Wall clock time and date at job start Tue Mar 31 2020 14:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.45105 * 2 1 4 4 C 1.53041 * 109.46409 * 240.02603 * 2 1 3 5 5 C 1.53188 * 109.31449 * 178.61222 * 4 2 1 6 6 N 1.46925 * 108.77357 * 54.63889 * 5 4 2 7 7 C 1.36940 * 120.63014 * 126.36407 * 6 5 4 8 8 H 1.07991 * 120.00519 * 332.62884 * 7 6 5 9 9 C 1.38821 * 119.99892 * 152.62074 * 7 6 5 10 10 N 1.31613 * 119.99769 * 159.36790 * 9 7 6 11 11 Si 1.86796 * 120.00022 * 339.37683 * 9 7 6 12 12 H 1.48498 * 109.47296 * 92.80520 * 11 9 7 13 13 H 1.48497 * 109.47148 * 212.80892 * 11 9 7 14 14 H 1.48503 * 109.47291 * 332.80676 * 11 9 7 15 15 C 1.46925 * 118.74182 * 306.39170 * 6 5 4 16 16 C 1.53051 * 109.45889 * 119.96077 * 2 1 3 17 17 H 1.09002 * 109.49537 * 301.37165 * 16 2 1 18 18 N 1.46502 * 109.49181 * 61.43519 * 16 2 1 19 19 C 1.34783 * 119.99546 * 204.72320 * 18 16 2 20 20 O 1.21569 * 119.99973 * 0.02562 * 19 18 16 21 21 C 1.47693 * 119.99791 * 180.02562 * 19 18 16 22 22 C 1.39656 * 120.15756 * 359.97438 * 21 19 18 23 23 C 1.38066 * 119.85367 * 180.02562 * 22 21 19 24 24 F 1.35099 * 119.91974 * 180.02562 * 23 22 21 25 25 C 1.38655 * 120.16251 * 359.97438 * 23 22 21 26 26 C 1.38185 * 120.31800 * 359.97438 * 25 23 22 27 27 C 1.38308 * 120.14361 * 359.77219 * 26 25 23 28 28 F 1.35104 * 120.08540 * 180.27669 * 27 26 25 29 29 H 1.08991 * 109.47748 * 300.03660 * 1 2 3 30 30 H 1.09001 * 109.46923 * 60.04453 * 1 2 3 31 31 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.50302 * 298.57034 * 4 2 1 33 33 H 1.09001 * 109.49038 * 58.66537 * 4 2 1 34 34 H 1.09000 * 109.59029 * 174.42217 * 5 4 2 35 35 H 1.08995 * 109.59101 * 294.71562 * 5 4 2 36 36 H 0.97000 * 119.99910 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.58625 * 293.82052 * 15 6 5 38 38 H 1.09004 * 109.58969 * 173.39563 * 15 6 5 39 39 H 0.96996 * 120.00814 * 25.00552 * 18 16 2 40 40 H 1.07997 * 120.07026 * 359.97438 * 22 21 19 41 41 H 1.08008 * 119.84038 * 180.02562 * 25 23 22 42 42 H 1.08000 * 119.92635 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0002 7 6 4.9757 -2.2740 0.0003 8 1 5.0117 -2.9635 -0.8300 9 6 5.8499 -2.4268 1.0678 10 7 6.4261 -3.5900 1.2851 11 14 6.2083 -0.9817 2.1958 12 1 5.2776 -1.0139 3.3525 13 1 7.6079 -1.0700 2.6840 14 1 6.0243 0.2878 1.4477 15 6 3.5713 -0.6885 1.2644 16 6 2.0398 -0.7207 1.2502 17 1 1.6566 -0.2209 2.1399 18 7 1.5800 -2.1116 1.2344 19 6 1.4567 -2.7937 2.3903 20 8 1.7266 -2.2547 3.4460 21 6 0.9938 -4.1961 2.3744 22 6 0.6823 -4.8184 1.1635 23 6 0.2496 -6.1295 1.1559 24 9 -0.0516 -6.7330 -0.0147 25 6 0.1243 -6.8287 2.3467 26 6 0.4316 -6.2201 3.5486 27 6 0.8712 -4.9089 3.5708 28 9 1.1767 -4.3168 4.7461 29 1 -0.3634 0.5143 0.8895 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 1.6979 -1.7557 -1.2382 33 1 1.6573 -0.2209 -2.1397 34 1 3.9418 -1.2847 -2.0982 35 1 3.9143 0.3406 -1.3697 36 1 7.0367 -3.6969 2.0313 37 1 3.9142 0.3411 1.3675 38 1 3.9416 -1.2844 2.0987 39 1 1.3682 -2.5429 0.3918 40 1 0.7790 -4.2750 0.2352 41 1 -0.2143 -7.8543 2.3347 42 1 0.3321 -6.7707 4.4724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966724520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:35 Heat of formation + Delta-G solvation = -72.248955 kcal Electronic energy + Delta-G solvation = -28860.959317 eV Core-core repulsion = 24670.792596 eV Total energy + Delta-G solvation = -4190.166721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.02394 -48.77954 -40.12534 -38.66857 -37.44597 -34.35248 -33.12845 -31.71298 -31.36273 -30.07570 -29.51089 -27.59723 -24.62539 -23.89214 -23.15215 -22.42383 -21.26028 -20.79834 -18.95425 -18.42495 -17.46874 -17.21909 -16.72030 -16.26045 -15.96553 -15.40306 -15.33661 -15.15320 -14.69299 -14.40019 -14.33572 -14.24190 -13.70816 -13.63769 -13.41390 -13.35745 -13.14798 -12.73392 -12.58133 -12.18454 -12.04025 -11.94126 -11.68985 -11.55966 -11.47525 -11.17671 -10.64470 -10.55650 -10.28895 -9.95117 -9.85199 -9.58466 -9.44802 -9.41254 -8.79031 -8.66059 -8.42896 -6.96209 -5.94163 -3.30112 0.52045 0.85067 2.81231 3.34631 3.42591 3.51859 3.53575 3.70594 3.98861 4.07818 4.38350 4.56191 4.56784 4.86818 4.92745 4.95082 4.99541 5.07786 5.16785 5.40009 5.42923 5.64644 5.68967 5.70914 5.73849 5.80355 5.84602 5.90295 5.93611 6.03958 6.08026 6.17149 6.28094 6.33840 6.46907 6.57597 6.58135 6.66955 6.77764 6.93885 7.83097 7.96108 8.32369 8.53526 8.93431 9.73234 10.09509 11.21348 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.005580 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.315895 B = 5017.069829 C = 5715.346277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.145 3.855 6 N -0.601 5.601 7 C -0.262 4.262 8 H 0.084 0.916 9 C 0.029 3.971 10 N -0.905 5.905 11 Si 0.875 3.125 12 H -0.283 1.283 13 H -0.303 1.303 14 H -0.271 1.271 15 C 0.112 3.888 16 C 0.135 3.865 17 H 0.083 0.917 18 N -0.690 5.690 19 C 0.558 3.442 20 O -0.528 6.528 21 C -0.131 4.131 22 C -0.088 4.088 23 C 0.082 3.918 24 F -0.133 7.133 25 C -0.104 4.104 26 C -0.137 4.137 27 C 0.149 3.851 28 F -0.110 7.110 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.397 0.603 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.531 -1.640 -1.428 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.170 4.170 5 C 0.019 3.981 6 N -0.325 5.325 7 C -0.390 4.390 8 H 0.102 0.898 9 C -0.171 4.171 10 N -0.547 5.547 11 Si 0.705 3.295 12 H -0.211 1.211 13 H -0.232 1.232 14 H -0.196 1.196 15 C -0.015 4.015 16 C 0.029 3.971 17 H 0.101 0.899 18 N -0.342 5.342 19 C 0.344 3.656 20 O -0.405 6.405 21 C -0.135 4.135 22 C -0.107 4.107 23 C 0.062 3.938 24 F -0.112 7.112 25 C -0.123 4.123 26 C -0.156 4.156 27 C 0.129 3.871 28 F -0.088 7.088 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.234 0.766 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.183 -1.324 -0.607 16.248 hybrid contribution 0.380 0.434 0.258 0.632 sum -15.803 -0.890 -0.348 15.832 Atomic orbital electron populations 1.21841 0.95448 1.01619 1.01287 1.21326 0.95129 0.99887 0.95015 0.90081 1.22090 0.98925 0.99733 0.96270 1.20955 0.90844 0.96752 0.89532 1.44298 1.48829 1.40292 0.99051 1.18817 1.09917 1.02818 1.07429 0.89801 1.25243 0.97266 0.96517 0.98055 1.69820 1.32464 1.21951 1.30506 0.87055 0.76449 0.84823 0.81191 1.21069 1.23160 1.19606 1.21801 0.91109 0.97629 0.90932 1.21559 0.96871 0.80777 0.97914 0.89893 1.45674 1.66577 1.13775 1.08137 1.17727 0.78379 0.84858 0.84630 1.90825 1.49960 1.69197 1.30516 1.20001 1.04940 0.96145 0.92411 1.21175 0.97563 0.93665 0.98310 1.17433 1.02991 0.91584 0.81770 1.91531 1.90920 1.83166 1.45567 1.21108 0.99912 1.00960 0.90315 1.20964 1.01902 0.93138 0.99572 1.17690 0.97251 0.91054 0.81147 1.91615 1.89647 1.83685 1.43852 0.92903 0.92791 0.92898 0.92454 0.92135 0.91798 0.95861 0.92812 0.94875 0.90021 0.76599 0.83488 0.83378 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.05 37.16 0.34 -1.30 16 2 C -0.09 -1.31 2.48 -90.57 -0.22 -1.53 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -1.84 5.20 -26.61 -0.14 -1.98 16 5 C 0.15 2.62 6.52 -3.71 -0.02 2.60 16 6 N -0.60 -13.62 2.69 -172.32 -0.46 -14.08 16 7 C -0.26 -7.14 10.04 -15.05 -0.15 -7.29 16 8 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 9 C 0.03 0.84 5.23 -17.43 -0.09 0.75 16 10 N -0.90 -28.03 13.97 55.49 0.78 -27.25 16 11 Si 0.87 23.22 24.35 -169.99 -4.14 19.08 16 12 H -0.28 -7.67 6.62 56.52 0.37 -7.29 16 13 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 14 H -0.27 -6.94 6.64 56.52 0.38 -6.57 16 15 C 0.11 2.47 3.80 -3.71 -0.01 2.45 16 16 C 0.13 2.37 2.24 -67.80 -0.15 2.22 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.69 -11.84 4.20 -54.67 -0.23 -12.07 16 19 C 0.56 10.67 7.73 -12.40 -0.10 10.58 16 20 O -0.53 -11.95 15.00 5.30 0.08 -11.88 16 21 C -0.13 -2.12 5.88 -104.92 -0.62 -2.73 16 22 C -0.09 -1.18 9.51 -39.12 -0.37 -1.56 16 23 C 0.08 0.99 7.29 -39.49 -0.29 0.71 16 24 F -0.13 -1.63 17.26 2.25 0.04 -1.59 16 25 C -0.10 -1.07 10.01 -39.45 -0.39 -1.46 16 26 C -0.14 -1.55 10.01 -39.57 -0.40 -1.94 16 27 C 0.15 2.30 7.28 -38.97 -0.28 2.01 16 28 F -0.11 -1.95 15.55 2.25 0.04 -1.91 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.59 7.54 -51.93 -0.39 0.19 16 32 H 0.06 0.80 6.40 -51.93 -0.33 0.47 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 37 H 0.03 0.73 7.08 -51.93 -0.37 0.36 16 38 H 0.08 2.12 4.49 -51.93 -0.23 1.89 16 39 H 0.40 6.01 4.67 -40.82 -0.19 5.81 16 40 H 0.15 1.77 6.40 -52.49 -0.34 1.43 16 41 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -33.61 340.95 -6.90 -40.51 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.23 Total: 2.54 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.91 Total: 1.52 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.08 Total: -53.40 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.07 Total: -3.51 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.14 Total: 19.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.61 -6.90 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966724520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.741 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds