Wall clock time and date at job start Tue Mar 31 2020 14:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.45105 * 2 1 4 4 C 1.53041 * 109.46409 * 240.02603 * 2 1 3 5 5 C 1.53188 * 109.31449 * 178.61222 * 4 2 1 6 6 N 1.46925 * 108.77357 * 54.63889 * 5 4 2 7 7 C 1.36940 * 120.63014 * 126.36407 * 6 5 4 8 8 H 1.07991 * 120.00519 * 332.62884 * 7 6 5 9 9 C 1.38821 * 119.99892 * 152.62074 * 7 6 5 10 10 N 1.31613 * 119.99769 * 159.36790 * 9 7 6 11 11 Si 1.86796 * 120.00022 * 339.37683 * 9 7 6 12 12 H 1.48498 * 109.47296 * 92.80520 * 11 9 7 13 13 H 1.48497 * 109.47148 * 212.80892 * 11 9 7 14 14 H 1.48503 * 109.47291 * 332.80676 * 11 9 7 15 15 C 1.46925 * 118.74182 * 306.39170 * 6 5 4 16 16 C 1.53051 * 109.45889 * 119.96077 * 2 1 3 17 17 H 1.09002 * 109.49537 * 301.37165 * 16 2 1 18 18 N 1.46502 * 109.49181 * 61.43519 * 16 2 1 19 19 C 1.34783 * 119.99546 * 204.72320 * 18 16 2 20 20 O 1.21569 * 119.99973 * 0.02562 * 19 18 16 21 21 C 1.47693 * 119.99791 * 180.02562 * 19 18 16 22 22 C 1.39656 * 120.15756 * 359.97438 * 21 19 18 23 23 C 1.38066 * 119.85367 * 180.02562 * 22 21 19 24 24 F 1.35099 * 119.91974 * 180.02562 * 23 22 21 25 25 C 1.38655 * 120.16251 * 359.97438 * 23 22 21 26 26 C 1.38185 * 120.31800 * 359.97438 * 25 23 22 27 27 C 1.38308 * 120.14361 * 359.77219 * 26 25 23 28 28 F 1.35104 * 120.08540 * 180.27669 * 27 26 25 29 29 H 1.08991 * 109.47748 * 300.03660 * 1 2 3 30 30 H 1.09001 * 109.46923 * 60.04453 * 1 2 3 31 31 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.50302 * 298.57034 * 4 2 1 33 33 H 1.09001 * 109.49038 * 58.66537 * 4 2 1 34 34 H 1.09000 * 109.59029 * 174.42217 * 5 4 2 35 35 H 1.08995 * 109.59101 * 294.71562 * 5 4 2 36 36 H 0.97000 * 119.99910 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.58625 * 293.82052 * 15 6 5 38 38 H 1.09004 * 109.58969 * 173.39563 * 15 6 5 39 39 H 0.96996 * 120.00814 * 25.00552 * 18 16 2 40 40 H 1.07997 * 120.07026 * 359.97438 * 22 21 19 41 41 H 1.08008 * 119.84038 * 180.02562 * 25 23 22 42 42 H 1.08000 * 119.92635 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0002 7 6 4.9757 -2.2740 0.0003 8 1 5.0117 -2.9635 -0.8300 9 6 5.8499 -2.4268 1.0678 10 7 6.4261 -3.5900 1.2851 11 14 6.2083 -0.9817 2.1958 12 1 5.2776 -1.0139 3.3525 13 1 7.6079 -1.0700 2.6840 14 1 6.0243 0.2878 1.4477 15 6 3.5713 -0.6885 1.2644 16 6 2.0398 -0.7207 1.2502 17 1 1.6566 -0.2209 2.1399 18 7 1.5800 -2.1116 1.2344 19 6 1.4567 -2.7937 2.3903 20 8 1.7266 -2.2547 3.4460 21 6 0.9938 -4.1961 2.3744 22 6 0.6823 -4.8184 1.1635 23 6 0.2496 -6.1295 1.1559 24 9 -0.0516 -6.7330 -0.0147 25 6 0.1243 -6.8287 2.3467 26 6 0.4316 -6.2201 3.5486 27 6 0.8712 -4.9089 3.5708 28 9 1.1767 -4.3168 4.7461 29 1 -0.3634 0.5143 0.8895 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 1.6979 -1.7557 -1.2382 33 1 1.6573 -0.2209 -2.1397 34 1 3.9418 -1.2847 -2.0982 35 1 3.9143 0.3406 -1.3697 36 1 7.0367 -3.6969 2.0313 37 1 3.9142 0.3411 1.3675 38 1 3.9416 -1.2844 2.0987 39 1 1.3682 -2.5429 0.3918 40 1 0.7790 -4.2750 0.2352 41 1 -0.2143 -7.8543 2.3347 42 1 0.3321 -6.7707 4.4724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966724520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:34 Heat of formation + Delta-G solvation = -94.411246 kcal Electronic energy + Delta-G solvation = -28861.920346 eV Core-core repulsion = 24670.792596 eV Total energy + Delta-G solvation = -4191.127750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.01463 -49.99488 -41.51221 -39.87956 -38.83475 -36.08171 -34.56917 -33.35138 -32.80665 -31.13919 -30.89195 -29.11022 -25.96589 -25.47879 -24.43254 -23.61287 -22.84854 -22.04962 -20.46047 -19.59377 -18.87000 -18.51577 -18.18776 -17.51900 -17.21273 -17.07775 -16.61862 -16.43368 -16.02715 -15.96372 -15.58369 -15.41414 -15.14517 -15.01533 -14.96048 -14.76834 -14.38605 -14.18912 -13.81040 -13.68798 -13.64985 -13.18647 -13.00379 -12.90367 -12.59234 -12.55062 -12.42447 -12.21495 -11.84605 -11.70509 -11.39635 -11.15515 -11.07420 -10.78327 -10.47890 -10.09230 -9.71518 -8.89899 -8.20571 -5.48248 -0.56228 -0.15949 1.26424 1.29964 1.37430 1.60923 2.05144 2.37391 2.45063 2.97180 3.02407 3.02506 3.33477 3.39831 3.51234 3.74393 3.87101 3.91229 3.98537 4.00786 4.30880 4.39354 4.47595 4.61514 4.62813 4.66514 4.72030 4.79594 4.83944 4.86096 4.88548 4.92159 5.00492 5.11802 5.18275 5.20304 5.41273 5.45137 5.54630 5.59587 5.85952 6.10175 6.44926 6.90056 7.12371 7.61477 8.02579 8.98655 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.005580 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.315895 B = 5017.069829 C = 5715.346277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.092 0.908 4 C -0.120 4.120 5 C 0.137 3.863 6 N -0.611 5.611 7 C -0.229 4.229 8 H 0.063 0.937 9 C -0.029 4.029 10 N -0.951 5.951 11 Si 0.927 3.073 12 H -0.301 1.301 13 H -0.312 1.312 14 H -0.254 1.254 15 C 0.110 3.890 16 C 0.138 3.862 17 H 0.077 0.923 18 N -0.682 5.682 19 C 0.549 3.451 20 O -0.576 6.576 21 C -0.160 4.160 22 C -0.090 4.090 23 C 0.081 3.919 24 F -0.130 7.130 25 C -0.081 4.081 26 C -0.121 4.121 27 C 0.119 3.881 28 F -0.133 7.133 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.256 0.744 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.407 0.593 40 H 0.157 0.843 41 H 0.192 0.808 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.295 -1.752 -3.269 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.110 0.890 4 C -0.159 4.159 5 C 0.013 3.987 6 N -0.335 5.335 7 C -0.359 4.359 8 H 0.081 0.919 9 C -0.224 4.224 10 N -0.597 5.597 11 Si 0.758 3.242 12 H -0.230 1.230 13 H -0.241 1.241 14 H -0.178 1.178 15 C -0.017 4.017 16 C 0.032 3.968 17 H 0.095 0.905 18 N -0.333 5.333 19 C 0.337 3.663 20 O -0.457 6.457 21 C -0.164 4.164 22 C -0.109 4.109 23 C 0.062 3.938 24 F -0.109 7.109 25 C -0.100 4.100 26 C -0.140 4.140 27 C 0.098 3.902 28 F -0.112 7.112 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.246 0.754 40 H 0.174 0.826 41 H 0.209 0.791 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.992 -1.391 -2.518 19.208 hybrid contribution 1.154 0.402 0.731 1.424 sum -17.838 -0.989 -1.786 17.954 Atomic orbital electron populations 1.21774 0.92887 1.02158 1.02621 1.21322 0.97104 0.99625 0.92488 0.88994 1.22004 0.95456 1.00508 0.97945 1.21230 0.93712 0.96885 0.86875 1.44406 1.48219 1.39754 1.01129 1.18818 1.08956 1.02681 1.05475 0.91908 1.25741 0.98569 0.98023 1.00087 1.69924 1.34528 1.23554 1.31742 0.86206 0.75032 0.83460 0.79454 1.22982 1.24086 1.17829 1.21724 0.94296 0.96576 0.89078 1.21483 0.93613 0.81551 1.00172 0.90473 1.45636 1.65719 1.13690 1.08212 1.18307 0.77604 0.86102 0.84330 1.90783 1.52245 1.70543 1.32126 1.19888 1.07545 0.94991 0.94000 1.21227 0.97509 0.94592 0.97607 1.17546 1.02581 0.91133 0.82550 1.91546 1.90824 1.82928 1.45601 1.21585 0.97197 1.02395 0.88785 1.21331 0.99853 0.91246 1.01539 1.18217 0.98936 0.92788 0.80234 1.91550 1.90195 1.84400 1.45009 0.92922 0.90140 0.92804 0.92361 0.88185 0.92052 0.94562 0.93463 0.94534 0.94479 0.75398 0.82587 0.79064 0.79711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.05 71.98 0.65 -1.93 16 2 C -0.09 -2.13 2.48 -10.76 -0.03 -2.16 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.12 -2.93 5.20 30.67 0.16 -2.77 16 5 C 0.14 4.63 6.52 86.36 0.56 5.19 16 6 N -0.61 -27.39 2.69 -699.11 -1.88 -29.27 16 7 C -0.23 -12.72 10.04 84.04 0.84 -11.87 16 8 H 0.06 3.72 8.05 -2.92 -0.02 3.69 16 9 C -0.03 -1.76 5.23 84.87 0.44 -1.32 16 10 N -0.95 -61.31 13.97 21.65 0.30 -61.01 16 11 Si 0.93 50.12 24.35 68.60 1.67 51.79 16 12 H -0.30 -16.99 6.62 99.48 0.66 -16.33 16 13 H -0.31 -17.04 7.11 99.48 0.71 -16.33 16 14 H -0.25 -12.78 6.64 99.48 0.66 -12.12 16 15 C 0.11 4.85 3.80 86.36 0.33 5.18 16 16 C 0.14 4.78 2.24 45.07 0.10 4.88 16 17 H 0.08 2.78 7.58 -2.39 -0.02 2.76 16 18 N -0.68 -23.40 4.20 -445.15 -1.87 -25.27 16 19 C 0.55 21.78 7.73 86.74 0.67 22.45 16 20 O -0.58 -27.67 15.00 -3.93 -0.06 -27.72 16 21 C -0.16 -5.27 5.88 -20.06 -0.12 -5.39 16 22 C -0.09 -2.34 9.51 22.57 0.21 -2.13 16 23 C 0.08 1.77 7.29 22.33 0.16 1.94 16 24 F -0.13 -2.81 17.26 44.97 0.78 -2.03 16 25 C -0.08 -1.37 10.01 22.36 0.22 -1.15 16 26 C -0.12 -2.45 10.01 22.27 0.22 -2.23 16 27 C 0.12 3.68 7.28 22.67 0.17 3.84 16 28 F -0.13 -4.95 15.55 44.97 0.70 -4.25 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.01 7.54 -2.39 -0.02 1.00 16 32 H 0.06 1.43 6.40 -2.39 -0.02 1.42 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 37 H 0.04 1.58 7.08 -2.39 -0.02 1.57 16 38 H 0.04 1.99 4.49 -2.38 -0.01 1.98 16 39 H 0.41 11.96 4.67 -92.71 -0.43 11.52 16 40 H 0.16 3.59 6.40 -2.91 -0.02 3.57 16 41 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -78.73 340.95 4.78 -73.95 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.54 Total: 11.26 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 4.61 Total: 12.55 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.45 Total: -115.54 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.72 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.48 Total: -6.29 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 1.67 Total: 51.79 kcal Total: -78.73 4.78 -73.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966724520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.463 kcal (2) G-P(sol) polarization free energy of solvation -78.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds