Wall clock time and date at job start Tue Mar 31 2020 15:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47030 * 2 1 4 4 C 1.50695 * 109.47377 * 119.99944 * 2 1 3 5 5 O 1.21281 * 119.99984 * 34.89188 * 4 2 1 6 6 N 1.34778 * 120.00593 * 214.88804 * 4 2 1 7 7 C 1.47032 * 125.64069 * 355.01921 * 6 4 2 8 8 C 1.54330 * 107.26497 * 181.02479 * 7 6 4 9 9 C 1.55151 * 102.94387 * 22.19068 * 8 7 6 10 10 H 1.08998 * 111.03523 * 82.59121 * 9 8 7 11 11 N 1.46504 * 111.00445 * 206.42012 * 9 8 7 12 12 C 1.36939 * 120.00450 * 267.20083 * 11 9 8 13 13 H 1.08001 * 119.99462 * 0.02562 * 12 11 9 14 14 C 1.38803 * 120.00109 * 179.97438 * 12 11 9 15 15 N 1.31623 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00356 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47230 * 89.99748 * 16 14 12 18 18 H 1.48492 * 109.47476 * 210.00299 * 16 14 12 19 19 H 1.48504 * 109.46765 * 330.00415 * 16 14 12 20 20 C 1.47421 * 125.65255 * 174.97737 * 6 4 2 21 21 C 1.50698 * 109.47119 * 240.00028 * 2 1 3 22 22 C 1.38261 * 119.96431 * 119.99815 * 21 2 1 23 23 C 1.38208 * 120.07059 * 179.97438 * 22 21 2 24 24 C 1.38417 * 120.00274 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.03691 * 180.02562 * 24 23 22 26 26 C 1.38648 * 119.92377 * 359.97438 * 24 23 22 27 27 F 1.35106 * 120.03165 * 179.97438 * 26 24 23 28 28 C 1.38214 * 119.96689 * 299.72257 * 21 2 1 29 29 H 1.09003 * 109.47246 * 304.96838 * 1 2 3 30 30 H 1.08999 * 109.47480 * 64.97478 * 1 2 3 31 31 H 1.09009 * 109.47147 * 184.97479 * 1 2 3 32 32 H 1.09003 * 109.88155 * 300.43685 * 7 6 4 33 33 H 1.08991 * 109.88132 * 61.45445 * 7 6 4 34 34 H 1.09008 * 110.71568 * 263.82686 * 8 7 6 35 35 H 1.09000 * 110.71598 * 140.55950 * 8 7 6 36 36 H 0.97002 * 119.99777 * 86.92126 * 11 9 8 37 37 H 0.96999 * 119.99782 * 180.02562 * 15 14 12 38 38 H 1.09000 * 110.36785 * 37.07175 * 20 6 4 39 39 H 1.08997 * 110.45954 * 274.78829 * 20 6 4 40 40 H 1.08001 * 119.96479 * 359.97438 * 22 21 2 41 41 H 1.08002 * 119.99910 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99533 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.4222 -1.6601 1.6739 6 7 3.1596 -0.2904 1.8381 7 6 4.0489 0.7750 1.3523 8 6 5.2174 0.8886 2.3540 9 6 5.2191 -0.5006 3.0450 10 1 5.7531 -1.2361 2.4434 11 7 5.7876 -0.4161 4.3926 12 6 7.1222 -0.6515 4.5888 13 1 7.7559 -0.8990 3.7499 14 6 7.6609 -0.5709 5.8655 15 7 6.8887 -0.2688 6.8877 16 14 9.4813 -0.8926 6.1333 17 1 10.2333 0.3814 6.0047 18 1 9.6900 -1.4558 7.4913 19 1 9.9679 -1.8593 5.1164 20 6 3.7048 -0.8224 3.1003 21 6 2.0323 -0.7104 -1.2304 22 6 2.8271 -0.0377 -2.1401 23 6 3.2894 -0.6873 -3.2690 24 6 2.9564 -2.0124 -3.4903 25 9 3.4084 -2.6482 -4.5933 26 6 2.1594 -2.6869 -2.5781 27 9 1.8326 -3.9803 -2.7921 28 6 1.7027 -2.0353 -1.4456 29 1 -0.3634 0.5890 0.8422 30 1 -0.3634 0.4347 -0.9312 31 1 -0.3634 -1.0239 0.0891 32 1 4.4311 0.5172 0.3646 33 1 3.5054 1.7185 1.3047 34 1 5.0279 1.6799 3.0794 35 1 6.1582 1.0605 1.8311 36 1 5.2193 -0.1895 5.1453 37 1 7.2652 -0.2122 7.7798 38 1 3.5477 -1.8995 3.1572 39 1 3.2426 -0.3266 3.9539 40 1 3.0869 0.9964 -1.9683 41 1 3.9099 -0.1606 -3.9790 42 1 1.0858 -2.5610 -0.7318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970759212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:52 Heat of formation + Delta-G solvation = -107.116469 kcal Electronic energy + Delta-G solvation = -27166.251497 eV Core-core repulsion = 22974.572807 eV Total energy + Delta-G solvation = -4191.678690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.55771 -49.64323 -41.54859 -39.94720 -38.65858 -35.93711 -34.98145 -33.24824 -31.86764 -31.00408 -30.21589 -29.40901 -26.29367 -25.20520 -24.46857 -23.88396 -22.73275 -21.62414 -20.10084 -19.32521 -19.01165 -18.64101 -18.15402 -17.70733 -17.39994 -17.29167 -16.50773 -16.29629 -16.07240 -15.85760 -15.58035 -15.44894 -15.01588 -14.82686 -14.68446 -14.48141 -14.32392 -13.94598 -13.61253 -13.47606 -13.21309 -13.15124 -13.02335 -12.91272 -12.69305 -12.66634 -12.33317 -12.25406 -12.15164 -12.13210 -11.74572 -11.57830 -10.95382 -10.93535 -10.10955 -9.69991 -9.65185 -9.04473 -7.95545 -5.25462 -0.21633 -0.03798 1.49336 1.50794 1.53097 1.58915 1.90356 2.32100 2.57209 2.73722 3.24534 3.34820 3.42888 3.49341 3.60781 3.74035 3.93599 3.94725 4.05204 4.08697 4.16434 4.28253 4.32931 4.40766 4.53318 4.65204 4.73886 4.78739 4.84808 4.86649 4.88632 4.94965 5.01932 5.03155 5.20455 5.23129 5.29683 5.38011 5.44581 5.54428 5.69351 6.25516 6.54802 7.09381 7.32388 8.04189 8.27787 9.27713 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.002864 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.015991 B = 9775.410814 C =10531.688559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.054 4.054 3 H 0.144 0.856 4 C 0.526 3.474 5 O -0.584 6.584 6 N -0.610 5.610 7 C 0.103 3.897 8 C -0.145 4.145 9 C 0.164 3.836 10 H 0.058 0.942 11 N -0.729 5.729 12 C -0.241 4.241 13 H 0.080 0.920 14 C -0.073 4.073 15 N -0.969 5.969 16 Si 0.972 3.028 17 H -0.284 1.284 18 H -0.299 1.299 19 H -0.270 1.270 20 C 0.105 3.895 21 C -0.060 4.060 22 C -0.070 4.070 23 C -0.111 4.111 24 C 0.051 3.949 25 F -0.140 7.140 26 C 0.042 3.958 27 F -0.146 7.146 28 C -0.123 4.123 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.190 0.810 41 H 0.181 0.819 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 7.063 -23.496 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 H 0.162 0.838 4 C 0.315 3.685 5 O -0.464 6.464 6 N -0.343 5.343 7 C -0.018 4.018 8 C -0.185 4.185 9 C 0.054 3.946 10 H 0.077 0.923 11 N -0.368 5.368 12 C -0.373 4.373 13 H 0.098 0.902 14 C -0.265 4.265 15 N -0.619 5.619 16 Si 0.801 3.199 17 H -0.211 1.211 18 H -0.226 1.226 19 H -0.195 1.195 20 C -0.020 4.020 21 C -0.061 4.061 22 C -0.088 4.088 23 C -0.129 4.129 24 C 0.031 3.969 25 F -0.119 7.119 26 C 0.022 3.978 27 F -0.125 7.125 28 C -0.142 4.142 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.208 0.792 41 H 0.199 0.801 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.058 6.399 -23.385 26.647 hybrid contribution 0.668 -1.269 0.989 1.742 sum -10.390 5.130 -22.395 25.216 Atomic orbital electron populations 1.21750 0.90701 1.02814 1.04013 1.20344 0.98794 1.01025 0.87316 0.83802 1.20890 0.78853 0.83490 0.85220 1.90685 1.58280 1.29903 1.67548 1.48558 1.23948 1.37976 1.23831 1.22334 0.90364 0.90736 0.98400 1.23210 0.98400 0.98687 0.98237 1.21457 0.90361 0.96062 0.86761 0.92349 1.42409 1.06892 1.83526 1.03977 1.19607 0.86088 1.38389 0.93188 0.90226 1.25550 1.02097 1.03266 0.95596 1.69816 1.36107 1.56909 0.99077 0.85159 0.80253 0.77818 0.76630 1.21055 1.22632 1.19511 1.22254 0.94744 0.98394 0.86589 1.19466 0.98112 0.92386 0.96144 1.21491 0.93844 1.02340 0.91128 1.21476 1.00820 0.90577 1.00052 1.18072 1.00265 0.93372 0.85154 1.91502 1.87397 1.82353 1.50611 1.17938 1.02559 0.79659 0.97634 1.91485 1.91347 1.34776 1.94902 1.21055 1.01370 0.96161 0.95604 0.91334 0.88671 0.93284 0.88685 0.87943 0.91603 0.89592 0.79353 0.93999 0.92972 0.92283 0.79241 0.80122 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.69 71.98 0.63 -1.33 16 2 C -0.05 -0.81 2.53 -12.29 -0.03 -0.84 16 3 H 0.14 1.03 6.69 -2.39 -0.02 1.01 16 4 C 0.53 13.67 6.49 87.66 0.57 14.24 16 5 O -0.58 -20.60 15.86 -3.03 -0.05 -20.65 16 6 N -0.61 -15.94 3.33 -811.78 -2.70 -18.64 16 7 C 0.10 1.89 6.16 86.73 0.53 2.43 16 8 C -0.14 -3.92 6.65 31.78 0.21 -3.71 16 9 C 0.16 5.98 3.71 46.38 0.17 6.16 16 10 H 0.06 2.22 8.09 -2.39 -0.02 2.20 16 11 N -0.73 -34.98 5.24 -316.38 -1.66 -36.64 16 12 C -0.24 -12.79 9.96 84.03 0.84 -11.95 16 13 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 14 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 15 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 16 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.10 3.60 6.58 86.86 0.57 4.17 16 21 C -0.06 -0.91 4.77 -19.87 -0.09 -1.01 16 22 C -0.07 -0.61 9.67 22.27 0.22 -0.40 16 23 C -0.11 -1.22 10.02 22.31 0.22 -1.00 16 24 C 0.05 0.98 7.31 22.41 0.16 1.15 16 25 F -0.14 -3.06 17.18 44.97 0.77 -2.29 16 26 C 0.04 0.97 7.31 22.41 0.16 1.13 16 27 F -0.15 -4.00 17.18 44.97 0.77 -3.23 16 28 C -0.12 -2.64 8.82 22.30 0.20 -2.44 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.95 7.12 -2.38 -0.02 0.94 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.20 7.72 -2.39 -0.02 1.18 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.37 19.54 7.76 -92.71 -0.72 18.82 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.05 2.01 7.99 -2.39 -0.02 1.99 16 39 H 0.06 2.13 8.00 -2.39 -0.02 2.12 16 40 H 0.19 -0.01 7.94 -2.91 -0.02 -0.04 16 41 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.13 3.32 7.14 -2.91 -0.02 3.30 16 Total: -1.00 -73.11 360.26 4.61 -68.50 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.33 Total: 20.78 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 4.82 Total: 3.02 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.08 Total: -112.97 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 1.55 Total: -5.52 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.11 4.61 -68.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970759212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.617 kcal (2) G-P(sol) polarization free energy of solvation -73.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds