Wall clock time and date at job start Tue Mar 31 2020 15:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.47423 * 125.64884 * 359.69397 * 6 4 2 8 8 C 1.55132 * 104.71910 * 155.81614 * 7 6 4 9 9 C 1.55149 * 101.48552 * 37.29765 * 8 7 6 10 10 H 1.09000 * 110.87456 * 82.76578 * 9 8 7 11 11 N 1.46503 * 110.71879 * 205.96671 * 9 8 7 12 12 C 1.36936 * 119.99918 * 268.52244 * 11 9 8 13 13 H 1.07998 * 120.00522 * 0.02562 * 12 11 9 14 14 C 1.38816 * 119.99921 * 179.97438 * 12 11 9 15 15 N 1.31615 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99893 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47101 * 59.99847 * 16 14 12 18 18 H 1.48498 * 109.46825 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46999 * 299.99777 * 16 14 12 20 20 C 1.47025 * 125.64628 * 180.02562 * 6 4 2 21 21 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 22 22 C 1.38421 * 120.02030 * 59.72785 * 21 2 1 23 23 F 1.35094 * 120.01575 * 359.97438 * 22 21 2 24 24 C 1.38473 * 119.97077 * 179.79229 * 22 21 2 25 25 C 1.38210 * 120.02691 * 0.48213 * 24 22 21 26 26 C 1.38211 * 120.04780 * 359.74595 * 25 24 22 27 27 C 1.38418 * 120.02693 * 240.00025 * 21 2 1 28 28 F 1.35095 * 120.01219 * 359.97438 * 27 21 2 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08995 * 110.36467 * 274.74512 * 7 6 4 33 33 H 1.09000 * 110.36514 * 37.07023 * 7 6 4 34 34 H 1.08998 * 111.19351 * 279.18611 * 8 7 6 35 35 H 1.09005 * 110.89952 * 155.27662 * 8 7 6 36 36 H 0.97002 * 120.00339 * 88.52036 * 11 9 8 37 37 H 0.97004 * 120.00215 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.88290 * 300.43943 * 20 6 4 39 39 H 1.08996 * 109.88601 * 61.60527 * 20 6 4 40 40 H 1.08006 * 119.98803 * 180.23468 * 24 22 21 41 41 H 1.07998 * 119.97800 * 179.72750 * 25 24 22 42 42 H 1.07997 * 119.98760 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 0.8657 0.9284 -2.7337 8 6 1.2940 1.3917 -4.1509 9 6 1.5389 0.0332 -4.8592 10 1 0.6029 -0.3874 -5.2266 11 7 2.5015 0.1851 -5.9531 12 6 2.0602 0.4571 -7.2205 13 1 1.0026 0.5601 -7.4137 14 6 2.9723 0.6016 -8.2569 15 7 4.2612 0.4776 -8.0213 16 14 2.3704 0.9733 -9.9858 17 1 1.6227 2.2564 -9.9845 18 1 3.5337 1.0798 -10.9027 19 1 1.4764 -0.1201 -10.4445 20 6 2.1259 -0.8433 -3.7328 21 6 2.0324 -0.7104 1.2304 22 6 1.6936 -2.0339 1.4528 23 9 0.9121 -2.6894 0.5671 24 6 2.1594 -2.6870 2.5816 25 6 2.9539 -2.0148 3.4910 26 6 3.2889 -0.6919 3.2724 27 6 2.8282 -0.0382 2.1419 28 9 3.1555 1.2551 1.9286 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.1887 0.6524 -2.7248 33 1 1.0593 1.7142 -2.0035 34 1 2.2089 1.9829 -4.1124 35 1 0.4920 1.9471 -4.6373 36 1 3.4514 0.0931 -5.7796 37 1 4.8986 0.5782 -8.7456 38 1 3.2138 -0.8516 -3.7986 39 1 1.7397 -1.8593 -3.8141 40 1 1.8983 -3.7208 2.7534 41 1 3.3130 -2.5236 4.3734 42 1 3.9094 -0.1675 3.9839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969346524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:45 Heat of formation + Delta-G solvation = -99.587282 kcal Electronic energy + Delta-G solvation = -27625.745013 eV Core-core repulsion = 23434.392813 eV Total energy + Delta-G solvation = -4191.352200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.08143 -50.01584 -41.43735 -39.79725 -38.65443 -36.04246 -35.37187 -33.28034 -31.26344 -31.11203 -30.68227 -29.12353 -26.33374 -25.47108 -24.23850 -23.84280 -22.82709 -21.63069 -20.38958 -19.37416 -19.13211 -18.78572 -17.67515 -17.44101 -17.10717 -16.89907 -16.60272 -16.43665 -16.28445 -16.25725 -15.51517 -15.42427 -15.36441 -14.94892 -14.74930 -14.45080 -13.98816 -13.79713 -13.62408 -13.35150 -13.30038 -13.07221 -13.02427 -12.97742 -12.89138 -12.63710 -12.48442 -12.36868 -12.17683 -11.92625 -11.75983 -11.68095 -10.96344 -10.93460 -9.91989 -9.74009 -9.72237 -9.06686 -7.95743 -5.26629 -0.05519 0.00529 1.48526 1.49922 1.51790 1.57693 1.84320 2.40193 2.56523 2.90421 3.21117 3.31410 3.38650 3.46272 3.66925 3.71873 3.86210 3.89572 4.01179 4.03750 4.18791 4.23733 4.24967 4.34223 4.47147 4.59326 4.68325 4.72112 4.80707 4.84272 4.87356 4.96624 5.01840 5.05778 5.16217 5.17796 5.20414 5.23072 5.41399 5.52116 5.78651 6.24133 6.45089 7.01499 7.30470 8.01854 8.25893 9.27678 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.002657 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.479747 B =10535.067122 C =10623.311871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 H 0.122 0.878 4 C 0.526 3.474 5 O -0.579 6.579 6 N -0.610 5.610 7 C 0.101 3.899 8 C -0.145 4.145 9 C 0.167 3.833 10 H 0.075 0.925 11 N -0.731 5.731 12 C -0.241 4.241 13 H 0.085 0.915 14 C -0.077 4.077 15 N -0.972 5.972 16 Si 0.977 3.023 17 H -0.274 1.274 18 H -0.300 1.300 19 H -0.277 1.277 20 C 0.110 3.890 21 C -0.160 4.160 22 C 0.132 3.868 23 F -0.140 7.140 24 C -0.169 4.169 25 C -0.050 4.050 26 C -0.161 4.161 27 C 0.116 3.884 28 F -0.136 7.136 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.371 0.629 37 H 0.251 0.749 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.161 0.839 41 H 0.184 0.816 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 -0.371 27.528 29.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 H 0.140 0.860 4 C 0.315 3.685 5 O -0.459 6.459 6 N -0.343 5.343 7 C -0.020 4.020 8 C -0.186 4.186 9 C 0.057 3.943 10 H 0.093 0.907 11 N -0.370 5.370 12 C -0.373 4.373 13 H 0.103 0.897 14 C -0.269 4.269 15 N -0.623 5.623 16 Si 0.805 3.195 17 H -0.199 1.199 18 H -0.226 1.226 19 H -0.203 1.203 20 C -0.015 4.015 21 C -0.162 4.162 22 C 0.112 3.888 23 F -0.118 7.118 24 C -0.188 4.188 25 C -0.067 4.067 26 C -0.180 4.180 27 C 0.096 3.904 28 F -0.115 7.115 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.178 0.822 41 H 0.202 0.798 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.053 -0.860 27.440 28.907 hybrid contribution 0.614 0.114 -1.701 1.812 sum -8.439 -0.746 25.739 27.097 Atomic orbital electron populations 1.22016 0.89450 1.03727 1.05310 1.20112 0.99950 1.00328 0.87828 0.86040 1.20657 0.79639 0.84119 0.84050 1.90675 1.40124 1.28383 1.86699 1.48455 1.50993 1.30459 1.04406 1.22764 0.95296 0.86721 0.97238 1.23426 1.01944 0.98625 0.94585 1.21385 0.92896 0.93665 0.86348 0.90739 1.42553 1.04840 1.84992 1.04654 1.19627 0.92928 1.38963 0.85752 0.89709 1.25630 0.95451 1.03554 1.02247 1.69833 1.01384 1.58441 1.32613 0.85170 0.76480 0.78425 0.79412 1.19943 1.22636 1.20324 1.22034 0.98745 0.97211 0.83474 1.19501 1.03850 0.94751 0.98106 1.17490 0.93047 0.89543 0.88707 1.91465 1.71787 1.80675 1.67880 1.21572 1.01038 1.02566 0.93631 1.21320 0.93609 0.92690 0.99099 1.21551 1.02956 0.96497 0.96998 1.17422 0.97699 0.79135 0.96102 1.91491 1.90827 1.34281 1.94894 0.89081 0.89085 0.92410 0.88199 0.88256 0.92546 0.88806 0.79717 0.94050 0.94043 0.92291 0.82176 0.79841 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.78 71.98 0.63 -2.03 16 2 C -0.06 -1.47 2.14 -12.29 -0.03 -1.49 16 3 H 0.12 2.61 6.84 -2.39 -0.02 2.59 16 4 C 0.53 17.23 6.66 87.66 0.58 17.81 16 5 O -0.58 -23.76 14.91 -3.03 -0.05 -23.81 16 6 N -0.61 -19.15 3.32 -811.36 -2.69 -21.84 16 7 C 0.10 2.37 5.14 86.93 0.45 2.82 16 8 C -0.15 -4.45 6.78 32.06 0.22 -4.23 16 9 C 0.17 6.38 3.61 46.18 0.17 6.55 16 10 H 0.07 2.75 8.09 -2.39 -0.02 2.73 16 11 N -0.73 -36.58 5.22 -317.34 -1.66 -38.24 16 12 C -0.24 -13.03 9.96 84.03 0.84 -12.19 16 13 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 14 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 15 N -0.97 -59.94 13.06 21.65 0.28 -59.65 16 16 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C 0.11 4.13 6.62 86.73 0.57 4.70 16 21 C -0.16 -3.87 4.40 -19.78 -0.09 -3.96 16 22 C 0.13 3.20 6.14 22.37 0.14 3.33 16 23 F -0.14 -4.00 13.81 44.97 0.62 -3.38 16 24 C -0.17 -2.87 10.02 22.32 0.22 -2.64 16 25 C -0.05 -0.58 10.04 22.26 0.22 -0.36 16 26 C -0.16 -2.30 10.02 22.32 0.22 -2.08 16 27 C 0.12 2.42 7.25 22.37 0.16 2.58 16 28 F -0.14 -2.98 16.19 44.97 0.73 -2.25 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.36 4.98 -2.39 -0.01 1.35 16 31 H 0.06 1.21 6.29 -2.39 -0.02 1.19 16 32 H 0.10 1.82 7.08 -2.39 -0.02 1.80 16 33 H 0.10 1.81 7.34 -2.39 -0.02 1.80 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.37 20.55 7.56 -92.71 -0.70 19.85 16 37 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.04 1.79 7.72 -2.39 -0.02 1.77 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 40 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -74.29 349.25 4.41 -69.88 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.36 Total: 26.85 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.78 Total: 4.91 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -4.07 Total: -119.73 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 1.35 Total: -5.63 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -74.29 4.41 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969346524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.708 kcal (2) G-P(sol) polarization free energy of solvation -74.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds