Wall clock time and date at job start Tue Mar 31 2020 14:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.45513 * 2 1 4 4 C 1.53037 * 109.46301 * 240.02439 * 2 1 3 5 5 C 1.53190 * 109.31215 * 178.60999 * 4 2 1 6 6 N 1.46921 * 108.77283 * 54.63981 * 5 4 2 7 7 C 1.36940 * 120.63426 * 126.37100 * 6 5 4 8 8 H 1.08002 * 119.99272 * 331.82572 * 7 6 5 9 9 C 1.38812 * 120.00432 * 151.82772 * 7 6 5 10 10 N 1.31614 * 119.99595 * 343.08096 * 9 7 6 11 11 Si 1.86804 * 119.99961 * 163.08258 * 9 7 6 12 12 H 1.48501 * 109.46839 * 89.99979 * 11 9 7 13 13 H 1.48501 * 109.46738 * 209.99868 * 11 9 7 14 14 H 1.48497 * 109.47017 * 329.99891 * 11 9 7 15 15 C 1.46923 * 118.74010 * 306.38460 * 6 5 4 16 16 C 1.53037 * 109.46060 * 119.95343 * 2 1 3 17 17 H 1.09001 * 109.49934 * 301.33988 * 16 2 1 18 18 N 1.46494 * 109.49565 * 61.43922 * 16 2 1 19 19 C 1.34779 * 119.99798 * 205.00028 * 18 16 2 20 20 O 1.21554 * 120.00502 * 359.97438 * 19 18 16 21 21 C 1.47861 * 119.99849 * 180.02562 * 19 18 16 22 22 C 1.39540 * 120.12275 * 359.72030 * 21 19 18 23 23 C 1.38202 * 119.87750 * 179.79183 * 22 21 19 24 24 F 1.35107 * 119.93835 * 180.20838 * 23 22 21 25 25 C 1.38531 * 120.12288 * 0.48737 * 23 22 21 26 26 C 1.38529 * 120.24226 * 359.74689 * 25 23 22 27 27 F 1.35101 * 119.94053 * 180.02562 * 26 25 23 28 28 C 1.38207 * 120.12088 * 0.02562 * 26 25 23 29 29 H 1.09002 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47510 * 59.97888 * 1 2 3 31 31 H 1.09008 * 109.47561 * 299.97503 * 1 2 3 32 32 H 1.08996 * 109.49700 * 298.56467 * 4 2 1 33 33 H 1.09002 * 109.49525 * 58.62928 * 4 2 1 34 34 H 1.09001 * 109.58324 * 174.42132 * 5 4 2 35 35 H 1.08997 * 109.58878 * 294.70646 * 5 4 2 36 36 H 0.97003 * 119.99558 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.58975 * 173.40188 * 15 6 5 38 38 H 1.09008 * 109.58929 * 293.68357 * 15 6 5 39 39 H 0.96997 * 120.00336 * 24.99544 * 18 16 2 40 40 H 1.08003 * 120.06212 * 0.02562 * 22 21 19 41 41 H 1.07996 * 119.87721 * 179.76351 * 25 23 22 42 42 H 1.07999 * 120.06114 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5713 -0.6886 -1.2641 6 7 4.0678 -1.2487 0.0002 7 6 4.9758 -2.2737 0.0005 8 1 5.0031 -2.9710 -0.8239 9 6 5.8609 -2.4168 1.0602 10 7 6.0659 -1.4129 1.8863 11 14 6.7610 -4.0339 1.3136 12 1 8.0453 -4.0075 0.5685 13 1 7.0321 -4.2280 2.7607 14 1 5.9212 -5.1516 0.8130 15 6 3.5713 -0.6882 1.2644 16 6 2.0398 -0.7205 1.2502 17 1 1.6571 -0.2203 2.1399 18 7 1.5802 -2.1113 1.2346 19 6 1.4516 -2.7916 2.3910 20 8 1.7175 -2.2512 3.4469 21 6 0.9882 -4.1956 2.3752 22 6 0.6778 -4.8170 1.1650 23 6 0.2493 -6.1309 1.1558 24 9 -0.0476 -6.7351 -0.0157 25 6 0.1180 -6.8277 2.3458 26 6 0.4202 -6.2143 3.5505 27 9 0.2905 -6.8998 4.7075 28 6 0.8541 -4.9022 3.5711 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5141 -0.8897 31 1 -0.3634 0.5135 0.8902 32 1 1.6979 -1.7558 -1.2380 33 1 1.6567 -0.2214 -2.1397 34 1 3.9417 -1.2847 -2.0981 35 1 3.9142 0.3406 -1.3699 36 1 6.6848 -1.5127 2.6266 37 1 3.9417 -1.2840 2.0987 38 1 3.9163 0.3406 1.3686 39 1 1.3683 -2.5427 0.3921 40 1 0.7758 -4.2734 0.2369 41 1 -0.2208 -7.8531 2.3343 42 1 1.0890 -4.4248 4.5109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968624676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:36 Heat of formation + Delta-G solvation = -80.445259 kcal Electronic energy + Delta-G solvation = -28463.249417 eV Core-core repulsion = 24272.727277 eV Total energy + Delta-G solvation = -4190.522139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.17145 -49.14923 -40.16236 -38.57590 -37.26756 -34.22858 -33.05577 -31.44812 -31.01478 -30.48328 -29.07524 -27.36463 -24.68266 -23.96204 -22.96983 -22.20266 -21.15102 -20.75386 -18.82339 -18.62273 -17.33068 -16.77256 -16.60409 -16.29123 -16.16398 -15.82580 -15.46001 -15.05558 -14.98150 -14.53512 -14.37385 -14.02748 -13.84887 -13.66335 -13.34699 -13.07219 -12.83745 -12.64671 -12.18969 -12.04392 -11.99077 -11.91021 -11.62930 -11.43462 -11.14765 -10.94990 -10.73265 -10.56403 -10.26843 -9.97230 -9.79566 -9.62165 -9.51688 -9.27470 -8.96201 -8.49967 -8.46730 -6.67709 -5.79725 -3.22855 0.46630 0.78473 2.74539 3.31634 3.36305 3.44349 3.45142 3.70288 3.75200 4.14906 4.44774 4.48142 4.57885 4.87124 4.87978 5.12429 5.18344 5.28989 5.36781 5.41101 5.51455 5.55656 5.69237 5.78818 5.82218 5.87492 5.93772 5.97070 6.10067 6.22799 6.30482 6.38875 6.47744 6.50657 6.58296 6.70474 6.81593 6.92030 7.29794 7.62500 7.77897 7.92635 8.43877 8.57479 9.18918 9.82918 10.38480 11.28273 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.005424 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.875932 B = 5160.972394 C = 6346.909309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.063 0.937 9 C 0.008 3.992 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.280 1.280 15 C 0.159 3.841 16 C 0.125 3.875 17 H 0.079 0.921 18 N -0.687 5.687 19 C 0.556 3.444 20 O -0.532 6.532 21 C -0.060 4.060 22 C -0.130 4.130 23 C 0.125 3.875 24 F -0.129 7.129 25 C -0.176 4.176 26 C 0.123 3.877 27 F -0.129 7.129 28 C -0.108 4.108 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.395 0.605 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 -4.807 -2.334 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.205 1.205 15 C 0.033 3.967 16 C 0.019 3.981 17 H 0.097 0.903 18 N -0.337 5.337 19 C 0.341 3.659 20 O -0.410 6.410 21 C -0.064 4.064 22 C -0.150 4.150 23 C 0.106 3.894 24 F -0.107 7.107 25 C -0.196 4.196 26 C 0.104 3.896 27 F -0.107 7.107 28 C -0.128 4.128 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.046 0.954 39 H 0.231 0.769 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.407 -4.425 -1.460 15.142 hybrid contribution 0.464 -1.374 -0.295 1.480 sum -13.944 -5.799 -1.755 15.203 Atomic orbital electron populations 1.21859 0.95929 1.01343 1.01113 1.21325 0.94634 1.00019 0.95375 0.90202 1.22088 0.99322 0.99280 0.96176 1.20934 0.90618 0.96625 0.90309 1.43976 1.48304 1.39573 0.99107 1.19056 1.09861 1.02943 1.06608 0.91889 1.25008 0.97113 0.97144 0.99860 1.69989 1.37126 1.28939 1.17991 0.86423 0.79786 0.84050 0.77293 1.21373 1.21485 1.20534 1.21213 0.86457 0.97997 0.91077 1.21885 0.99144 0.79845 0.97202 0.90261 1.45757 1.65821 1.14258 1.07855 1.17800 0.78563 0.84862 0.84705 1.90785 1.50433 1.69151 1.30638 1.19775 0.99037 0.95301 0.92258 1.21385 1.00503 0.93744 0.99352 1.17056 1.00274 0.91042 0.81061 1.91551 1.90760 1.83220 1.45192 1.21134 1.05706 1.02297 0.90455 1.17088 1.00978 0.90211 0.81352 1.91546 1.93472 1.79196 1.46511 1.21320 0.98885 0.92313 1.00301 0.93124 0.93041 0.92993 0.92904 0.92636 0.92787 0.96361 0.93548 0.88436 0.95447 0.76852 0.83576 0.83166 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.05 37.15 0.34 -1.39 16 2 C -0.09 -1.38 2.48 -90.59 -0.22 -1.60 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.13 -1.91 5.20 -26.61 -0.14 -2.05 16 5 C 0.14 2.70 6.52 -3.71 -0.02 2.67 16 6 N -0.59 -13.67 2.91 -172.32 -0.50 -14.17 16 7 C -0.26 -6.71 9.58 -15.06 -0.14 -6.85 16 8 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 9 C 0.01 0.22 4.92 -17.43 -0.09 0.14 16 10 N -0.90 -26.03 11.20 55.49 0.62 -25.41 16 11 Si 0.89 21.86 29.59 -169.99 -5.03 16.83 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.16 3.66 4.91 -3.71 -0.02 3.64 16 16 C 0.12 2.23 2.24 -67.81 -0.15 2.08 16 17 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 18 N -0.69 -11.47 4.20 -54.63 -0.23 -11.70 16 19 C 0.56 9.95 7.74 -12.32 -0.10 9.85 16 20 O -0.53 -11.30 16.01 5.32 0.09 -11.22 16 21 C -0.06 -0.90 5.87 -104.98 -0.62 -1.51 16 22 C -0.13 -1.66 9.52 -39.11 -0.37 -2.04 16 23 C 0.13 1.49 7.29 -39.49 -0.29 1.21 16 24 F -0.13 -1.53 17.26 2.25 0.04 -1.49 16 25 C -0.18 -1.96 10.00 -39.37 -0.39 -2.35 16 26 C 0.12 1.53 7.29 -39.49 -0.29 1.24 16 27 F -0.13 -1.59 17.26 2.25 0.04 -1.55 16 28 C -0.11 -1.52 9.57 -39.10 -0.37 -1.89 16 29 H 0.05 0.58 7.55 -51.93 -0.39 0.19 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.10 2.66 6.06 -51.93 -0.31 2.35 16 38 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.40 5.84 4.67 -40.82 -0.19 5.65 16 40 H 0.15 1.65 6.40 -52.48 -0.34 1.32 16 41 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.16 2.21 7.65 -52.49 -0.40 1.81 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -30.16 349.26 -7.87 -38.04 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.28 Total: 4.27 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.88 Total: 1.14 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.11 Total: -51.28 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.16 -7.87 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968624676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.409 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds