Wall clock time and date at job start Tue Mar 31 2020 14:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.45513 * 2 1 4 4 C 1.53037 * 109.46301 * 240.02439 * 2 1 3 5 5 C 1.53190 * 109.31215 * 178.60999 * 4 2 1 6 6 N 1.46921 * 108.77283 * 54.63981 * 5 4 2 7 7 C 1.36940 * 120.63426 * 126.37100 * 6 5 4 8 8 H 1.08002 * 119.99272 * 331.82572 * 7 6 5 9 9 C 1.38812 * 120.00432 * 151.82772 * 7 6 5 10 10 N 1.31614 * 119.99595 * 343.08096 * 9 7 6 11 11 Si 1.86804 * 119.99961 * 163.08258 * 9 7 6 12 12 H 1.48501 * 109.46839 * 89.99979 * 11 9 7 13 13 H 1.48501 * 109.46738 * 209.99868 * 11 9 7 14 14 H 1.48497 * 109.47017 * 329.99891 * 11 9 7 15 15 C 1.46923 * 118.74010 * 306.38460 * 6 5 4 16 16 C 1.53037 * 109.46060 * 119.95343 * 2 1 3 17 17 H 1.09001 * 109.49934 * 301.33988 * 16 2 1 18 18 N 1.46494 * 109.49565 * 61.43922 * 16 2 1 19 19 C 1.34779 * 119.99798 * 205.00028 * 18 16 2 20 20 O 1.21554 * 120.00502 * 359.97438 * 19 18 16 21 21 C 1.47861 * 119.99849 * 180.02562 * 19 18 16 22 22 C 1.39540 * 120.12275 * 359.72030 * 21 19 18 23 23 C 1.38202 * 119.87750 * 179.79183 * 22 21 19 24 24 F 1.35107 * 119.93835 * 180.20838 * 23 22 21 25 25 C 1.38531 * 120.12288 * 0.48737 * 23 22 21 26 26 C 1.38529 * 120.24226 * 359.74689 * 25 23 22 27 27 F 1.35101 * 119.94053 * 180.02562 * 26 25 23 28 28 C 1.38207 * 120.12088 * 0.02562 * 26 25 23 29 29 H 1.09002 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47510 * 59.97888 * 1 2 3 31 31 H 1.09008 * 109.47561 * 299.97503 * 1 2 3 32 32 H 1.08996 * 109.49700 * 298.56467 * 4 2 1 33 33 H 1.09002 * 109.49525 * 58.62928 * 4 2 1 34 34 H 1.09001 * 109.58324 * 174.42132 * 5 4 2 35 35 H 1.08997 * 109.58878 * 294.70646 * 5 4 2 36 36 H 0.97003 * 119.99558 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.58975 * 173.40188 * 15 6 5 38 38 H 1.09008 * 109.58929 * 293.68357 * 15 6 5 39 39 H 0.96997 * 120.00336 * 24.99544 * 18 16 2 40 40 H 1.08003 * 120.06212 * 0.02562 * 22 21 19 41 41 H 1.07996 * 119.87721 * 179.76351 * 25 23 22 42 42 H 1.07999 * 120.06114 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5713 -0.6886 -1.2641 6 7 4.0678 -1.2487 0.0002 7 6 4.9758 -2.2737 0.0005 8 1 5.0031 -2.9710 -0.8239 9 6 5.8609 -2.4168 1.0602 10 7 6.0659 -1.4129 1.8863 11 14 6.7610 -4.0339 1.3136 12 1 8.0453 -4.0075 0.5685 13 1 7.0321 -4.2280 2.7607 14 1 5.9212 -5.1516 0.8130 15 6 3.5713 -0.6882 1.2644 16 6 2.0398 -0.7205 1.2502 17 1 1.6571 -0.2203 2.1399 18 7 1.5802 -2.1113 1.2346 19 6 1.4516 -2.7916 2.3910 20 8 1.7175 -2.2512 3.4469 21 6 0.9882 -4.1956 2.3752 22 6 0.6778 -4.8170 1.1650 23 6 0.2493 -6.1309 1.1558 24 9 -0.0476 -6.7351 -0.0157 25 6 0.1180 -6.8277 2.3458 26 6 0.4202 -6.2143 3.5505 27 9 0.2905 -6.8998 4.7075 28 6 0.8541 -4.9022 3.5711 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5141 -0.8897 31 1 -0.3634 0.5135 0.8902 32 1 1.6979 -1.7558 -1.2380 33 1 1.6567 -0.2214 -2.1397 34 1 3.9417 -1.2847 -2.0981 35 1 3.9142 0.3406 -1.3699 36 1 6.6848 -1.5127 2.6266 37 1 3.9417 -1.2840 2.0987 38 1 3.9163 0.3406 1.3686 39 1 1.3683 -2.5427 0.3921 40 1 0.7758 -4.2734 0.2369 41 1 -0.2208 -7.8531 2.3343 42 1 1.0890 -4.4248 4.5109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968624676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:35 Heat of formation + Delta-G solvation = -97.468962 kcal Electronic energy + Delta-G solvation = -28463.987620 eV Core-core repulsion = 24272.727277 eV Total energy + Delta-G solvation = -4191.260343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.13914 -50.09755 -41.50370 -39.82685 -38.65197 -35.96102 -34.50216 -32.91050 -32.45104 -31.53909 -30.54399 -28.90425 -26.12185 -25.43970 -24.05285 -23.59937 -22.74106 -21.98583 -20.34538 -19.77269 -18.71988 -18.23339 -17.69363 -17.42188 -17.14164 -16.97444 -16.77126 -16.41505 -16.38662 -15.93687 -15.69136 -15.52259 -15.29840 -14.92612 -14.79802 -14.64256 -14.10366 -13.87993 -13.59693 -13.20832 -13.11897 -13.04061 -12.98483 -12.95011 -12.71952 -12.59374 -12.47249 -12.24718 -11.94735 -11.55077 -11.33664 -11.08131 -11.05270 -10.53656 -10.33953 -9.96782 -9.96598 -8.63161 -7.86183 -5.30496 -0.58981 -0.22167 1.39752 1.43125 1.49975 1.57535 2.05573 2.47716 2.49746 2.69809 3.13148 3.30067 3.41870 3.58556 3.69860 3.82760 3.85388 3.90086 4.00605 4.14117 4.29868 4.52784 4.56118 4.68225 4.70692 4.72520 4.77792 4.84932 4.90060 4.93782 4.97957 5.10502 5.19598 5.26274 5.27991 5.48211 5.51129 5.52678 5.60809 5.69217 5.73196 6.40062 6.55514 7.15479 7.20999 7.88915 8.39374 9.18784 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.005424 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.875932 B = 5160.972394 C = 6346.909309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.050 4.050 10 N -0.933 5.933 11 Si 0.948 3.052 12 H -0.283 1.283 13 H -0.303 1.303 14 H -0.267 1.267 15 C 0.169 3.831 16 C 0.136 3.864 17 H 0.069 0.931 18 N -0.677 5.677 19 C 0.551 3.449 20 O -0.577 6.577 21 C -0.080 4.080 22 C -0.122 4.122 23 C 0.128 3.872 24 F -0.123 7.123 25 C -0.155 4.155 26 C 0.123 3.877 27 F -0.128 7.128 28 C -0.117 4.117 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.013 0.987 36 H 0.244 0.756 37 H 0.049 0.951 38 H -0.001 1.001 39 H 0.407 0.593 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.154 -6.530 -4.828 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.088 0.912 9 C -0.245 4.245 10 N -0.580 5.580 11 Si 0.778 3.222 12 H -0.210 1.210 13 H -0.230 1.230 14 H -0.191 1.191 15 C 0.042 3.958 16 C 0.029 3.971 17 H 0.087 0.913 18 N -0.328 5.328 19 C 0.338 3.662 20 O -0.458 6.458 21 C -0.083 4.083 22 C -0.141 4.141 23 C 0.109 3.891 24 F -0.102 7.102 25 C -0.174 4.174 26 C 0.104 3.896 27 F -0.107 7.107 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.017 0.983 39 H 0.245 0.755 40 H 0.179 0.821 41 H 0.199 0.801 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.870 -6.164 -4.022 18.405 hybrid contribution 1.212 -0.839 0.439 1.538 sum -15.657 -7.003 -3.583 17.522 Atomic orbital electron populations 1.21777 0.92960 1.02253 1.02373 1.21284 0.96927 0.99242 0.93220 0.90366 1.21973 0.95547 1.00478 0.97567 1.21155 0.93754 0.95945 0.88177 1.44173 1.48091 1.39408 1.00627 1.19407 1.09046 1.03339 1.05962 0.91171 1.25682 0.98768 0.99600 1.00451 1.70159 1.38398 1.30740 1.18667 0.85553 0.79075 0.81427 0.76194 1.20960 1.23019 1.19138 1.20895 0.89958 0.95225 0.89714 1.21568 0.95321 0.81126 0.99049 0.91289 1.45632 1.65162 1.13761 1.08224 1.18319 0.77658 0.86022 0.84225 1.90757 1.52428 1.70446 1.32192 1.19465 1.01449 0.93832 0.93554 1.21465 0.99496 0.94268 0.98914 1.16985 1.00051 0.90655 0.81446 1.91574 1.90662 1.83012 1.44935 1.21399 1.03337 1.03373 0.89302 1.17014 1.01132 0.89548 0.81953 1.91551 1.93478 1.78985 1.46647 1.21305 0.99392 0.93278 0.99761 0.92386 0.90520 0.93069 0.91871 0.88978 0.92435 0.96922 0.94644 0.93217 0.98306 0.75454 0.82063 0.80089 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.05 71.98 0.65 -2.10 16 2 C -0.09 -2.38 2.48 -10.77 -0.03 -2.40 16 3 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 4 C -0.12 -3.06 5.20 30.67 0.16 -2.90 16 5 C 0.13 4.93 6.52 86.36 0.56 5.49 16 6 N -0.60 -28.13 2.91 -699.11 -2.03 -30.16 16 7 C -0.25 -13.06 9.58 84.03 0.81 -12.25 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 9 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 10 N -0.93 -56.89 11.20 21.65 0.24 -56.65 16 11 Si 0.95 45.81 29.59 68.60 2.03 47.83 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.17 8.11 4.91 86.36 0.42 8.54 16 16 C 0.14 4.89 2.24 45.07 0.10 4.99 16 17 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 18 N -0.68 -22.29 4.20 -445.03 -1.87 -24.16 16 19 C 0.55 20.09 7.74 86.79 0.67 20.76 16 20 O -0.58 -25.87 16.01 -3.89 -0.06 -25.94 16 21 C -0.08 -2.33 5.87 -20.10 -0.12 -2.45 16 22 C -0.12 -2.83 9.52 22.58 0.21 -2.61 16 23 C 0.13 2.63 7.29 22.33 0.16 2.80 16 24 F -0.12 -2.45 17.26 44.97 0.78 -1.68 16 25 C -0.15 -2.92 10.00 22.41 0.22 -2.70 16 26 C 0.12 2.84 7.29 22.33 0.16 3.00 16 27 F -0.13 -2.97 17.26 44.97 0.78 -2.19 16 28 C -0.12 -3.28 9.57 22.58 0.22 -3.06 16 29 H 0.06 1.10 7.55 -2.39 -0.02 1.08 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.55 6.40 -2.39 -0.02 1.54 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.24 14.76 8.31 -92.71 -0.77 13.98 16 37 H 0.05 2.88 6.06 -2.39 -0.01 2.86 16 38 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 39 H 0.41 11.18 4.67 -92.71 -0.43 10.74 16 40 H 0.16 3.14 6.40 -2.91 -0.02 3.13 16 41 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.14 4.30 7.65 -2.91 -0.02 4.27 16 Total: -1.00 -69.18 349.26 5.11 -64.07 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.63 Total: 16.15 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 4.63 Total: 12.72 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -3.66 Total: -110.97 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.06 Total: -25.94 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 1.55 Total: -3.87 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.18 5.11 -64.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968624676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.401 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds