Wall clock time and date at job start Tue Mar 31 2020 14:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87280 * 2 1 4 4 C 1.54325 * 109.88413 * 238.98354 * 2 1 3 5 5 H 1.08997 * 110.72163 * 336.60220 * 4 2 1 6 6 N 1.46503 * 110.87087 * 99.80075 * 4 2 1 7 7 C 1.36939 * 119.99620 * 200.06164 * 6 4 2 8 8 H 1.08002 * 120.00422 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99685 * 180.02562 * 7 6 4 10 10 N 1.31623 * 119.99685 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00090 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46907 * 90.00212 * 11 9 7 13 13 H 1.48506 * 109.47039 * 210.00370 * 11 9 7 14 14 H 1.48498 * 109.46962 * 329.99948 * 11 9 7 15 15 C 1.55154 * 102.94303 * 218.23776 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 110.00093 * 121.06049 * 2 1 3 18 18 C 1.34774 * 125.79121 * 298.43214 * 17 2 1 19 19 O 1.21280 * 120.00501 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99753 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47230 * 179.97438 * 20 18 17 22 22 C 1.38262 * 119.96457 * 269.72382 * 21 20 18 23 23 C 1.38214 * 120.07081 * 179.72522 * 22 21 20 24 24 C 1.38413 * 120.00096 * 0.54253 * 23 22 21 25 25 F 1.35099 * 120.03593 * 179.74639 * 24 23 22 26 26 C 1.38651 * 119.92818 * 359.73296 * 24 23 22 27 27 F 1.35095 * 120.03510 * 180.02562 * 26 24 23 28 28 C 1.38208 * 119.96923 * 89.99377 * 21 20 18 29 29 H 1.08995 * 109.47174 * 181.01182 * 1 2 3 30 30 H 1.08995 * 109.47106 * 301.02210 * 1 2 3 31 31 H 1.09007 * 109.46933 * 61.01664 * 1 2 3 32 32 H 0.96998 * 120.00254 * 20.06980 * 6 4 2 33 33 H 0.97008 * 119.99561 * 179.97438 * 10 9 7 34 34 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 35 35 H 1.08999 * 111.00564 * 153.57779 * 15 4 2 36 36 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 37 37 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 38 38 H 1.09001 * 109.47204 * 299.99785 * 20 18 17 39 39 H 1.09000 * 109.47543 * 59.99762 * 20 18 17 40 40 H 1.08000 * 119.96392 * 0.02562 * 22 21 20 41 41 H 1.08003 * 119.99862 * 180.27979 * 23 22 21 42 42 H 1.08005 * 119.99755 * 0.02809 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 1 1.3062 -1.4456 -1.6187 6 7 2.4515 0.1962 -2.2915 7 6 2.5504 -0.2250 -3.5908 8 1 2.3356 -1.2529 -3.8432 9 6 2.9268 0.6693 -4.5835 10 7 3.0213 0.2646 -5.8324 11 14 3.2990 2.4470 -4.1470 12 1 4.7413 2.5853 -3.8218 13 1 2.9658 3.3203 -5.3010 14 1 2.4857 2.8487 -2.9713 15 6 3.2900 -1.5101 -0.6954 16 6 2.8195 -1.8770 0.7342 17 7 2.0338 -0.7141 1.1856 18 6 1.8143 -0.3646 2.4686 19 8 1.1489 0.6166 2.7246 20 6 2.3956 -1.1929 3.5852 21 6 2.0063 -0.5924 4.9114 22 6 2.8205 0.3531 5.5070 23 6 2.4628 0.9095 6.7205 24 6 1.2939 0.5121 7.3464 25 9 0.9461 1.0517 8.5351 26 6 0.4803 -0.4403 6.7519 27 9 -0.6613 -0.8294 7.3606 28 6 0.8386 -0.9914 5.5338 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3633 0.5296 0.8806 31 1 -0.3633 0.4980 -0.8990 32 1 2.6442 1.1194 -2.0650 33 1 3.2839 0.8897 -6.5262 34 1 4.1665 -0.8628 -0.6642 35 1 3.4888 -2.4062 -1.2833 36 1 2.1955 -2.7704 0.7107 37 1 3.6778 -2.0317 1.3880 38 1 2.0116 -2.2110 3.5203 39 1 3.4821 -1.2083 3.4987 40 1 3.7346 0.6608 5.0210 41 1 3.0974 1.6513 7.1825 42 1 0.2058 -1.7336 5.0699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986761973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:04 Heat of formation + Delta-G solvation = -101.845292 kcal Electronic energy + Delta-G solvation = -26871.439554 eV Core-core repulsion = 22679.989439 eV Total energy + Delta-G solvation = -4191.450114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.53542 -49.62242 -41.38148 -40.03374 -38.61930 -35.98776 -33.96602 -33.33896 -32.21216 -31.80809 -31.18481 -28.33529 -26.87051 -24.59306 -24.29585 -23.98587 -22.78576 -21.67481 -20.20686 -19.41035 -18.95434 -18.26885 -18.12962 -17.89880 -17.39815 -17.25489 -16.41379 -16.30381 -16.05198 -15.85069 -15.55534 -15.28644 -15.17288 -14.95839 -14.70287 -14.65030 -14.20675 -13.99331 -13.71543 -13.47879 -13.32098 -13.08362 -13.02721 -12.88971 -12.71496 -12.63061 -12.47755 -12.24662 -12.20988 -11.97514 -11.80328 -11.51177 -10.97130 -10.83645 -10.07011 -9.67133 -9.62103 -9.30507 -8.01528 -5.35165 -0.15993 0.01150 1.39117 1.40218 1.47227 1.68642 1.90748 2.42036 2.48268 2.77717 3.27061 3.28886 3.46398 3.53624 3.58794 3.62356 3.83803 3.99745 4.06323 4.11883 4.16471 4.36214 4.38366 4.46110 4.50092 4.60320 4.68506 4.74654 4.79131 4.86410 4.91065 4.96815 5.02367 5.05043 5.23931 5.28430 5.33683 5.36214 5.48033 5.72918 5.78821 6.22339 6.63215 7.06958 7.20967 7.82666 7.99671 9.19398 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.025998 B = 0.002468 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.748653 B =11344.247779 C =11594.183375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.132 3.868 3 H 0.052 0.948 4 C 0.170 3.830 5 H 0.067 0.933 6 N -0.746 5.746 7 C -0.222 4.222 8 H 0.066 0.934 9 C -0.059 4.059 10 N -0.981 5.981 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.299 1.299 14 H -0.259 1.259 15 C -0.150 4.150 16 C 0.104 3.896 17 N -0.610 5.610 18 C 0.525 3.475 19 O -0.580 6.580 20 C -0.090 4.090 21 C -0.049 4.049 22 C -0.083 4.083 23 C -0.121 4.121 24 C 0.043 3.957 25 F -0.142 7.142 26 C 0.045 3.955 27 F -0.143 7.143 28 C -0.114 4.114 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.363 0.637 33 H 0.257 0.743 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -5.914 26.840 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 H 0.070 0.930 4 C 0.061 3.939 5 H 0.085 0.915 6 N -0.388 5.388 7 C -0.353 4.353 8 H 0.084 0.916 9 C -0.251 4.251 10 N -0.631 5.631 11 Si 0.774 3.226 12 H -0.204 1.204 13 H -0.226 1.226 14 H -0.184 1.184 15 C -0.190 4.190 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.460 6.460 20 C -0.129 4.129 21 C -0.049 4.049 22 C -0.101 4.101 23 C -0.140 4.140 24 C 0.023 3.977 25 F -0.121 7.121 26 C 0.025 3.975 27 F -0.122 7.122 28 C -0.133 4.133 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.196 0.804 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.273 -5.519 26.945 27.534 hybrid contribution -0.409 1.441 -0.170 1.508 sum 0.864 -4.077 26.775 27.097 Atomic orbital electron populations 1.21964 0.94548 1.02445 1.01645 1.21609 0.94626 0.95680 0.85346 0.92958 1.21424 0.95462 0.90924 0.86043 0.91525 1.42708 1.83091 1.09029 1.03996 1.18976 1.36846 0.95891 0.83576 0.91582 1.25386 1.02732 1.01890 0.95105 1.69861 1.56427 1.36033 1.00790 0.85544 0.78483 0.81284 0.77253 1.20400 1.22609 1.18354 1.23359 0.98743 1.01265 0.95653 1.22581 0.96220 0.87878 0.95076 1.48677 1.52208 1.29201 1.04260 1.20812 0.80065 0.85124 0.82507 1.90725 1.41832 1.29806 1.83592 1.20767 1.05161 1.00410 0.86532 1.19442 0.93572 0.96520 0.95396 1.21340 1.00874 0.94201 0.93700 1.21341 0.94697 1.01501 0.96415 1.18026 0.97451 0.97944 0.84245 1.91488 1.92235 1.84710 1.43672 1.17904 0.84975 0.99677 0.94982 1.91486 1.47748 1.90010 1.82919 1.21127 0.98029 1.01579 0.92573 0.91418 0.92750 0.92503 0.80394 0.93413 0.91637 0.89899 0.88948 0.86878 0.84387 0.83848 0.81708 0.81413 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.11 71.98 0.66 -3.67 16 2 C 0.13 3.90 3.22 45.29 0.15 4.05 16 3 H 0.05 1.78 7.70 -2.38 -0.02 1.76 16 4 C 0.17 5.61 3.11 46.18 0.14 5.76 16 5 H 0.07 2.28 7.83 -2.39 -0.02 2.27 16 6 N -0.75 -32.21 5.06 -317.32 -1.60 -33.82 16 7 C -0.22 -11.81 10.46 84.03 0.88 -10.93 16 8 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 10 N -0.98 -60.84 13.97 21.65 0.30 -60.54 16 11 Si 0.95 44.45 27.74 68.60 1.90 46.36 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.26 -11.21 6.52 99.48 0.65 -10.56 16 15 C -0.15 -3.79 6.77 31.98 0.22 -3.58 16 16 C 0.10 1.64 6.68 86.85 0.58 2.22 16 17 N -0.61 -13.36 3.08 -787.42 -2.42 -15.78 16 18 C 0.52 11.19 7.64 87.66 0.67 11.86 16 19 O -0.58 -17.77 15.11 -3.03 -0.05 -17.82 16 20 C -0.09 -0.94 4.83 29.10 0.14 -0.80 16 21 C -0.05 -0.70 4.37 -19.87 -0.09 -0.79 16 22 C -0.08 -1.09 9.69 22.27 0.22 -0.87 16 23 C -0.12 -1.79 10.02 22.31 0.22 -1.57 16 24 C 0.04 0.88 7.31 22.41 0.16 1.04 16 25 F -0.14 -3.24 17.18 44.97 0.77 -2.46 16 26 C 0.04 0.94 7.31 22.41 0.16 1.10 16 27 F -0.14 -3.41 17.18 44.97 0.77 -2.64 16 28 C -0.11 -1.95 9.68 22.30 0.22 -1.73 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.68 6.93 -2.39 -0.02 1.67 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.36 15.63 5.38 -92.71 -0.50 15.13 16 33 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 0.95 7.47 -2.39 -0.02 0.93 16 38 H 0.14 0.70 8.09 -2.39 -0.02 0.68 16 39 H 0.14 0.61 7.79 -2.39 -0.02 0.59 16 40 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -73.99 358.20 4.96 -69.02 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.49 Total: 18.51 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.79 Total: -0.82 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -3.73 Total: -110.14 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.82 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 1.55 Total: -5.11 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.36 kcal Total: -73.99 4.96 -69.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986761973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.821 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds