Wall clock time and date at job start Tue Mar 31 2020 15:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50695 * 109.47377 * 119.99944 * 2 1 3 5 5 O 1.21281 * 119.99984 * 34.89188 * 4 2 1 6 6 N 1.34778 * 120.00593 * 214.88804 * 4 2 1 7 7 C 1.47032 * 125.64069 * 355.01921 * 6 4 2 8 8 C 1.54330 * 107.26497 * 181.02479 * 7 6 4 9 9 C 1.55151 * 102.94387 * 22.19068 * 8 7 6 10 10 H 1.08998 * 111.03523 * 82.59121 * 9 8 7 11 11 N 1.46504 * 111.00445 * 206.42012 * 9 8 7 12 12 C 1.36939 * 120.00450 * 267.20083 * 11 9 8 13 13 H 1.08001 * 119.99462 * 0.02562 * 12 11 9 14 14 C 1.38803 * 120.00109 * 179.97438 * 12 11 9 15 15 N 1.31623 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00356 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47230 * 89.99748 * 16 14 12 18 18 H 1.48492 * 109.47476 * 210.00299 * 16 14 12 19 19 H 1.48504 * 109.46765 * 330.00415 * 16 14 12 20 20 C 1.47421 * 125.65255 * 174.97737 * 6 4 2 21 21 C 1.50698 * 109.47119 * 240.00028 * 2 1 3 22 22 C 1.38261 * 119.96431 * 119.99815 * 21 2 1 23 23 C 1.38208 * 120.07059 * 179.97438 * 22 21 2 24 24 C 1.38417 * 120.00274 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.03691 * 180.02562 * 24 23 22 26 26 C 1.38648 * 119.92377 * 359.97438 * 24 23 22 27 27 F 1.35106 * 120.03165 * 179.97438 * 26 24 23 28 28 C 1.38214 * 119.96689 * 299.72257 * 21 2 1 29 29 H 1.09003 * 109.47246 * 304.96838 * 1 2 3 30 30 H 1.08999 * 109.47480 * 64.97478 * 1 2 3 31 31 H 1.09009 * 109.47147 * 184.97479 * 1 2 3 32 32 H 1.09003 * 109.88155 * 300.43685 * 7 6 4 33 33 H 1.08991 * 109.88132 * 61.45445 * 7 6 4 34 34 H 1.09008 * 110.71568 * 263.82686 * 8 7 6 35 35 H 1.09000 * 110.71598 * 140.55950 * 8 7 6 36 36 H 0.97002 * 119.99777 * 86.92126 * 11 9 8 37 37 H 0.96999 * 119.99782 * 180.02562 * 15 14 12 38 38 H 1.09000 * 110.36785 * 37.07175 * 20 6 4 39 39 H 1.08997 * 110.45954 * 274.78829 * 20 6 4 40 40 H 1.08001 * 119.96479 * 359.97438 * 22 21 2 41 41 H 1.08002 * 119.99910 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99533 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.4222 -1.6601 1.6739 6 7 3.1596 -0.2904 1.8381 7 6 4.0489 0.7750 1.3523 8 6 5.2174 0.8886 2.3540 9 6 5.2191 -0.5006 3.0450 10 1 5.7531 -1.2361 2.4434 11 7 5.7876 -0.4161 4.3926 12 6 7.1222 -0.6515 4.5888 13 1 7.7559 -0.8990 3.7499 14 6 7.6609 -0.5709 5.8655 15 7 6.8887 -0.2688 6.8877 16 14 9.4813 -0.8926 6.1333 17 1 10.2333 0.3814 6.0047 18 1 9.6900 -1.4558 7.4913 19 1 9.9679 -1.8593 5.1164 20 6 3.7048 -0.8224 3.1003 21 6 2.0323 -0.7104 -1.2304 22 6 2.8271 -0.0377 -2.1401 23 6 3.2894 -0.6873 -3.2690 24 6 2.9564 -2.0124 -3.4903 25 9 3.4084 -2.6482 -4.5933 26 6 2.1594 -2.6869 -2.5781 27 9 1.8326 -3.9803 -2.7921 28 6 1.7027 -2.0353 -1.4456 29 1 -0.3634 0.5890 0.8422 30 1 -0.3634 0.4347 -0.9312 31 1 -0.3634 -1.0239 0.0891 32 1 4.4311 0.5172 0.3646 33 1 3.5054 1.7185 1.3047 34 1 5.0279 1.6799 3.0794 35 1 6.1582 1.0605 1.8311 36 1 5.2193 -0.1895 5.1453 37 1 7.2652 -0.2122 7.7798 38 1 3.5477 -1.8995 3.1572 39 1 3.2426 -0.3266 3.9539 40 1 3.0869 0.9964 -1.9683 41 1 3.9099 -0.1606 -3.9790 42 1 1.0858 -2.5610 -0.7318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970759212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:53 Heat of formation + Delta-G solvation = -88.414483 kcal Electronic energy + Delta-G solvation = -27165.440518 eV Core-core repulsion = 22974.572807 eV Total energy + Delta-G solvation = -4190.867711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.71082 -48.78466 -40.57441 -39.04235 -37.41483 -34.31575 -34.04311 -31.55392 -31.14451 -29.62975 -29.49277 -27.98317 -25.12242 -23.86562 -23.43619 -22.87668 -21.84956 -20.17273 -19.10610 -18.20402 -17.76038 -17.46003 -17.25164 -16.77754 -16.55471 -16.03343 -15.31063 -15.19028 -15.05516 -14.72597 -14.46897 -14.32729 -13.99377 -13.75245 -13.51227 -13.26205 -13.00199 -12.92937 -12.78062 -12.46044 -12.15944 -12.00747 -11.93612 -11.80218 -11.51354 -11.40053 -11.22806 -10.89126 -10.75328 -10.34974 -10.12051 -9.89608 -9.79352 -9.39073 -9.01407 -8.92604 -8.49669 -7.10482 -5.87003 -3.17915 0.51467 0.65454 2.56347 2.90400 3.11181 3.38074 3.44023 3.45504 3.46478 4.01821 4.15564 4.20650 4.44240 4.50695 4.58773 4.73126 4.82355 4.95781 4.98877 5.19162 5.25695 5.32343 5.46818 5.48276 5.50899 5.53355 5.54630 5.58520 5.65744 5.69722 5.86948 5.91361 6.02521 6.08613 6.17518 6.29421 6.39066 6.46454 6.55460 6.83259 7.61021 7.62037 8.16936 8.30354 9.42084 9.95314 10.30154 11.35088 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002864 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.015991 B = 9775.410814 C =10531.688559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 H 0.103 0.897 4 C 0.532 3.468 5 O -0.539 6.539 6 N -0.609 5.609 7 C 0.099 3.901 8 C -0.156 4.156 9 C 0.172 3.828 10 H 0.066 0.934 11 N -0.713 5.713 12 C -0.247 4.247 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.930 5.930 16 Si 0.909 3.091 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.096 3.904 21 C -0.056 4.056 22 C -0.091 4.091 23 C -0.124 4.124 24 C 0.066 3.934 25 F -0.129 7.129 26 C 0.071 3.929 27 F -0.127 7.127 28 C -0.110 4.110 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 4.102 -20.741 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 H 0.121 0.879 4 C 0.320 3.680 5 O -0.417 6.417 6 N -0.342 5.342 7 C -0.024 4.024 8 C -0.197 4.197 9 C 0.060 3.940 10 H 0.084 0.916 11 N -0.353 5.353 12 C -0.377 4.377 13 H 0.090 0.910 14 C -0.206 4.206 15 N -0.577 5.577 16 Si 0.740 3.260 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.027 4.027 21 C -0.057 4.057 22 C -0.109 4.109 23 C -0.142 4.142 24 C 0.045 3.955 25 F -0.108 7.108 26 C 0.051 3.949 27 F -0.106 7.106 28 C -0.129 4.129 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.831 3.423 -20.547 23.956 hybrid contribution 0.976 -0.312 0.191 1.042 sum -10.856 3.111 -20.356 23.279 Atomic orbital electron populations 1.21721 0.91118 1.03937 1.02467 1.20293 0.98501 0.99891 0.90127 0.87859 1.19956 0.79703 0.83984 0.84374 1.90697 1.57077 1.27779 1.66101 1.48466 1.23345 1.37460 1.24973 1.22147 0.91842 0.89865 0.98546 1.23435 0.96044 1.02316 0.97923 1.21289 0.90070 0.93731 0.88915 0.91552 1.42261 1.07687 1.83169 1.02211 1.19222 0.84821 1.40580 0.93124 0.90958 1.24771 0.98132 1.02074 0.95575 1.69662 1.34495 1.54580 0.98981 0.86168 0.84811 0.77828 0.77225 1.21601 1.21682 1.20645 1.22633 0.95458 0.99781 0.84863 1.19371 0.97535 0.93208 0.95595 1.21021 0.96360 1.00738 0.92828 1.21057 1.01625 0.92071 0.99493 1.17741 0.99980 0.92182 0.85554 1.91532 1.87259 1.81866 1.50140 1.17650 1.00863 0.79988 0.96444 1.91545 1.90939 1.33413 1.94690 1.21111 1.00860 0.94959 0.95972 0.91547 0.91433 0.90890 0.91826 0.91915 0.90513 0.90629 0.77926 0.93310 0.90502 0.91252 0.83861 0.83384 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.69 37.15 0.32 -0.82 16 2 C -0.07 -0.63 2.53 -92.93 -0.24 -0.86 16 3 H 0.10 0.73 6.69 -51.93 -0.35 0.38 16 4 C 0.53 7.35 6.49 -10.99 -0.07 7.27 16 5 O -0.54 -9.29 15.86 5.56 0.09 -9.20 16 6 N -0.61 -8.61 3.33 -170.52 -0.57 -9.18 16 7 C 0.10 1.15 6.16 -3.06 -0.02 1.13 16 8 C -0.16 -2.33 6.65 -24.90 -0.17 -2.50 16 9 C 0.17 3.19 3.71 -65.78 -0.24 2.94 16 10 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 11 N -0.71 -16.89 5.24 -51.35 -0.27 -17.16 16 12 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 13 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 15 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 16 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.10 1.63 6.58 -2.53 -0.02 1.61 16 21 C -0.06 -0.52 4.77 -104.62 -0.50 -1.02 16 22 C -0.09 -0.66 9.67 -39.58 -0.38 -1.04 16 23 C -0.12 -0.96 10.02 -39.53 -0.40 -1.36 16 24 C 0.07 0.68 7.31 -39.36 -0.29 0.40 16 25 F -0.13 -1.47 17.18 2.25 0.04 -1.44 16 26 C 0.07 0.81 7.31 -39.37 -0.29 0.52 16 27 F -0.13 -1.63 17.18 2.25 0.04 -1.59 16 28 C -0.11 -1.20 8.82 -39.53 -0.35 -1.55 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.71 7.12 -51.92 -0.37 0.34 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.59 7.72 -51.93 -0.40 0.18 16 34 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.39 9.77 7.76 -40.82 -0.32 9.45 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 39 H 0.07 1.21 8.00 -51.93 -0.42 0.80 16 40 H 0.14 0.64 7.94 -52.49 -0.42 0.22 16 41 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.15 1.78 7.14 -52.49 -0.37 1.40 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -31.24 360.26 -7.98 -39.22 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.56 Total: 6.01 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.88 Total: -2.29 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.11 Total: -52.79 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.24 -7.98 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970759212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.196 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds