0.93498 0.93038 0.98495 1.21301 0.99728
0.94847 0.97545 1.18054 1.01734 0.79920 0.93883 1.91539 1.87227
1.34515 1.97270 1.17512 1.05937 0.92310 0.80803 1.91536 1.91237
1.83022 1.45065 1.21269 0.97127 0.92651 0.99490 0.92945 0.90617
0.92490 0.89078 0.92017 0.96911 0.92568 0.94541 0.98338 0.93083
0.75693 0.82608 0.79687 0.82062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.78 9.05 71.98 0.65 -2.12 16
2 C -0.09 -2.39 2.48 -10.77 -0.03 -2.42 16
3 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
4 C -0.12 -3.12 5.19 30.67 0.16 -2.96 16
5 C 0.13 4.99 6.52 86.36 0.56 5.55 16
6 N -0.60 -28.23 2.91 -699.10 -2.03 -30.27 16
7 C -0.25 -13.25 9.58 84.03 0.81 -12.44 16
8 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16
9 C -0.05 -2.67 4.92 84.86 0.42 -2.26 16
10 N -0.93 -56.42 11.20 21.65 0.24 -56.18 16
11 Si 0.95 45.66 29.59 68.60 2.03 47.69 16
12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16
13 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16
14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
15 C 0.17 8.11 4.90 86.36 0.42 8.53 16
16 C 0.14 4.87 2.24 45.07 0.10 4.97 16
17 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16
18 N -0.68 -22.37 4.20 -445.14 -1.87 -24.24 16
19 C 0.55 19.63 7.74 86.75 0.67 20.30 16
20 O -0.58 -24.87 16.01 -3.93 -0.06 -24.94 16
21 C -0.12 -3.39 5.87 -20.09 -0.12 -3.50 16
22 C -0.04 -1.09 9.59 22.52 0.22 -0.87 16
23 C -0.12 -2.23 10.01 22.27 0.22 -2.00 16
24 C 0.08 1.88 7.31 22.50 0.16 2.05 16
25 F -0.13 -2.88 17.17 44.97 0.77 -2.11 16
26 C 0.05 1.31 7.30 22.37 0.16 1.47 16
27 F -0.13 -3.25 17.18 44.97 0.77 -2.48 16
28 C -0.09 -2.09 9.51 22.56 0.21 -1.88 16
29 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16
30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
31 H 0.06 1.10 7.54 -2.39 -0.02 1.09 16
32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
33 H 0.06 1.56 6.40 -2.39 -0.02 1.55 16
34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16
35 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16
36 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16
37 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16
38 H 0.05 2.93 6.06 -2.38 -0.01 2.91 16
39 H 0.40 11.30 4.66 -92.71 -0.43 10.87 16
40 H 0.16 3.71 7.65 -2.91 -0.02 3.69 16
41 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16
42 H 0.16 3.38 6.40 -2.91 -0.02 3.36 16
Total: -1.00 -69.12 349.11 5.10 -64.02
By element:
Atomic # 1 Polarization: 15.46 SS G_CDS: 0.63 Total: 16.09 kcal
Atomic # 6 Polarization: 7.78 SS G_CDS: 4.63 Total: 12.41 kcal
Atomic # 7 Polarization: -107.02 SS G_CDS: -3.66 Total: -110.68 kcal
Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.94 kcal
Atomic # 9 Polarization: -6.13 SS G_CDS: 1.54 Total: -4.59 kcal
Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal
Total: -69.12 5.10 -64.02 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000966723093.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.265 kcal
(2) G-P(sol) polarization free energy of solvation -69.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.387 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds