Wall clock time and date at job start Tue Mar 31 2020 14:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.98900 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09478 * 2 1 3 5 5 H 1.09001 * 110.87160 * 260.04872 * 4 2 1 6 6 N 1.46498 * 110.72217 * 23.25196 * 4 2 1 7 7 C 1.36943 * 119.99993 * 264.41437 * 6 4 2 8 8 H 1.08003 * 120.00021 * 359.71954 * 7 6 4 9 9 C 1.38815 * 119.99876 * 179.72432 * 7 6 4 10 10 N 1.31614 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99462 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47368 * 60.00161 * 11 9 7 13 13 H 1.48510 * 109.46777 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47591 * 299.99610 * 11 9 7 15 15 C 1.55158 * 102.94154 * 141.61581 * 4 2 1 16 16 C 1.54912 * 101.58071 * 324.49572 * 15 4 2 17 17 N 1.47015 * 109.88300 * 238.90868 * 2 1 3 18 18 C 1.34779 * 125.65457 * 61.60290 * 17 2 1 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00496 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47133 * 179.97438 * 20 18 17 22 22 C 1.38206 * 119.99998 * 100.00472 * 21 20 18 23 23 C 1.38431 * 120.00204 * 179.97438 * 22 21 20 24 24 F 1.35101 * 120.00119 * 179.97438 * 23 22 21 25 25 C 1.38464 * 119.99742 * 359.97438 * 23 22 21 26 26 C 1.38166 * 120.00249 * 359.97438 * 25 23 22 27 27 C 1.38427 * 119.99968 * 279.72336 * 21 20 18 28 28 F 1.35097 * 120.00128 * 0.02562 * 27 21 20 29 29 H 1.08994 * 109.47076 * 293.63664 * 1 2 3 30 30 H 1.08997 * 109.47172 * 53.63979 * 1 2 3 31 31 H 1.09005 * 109.46600 * 173.63480 * 1 2 3 32 32 H 0.97001 * 120.00558 * 84.12849 * 6 4 2 33 33 H 0.96996 * 119.99989 * 180.02562 * 10 9 7 34 34 H 1.08993 * 111.00393 * 82.57163 * 15 4 2 35 35 H 1.09003 * 110.99988 * 206.38729 * 15 4 2 36 36 H 1.08993 * 110.36615 * 155.84743 * 16 15 4 37 37 H 1.08995 * 110.36712 * 278.17558 * 16 15 4 38 38 H 1.08999 * 109.47035 * 300.00343 * 20 18 17 39 39 H 1.09004 * 109.46573 * 59.99917 * 20 18 17 40 40 H 1.08005 * 119.99632 * 359.94538 * 22 21 20 41 41 H 1.08001 * 120.00493 * 180.02562 * 25 23 22 42 42 H 1.08004 * 120.00204 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.3525 -0.0481 2.0222 6 7 1.0473 -1.6855 1.7474 7 6 0.2102 -1.3083 2.7634 8 1 0.2958 -0.3223 3.1957 9 6 -0.7483 -2.1933 3.2377 10 7 -0.8529 -3.3948 2.7107 11 14 -1.8896 -1.6789 4.6241 12 1 -2.6751 -0.4908 4.2037 13 1 -2.8150 -2.7956 4.9436 14 1 -1.0868 -1.3412 5.8268 15 6 3.2877 -1.5141 0.6923 16 6 2.8146 -1.8793 -0.7368 17 7 2.0300 -0.7139 -1.1839 18 6 1.8074 -0.3619 -2.4657 19 8 1.1436 0.6212 -2.7181 20 6 2.3833 -1.1899 -3.5855 21 6 1.9903 -0.5870 -4.9095 22 6 2.8886 0.2009 -5.6039 23 6 2.5278 0.7543 -6.8204 24 9 3.4058 1.5250 -7.4990 25 6 1.2670 0.5180 -7.3417 26 6 0.3692 -0.2705 -6.6480 27 6 0.7315 -0.8272 -5.4329 28 9 -0.1448 -1.6016 -4.7566 29 1 -0.3633 0.4120 0.9414 30 1 -0.3633 0.6092 -0.8276 31 1 -0.3633 -1.0214 -0.1139 32 1 0.9703 -2.5711 1.3591 33 1 -1.5229 -4.0130 3.0419 34 1 4.1654 -0.8686 0.6604 35 1 3.4857 -2.4105 1.2800 36 1 3.6717 -2.0336 -1.3923 37 1 2.1888 -2.7713 -0.7129 38 1 3.4700 -1.2079 -3.5022 39 1 1.9971 -2.2072 -3.5208 40 1 3.8721 0.3853 -5.1972 41 1 0.9855 0.9494 -8.2910 42 1 -0.6141 -0.4552 -7.0548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986771555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:09 Heat of formation + Delta-G solvation = -82.216404 kcal Electronic energy + Delta-G solvation = -27590.793589 eV Core-core repulsion = 23400.194647 eV Total energy + Delta-G solvation = -4190.598942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.14055 -48.99334 -40.10107 -38.97810 -37.35167 -34.02106 -33.21634 -31.53455 -30.73415 -30.36070 -29.11240 -27.51100 -25.24472 -23.49380 -23.28971 -22.82310 -21.82169 -19.87325 -18.52882 -17.78604 -17.55379 -17.39078 -17.33694 -16.76339 -15.98919 -15.81213 -15.41828 -14.96453 -14.67530 -14.53021 -14.40184 -14.04752 -13.74428 -13.54340 -13.51360 -13.20593 -12.92311 -12.78000 -12.60383 -12.46226 -12.01855 -11.95806 -11.47645 -11.35468 -11.26066 -10.88960 -10.85191 -10.61845 -10.51949 -10.19412 -10.08788 -9.72649 -9.63081 -9.27404 -8.97017 -8.69860 -8.24968 -7.05903 -5.83463 -3.12815 0.72924 0.78571 2.86725 3.02201 3.40168 3.41761 3.46351 3.46542 3.90026 4.02020 4.22902 4.40014 4.53553 4.68112 4.72768 4.88461 4.95748 5.07327 5.26020 5.28594 5.37073 5.47913 5.55472 5.67532 5.70463 5.73304 5.75208 5.83044 5.85552 5.90130 6.08285 6.22584 6.28054 6.44240 6.54632 6.56583 6.65321 6.84207 7.04579 7.35103 7.64013 7.89153 8.33873 8.44789 9.46089 9.99722 10.34872 11.38541 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.002931 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.621953 B = 9549.138361 C =10064.423356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.109 3.891 3 H 0.059 0.941 4 C 0.171 3.829 5 H 0.074 0.926 6 N -0.709 5.709 7 C -0.241 4.241 8 H 0.071 0.929 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.145 4.145 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.528 3.472 19 O -0.539 6.539 20 C -0.102 4.102 21 C -0.066 4.066 22 C -0.115 4.115 23 C 0.087 3.913 24 F -0.137 7.137 25 C -0.127 4.127 26 C -0.125 4.125 27 C 0.110 3.890 28 F -0.128 7.128 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.014 3.637 -18.057 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 H 0.077 0.923 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.372 4.372 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.184 4.184 16 C -0.023 4.023 17 N -0.337 5.337 18 C 0.315 3.685 19 O -0.416 6.416 20 C -0.142 4.142 21 C -0.068 4.068 22 C -0.134 4.134 23 C 0.067 3.933 24 F -0.116 7.116 25 C -0.146 4.146 26 C -0.144 4.144 27 C 0.091 3.909 28 F -0.106 7.106 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.219 0.781 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.525 4.228 -18.079 20.867 hybrid contribution -0.752 -0.120 0.599 0.969 sum 8.773 4.108 -17.479 19.984 Atomic orbital electron populations 1.21757 0.93706 1.02580 1.00950 1.22745 0.96223 0.95331 0.85359 0.92310 1.21248 0.88492 0.92207 0.92265 0.90754 1.42321 1.37559 1.14039 1.40850 1.19142 1.10080 0.98515 1.09463 0.91114 1.24718 0.99660 0.96151 0.99937 1.69634 1.37266 1.06382 1.44484 0.86303 0.80686 0.77300 0.82098 1.21197 1.21738 1.21244 1.23146 0.98584 1.01833 0.94885 1.22330 0.94533 0.89241 0.96171 1.48607 1.51800 1.28325 1.04974 1.19828 0.80935 0.85366 0.82339 1.90700 1.39906 1.27827 1.83182 1.20639 1.03210 1.00651 0.89694 1.19198 0.92691 0.98874 0.96029 1.20840 1.01027 0.97788 0.93729 1.17557 0.88360 0.95183 0.92177 1.91509 1.68014 1.72837 1.79241 1.20946 0.92031 1.00126 1.01472 1.20966 1.01074 0.98413 0.93928 1.17504 0.87496 0.94263 0.91647 1.91550 1.67674 1.71982 1.79402 0.91301 0.94326 0.91755 0.78078 0.93386 0.91055 0.89462 0.91517 0.91024 0.87441 0.87316 0.83841 0.83826 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.02 37.16 0.30 -2.48 16 2 C 0.11 1.98 3.44 -66.96 -0.23 1.75 16 3 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.17 3.09 3.52 -66.10 -0.23 2.86 16 5 H 0.07 1.34 8.06 -51.93 -0.42 0.93 16 6 N -0.71 -16.14 3.91 -51.65 -0.20 -16.34 16 7 C -0.24 -6.22 8.40 -15.06 -0.13 -6.35 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -26.87 13.06 55.49 0.72 -26.15 16 11 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C -0.15 -2.04 6.69 -24.58 -0.16 -2.20 16 16 C 0.10 1.33 6.62 -2.53 -0.02 1.32 16 17 N -0.60 -9.66 3.07 -163.02 -0.50 -10.16 16 18 C 0.53 8.52 7.63 -10.99 -0.08 8.44 16 19 O -0.54 -10.66 15.10 5.55 0.08 -10.57 16 20 C -0.10 -1.19 4.56 -29.04 -0.13 -1.32 16 21 C -0.07 -0.80 4.42 -104.57 -0.46 -1.26 16 22 C -0.11 -1.22 9.65 -39.52 -0.38 -1.60 16 23 C 0.09 0.91 7.30 -39.43 -0.29 0.62 16 24 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 25 C -0.13 -1.18 10.02 -39.52 -0.40 -1.57 16 26 C -0.13 -1.27 10.02 -39.52 -0.40 -1.67 16 27 C 0.11 1.41 7.14 -39.42 -0.28 1.12 16 28 F -0.13 -1.88 16.65 2.25 0.04 -1.84 16 29 H 0.07 1.52 7.11 -51.93 -0.37 1.15 16 30 H 0.04 0.82 7.08 -51.93 -0.37 0.45 16 31 H 0.06 1.51 7.64 -51.93 -0.40 1.11 16 32 H 0.39 9.42 7.84 -40.82 -0.32 9.10 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.11 0.91 7.71 -51.93 -0.40 0.51 16 39 H 0.11 1.18 7.94 -51.93 -0.41 0.77 16 40 H 0.14 1.23 8.04 -52.48 -0.42 0.81 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -31.37 356.58 -8.03 -39.40 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.58 Total: 7.62 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.99 Total: -2.66 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.02 Total: -52.65 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.37 -8.03 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986771555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.815 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds