Wall clock time and date at job start Tue Mar 31 2020 15:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.47423 * 125.64884 * 359.69397 * 6 4 2 8 8 C 1.55132 * 104.71910 * 155.81614 * 7 6 4 9 9 C 1.55149 * 101.48552 * 37.29765 * 8 7 6 10 10 H 1.09000 * 110.87456 * 82.76578 * 9 8 7 11 11 N 1.46503 * 110.71879 * 205.96671 * 9 8 7 12 12 C 1.36936 * 119.99918 * 268.52244 * 11 9 8 13 13 H 1.07998 * 120.00522 * 0.02562 * 12 11 9 14 14 C 1.38816 * 119.99921 * 179.97438 * 12 11 9 15 15 N 1.31615 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99893 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47101 * 59.99847 * 16 14 12 18 18 H 1.48498 * 109.46825 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46999 * 299.99777 * 16 14 12 20 20 C 1.47025 * 125.64628 * 180.02562 * 6 4 2 21 21 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 22 22 C 1.38421 * 120.02030 * 59.72785 * 21 2 1 23 23 F 1.35094 * 120.01575 * 359.97438 * 22 21 2 24 24 C 1.38473 * 119.97077 * 179.79229 * 22 21 2 25 25 C 1.38210 * 120.02691 * 0.48213 * 24 22 21 26 26 C 1.38211 * 120.04780 * 359.74595 * 25 24 22 27 27 C 1.38418 * 120.02693 * 240.00025 * 21 2 1 28 28 F 1.35095 * 120.01219 * 359.97438 * 27 21 2 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08995 * 110.36467 * 274.74512 * 7 6 4 33 33 H 1.09000 * 110.36514 * 37.07023 * 7 6 4 34 34 H 1.08998 * 111.19351 * 279.18611 * 8 7 6 35 35 H 1.09005 * 110.89952 * 155.27662 * 8 7 6 36 36 H 0.97002 * 120.00339 * 88.52036 * 11 9 8 37 37 H 0.97004 * 120.00215 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.88290 * 300.43943 * 20 6 4 39 39 H 1.08996 * 109.88601 * 61.60527 * 20 6 4 40 40 H 1.08006 * 119.98803 * 180.23468 * 24 22 21 41 41 H 1.07998 * 119.97800 * 179.72750 * 25 24 22 42 42 H 1.07997 * 119.98760 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 0.8657 0.9284 -2.7337 8 6 1.2940 1.3917 -4.1509 9 6 1.5389 0.0332 -4.8592 10 1 0.6029 -0.3874 -5.2266 11 7 2.5015 0.1851 -5.9531 12 6 2.0602 0.4571 -7.2205 13 1 1.0026 0.5601 -7.4137 14 6 2.9723 0.6016 -8.2569 15 7 4.2612 0.4776 -8.0213 16 14 2.3704 0.9733 -9.9858 17 1 1.6227 2.2564 -9.9845 18 1 3.5337 1.0798 -10.9027 19 1 1.4764 -0.1201 -10.4445 20 6 2.1259 -0.8433 -3.7328 21 6 2.0324 -0.7104 1.2304 22 6 1.6936 -2.0339 1.4528 23 9 0.9121 -2.6894 0.5671 24 6 2.1594 -2.6870 2.5816 25 6 2.9539 -2.0148 3.4910 26 6 3.2889 -0.6919 3.2724 27 6 2.8282 -0.0382 2.1419 28 9 3.1555 1.2551 1.9286 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.1887 0.6524 -2.7248 33 1 1.0593 1.7142 -2.0035 34 1 2.2089 1.9829 -4.1124 35 1 0.4920 1.9471 -4.6373 36 1 3.4514 0.0931 -5.7796 37 1 4.8986 0.5782 -8.7456 38 1 3.2138 -0.8516 -3.7986 39 1 1.7397 -1.8593 -3.8141 40 1 1.8983 -3.7208 2.7534 41 1 3.3130 -2.5236 4.3734 42 1 3.9094 -0.1675 3.9839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969346524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:46 Heat of formation + Delta-G solvation = -79.451561 kcal Electronic energy + Delta-G solvation = -27624.871863 eV Core-core repulsion = 23434.392813 eV Total energy + Delta-G solvation = -4190.479049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.26360 -49.09548 -40.23296 -38.91799 -37.28508 -34.62985 -34.01104 -31.53013 -30.53815 -29.87275 -29.52195 -27.61875 -25.22951 -23.82105 -23.13215 -22.89711 -21.82435 -20.11109 -19.20698 -18.32638 -17.82183 -17.41435 -16.58798 -16.40111 -16.01977 -15.77022 -15.73960 -15.42388 -15.19773 -14.68584 -14.60633 -14.21456 -13.86563 -13.51236 -13.43205 -13.19785 -12.98917 -12.63202 -12.52926 -12.36805 -12.25831 -12.09911 -11.92569 -11.71987 -11.47258 -11.24039 -11.08663 -10.82896 -10.71315 -10.34142 -10.12805 -9.78002 -9.67465 -9.12363 -8.97891 -8.96285 -8.40718 -7.06196 -5.83008 -3.13926 0.69195 0.75571 2.74681 2.97029 3.24444 3.40723 3.45354 3.46517 3.67384 4.06917 4.17072 4.32870 4.49747 4.53623 4.61722 4.85144 4.90991 4.97938 5.01796 5.21860 5.31745 5.44799 5.45465 5.49724 5.55565 5.57047 5.64745 5.70679 5.73706 5.80056 5.87101 5.93583 5.95460 6.13304 6.25236 6.36352 6.49585 6.56290 6.59917 6.88304 7.63320 7.70467 8.28691 8.34371 9.45544 9.99798 10.34469 11.39079 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.002657 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.479747 B =10535.067122 C =10623.311871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.068 4.068 3 H 0.112 0.888 4 C 0.532 3.468 5 O -0.536 6.536 6 N -0.609 5.609 7 C 0.095 3.905 8 C -0.155 4.155 9 C 0.172 3.828 10 H 0.067 0.933 11 N -0.715 5.715 12 C -0.247 4.247 13 H 0.072 0.928 14 C -0.010 4.010 15 N -0.930 5.930 16 Si 0.910 3.090 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C 0.100 3.900 21 C -0.138 4.138 22 C 0.164 3.836 23 F -0.121 7.121 24 C -0.169 4.169 25 C -0.062 4.062 26 C -0.169 4.169 27 C 0.135 3.865 28 F -0.130 7.130 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -1.175 25.284 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.089 4.089 3 H 0.129 0.871 4 C 0.320 3.680 5 O -0.413 6.413 6 N -0.342 5.342 7 C -0.028 4.028 8 C -0.197 4.197 9 C 0.060 3.940 10 H 0.085 0.915 11 N -0.355 5.355 12 C -0.378 4.378 13 H 0.090 0.910 14 C -0.206 4.206 15 N -0.577 5.577 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.023 4.023 21 C -0.140 4.140 22 C 0.144 3.856 23 F -0.099 7.099 24 C -0.188 4.188 25 C -0.080 4.080 26 C -0.188 4.188 27 C 0.115 3.885 28 F -0.108 7.108 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.217 -1.689 25.155 26.224 hybrid contribution 0.057 0.429 -1.146 1.225 sum -7.160 -1.261 24.008 25.085 Atomic orbital electron populations 1.22014 0.91455 1.04009 1.03649 1.20095 0.98377 1.00623 0.89796 0.87051 1.19846 0.80522 0.84494 0.83164 1.90708 1.38242 1.26326 1.86032 1.48369 1.50736 1.29829 1.05298 1.22572 0.94355 0.87161 0.98678 1.23628 1.02143 1.01002 0.92889 1.21184 0.93934 0.91569 0.87290 0.91487 1.42365 1.04722 1.84614 1.03825 1.19178 0.92429 1.41270 0.84875 0.90985 1.24782 0.95279 1.02329 0.98241 1.69655 1.00154 1.55998 1.31930 0.86240 0.77319 0.78162 0.84261 1.21174 1.21655 1.21153 1.22362 1.00613 0.97324 0.81974 1.19389 1.02633 0.94287 0.97688 1.17085 0.91783 0.89057 0.87677 1.91520 1.71068 1.80326 1.66985 1.21205 1.01513 1.01602 0.94431 1.20824 0.95383 0.93180 0.98651 1.21131 1.03831 0.96063 0.97734 1.17155 0.97071 0.79128 0.95104 1.91514 1.90706 1.33857 1.94728 0.91293 0.90310 0.91157 0.91269 0.91251 0.90582 0.90468 0.77934 0.93275 0.91134 0.91635 0.84018 0.83961 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.78 37.16 0.33 -1.21 16 2 C -0.07 -0.85 2.14 -92.92 -0.20 -1.04 16 3 H 0.11 1.28 6.84 -51.93 -0.36 0.93 16 4 C 0.53 8.68 6.66 -10.99 -0.07 8.61 16 5 O -0.54 -10.62 14.91 5.56 0.08 -10.53 16 6 N -0.61 -9.66 3.32 -170.38 -0.57 -10.23 16 7 C 0.10 1.23 5.14 -2.41 -0.01 1.22 16 8 C -0.16 -2.49 6.78 -24.47 -0.17 -2.66 16 9 C 0.17 3.30 3.61 -66.10 -0.24 3.06 16 10 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 11 N -0.71 -17.50 5.22 -51.65 -0.27 -17.77 16 12 C -0.25 -6.64 9.96 -15.06 -0.15 -6.79 16 13 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 15 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 16 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.10 1.83 6.62 -3.06 -0.02 1.81 16 21 C -0.14 -1.71 4.40 -104.49 -0.46 -2.17 16 22 C 0.16 2.02 6.14 -39.43 -0.24 1.78 16 23 F -0.12 -1.69 13.81 2.25 0.03 -1.66 16 24 C -0.17 -1.58 10.02 -39.50 -0.40 -1.97 16 25 C -0.06 -0.47 10.04 -39.60 -0.40 -0.86 16 26 C -0.17 -1.44 10.02 -39.51 -0.40 -1.84 16 27 C 0.13 1.50 7.25 -39.43 -0.29 1.22 16 28 F -0.13 -1.50 16.19 2.25 0.04 -1.46 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.71 4.98 -51.93 -0.26 0.45 16 31 H 0.07 0.77 6.29 -51.93 -0.33 0.44 16 32 H 0.07 0.77 7.08 -51.93 -0.37 0.40 16 33 H 0.07 0.76 7.34 -51.93 -0.38 0.37 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.39 10.22 7.56 -40.82 -0.31 9.91 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 1.43 7.72 -51.93 -0.40 1.03 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -32.58 349.25 -7.85 -40.43 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.32 Total: 7.33 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.81 Total: -1.23 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.11 Total: -55.08 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.12 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.58 -7.85 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969346524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.020 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds