Wall clock time and date at job start Tue Mar 31 2020 14:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.98900 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09478 * 2 1 3 5 5 H 1.09001 * 110.87160 * 260.04872 * 4 2 1 6 6 N 1.46498 * 110.72217 * 23.25196 * 4 2 1 7 7 C 1.36943 * 119.99993 * 264.41437 * 6 4 2 8 8 H 1.08003 * 120.00021 * 359.71954 * 7 6 4 9 9 C 1.38815 * 119.99876 * 179.72432 * 7 6 4 10 10 N 1.31614 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99462 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47368 * 60.00161 * 11 9 7 13 13 H 1.48510 * 109.46777 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47591 * 299.99610 * 11 9 7 15 15 C 1.55158 * 102.94154 * 141.61581 * 4 2 1 16 16 C 1.54912 * 101.58071 * 324.49572 * 15 4 2 17 17 N 1.47015 * 109.88300 * 238.90868 * 2 1 3 18 18 C 1.34779 * 125.65457 * 61.60290 * 17 2 1 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00496 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47133 * 179.97438 * 20 18 17 22 22 C 1.38206 * 119.99998 * 100.00472 * 21 20 18 23 23 C 1.38431 * 120.00204 * 179.97438 * 22 21 20 24 24 F 1.35101 * 120.00119 * 179.97438 * 23 22 21 25 25 C 1.38464 * 119.99742 * 359.97438 * 23 22 21 26 26 C 1.38166 * 120.00249 * 359.97438 * 25 23 22 27 27 C 1.38427 * 119.99968 * 279.72336 * 21 20 18 28 28 F 1.35097 * 120.00128 * 0.02562 * 27 21 20 29 29 H 1.08994 * 109.47076 * 293.63664 * 1 2 3 30 30 H 1.08997 * 109.47172 * 53.63979 * 1 2 3 31 31 H 1.09005 * 109.46600 * 173.63480 * 1 2 3 32 32 H 0.97001 * 120.00558 * 84.12849 * 6 4 2 33 33 H 0.96996 * 119.99989 * 180.02562 * 10 9 7 34 34 H 1.08993 * 111.00393 * 82.57163 * 15 4 2 35 35 H 1.09003 * 110.99988 * 206.38729 * 15 4 2 36 36 H 1.08993 * 110.36615 * 155.84743 * 16 15 4 37 37 H 1.08995 * 110.36712 * 278.17558 * 16 15 4 38 38 H 1.08999 * 109.47035 * 300.00343 * 20 18 17 39 39 H 1.09004 * 109.46573 * 59.99917 * 20 18 17 40 40 H 1.08005 * 119.99632 * 359.94538 * 22 21 20 41 41 H 1.08001 * 120.00493 * 180.02562 * 25 23 22 42 42 H 1.08004 * 120.00204 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.3525 -0.0481 2.0222 6 7 1.0473 -1.6855 1.7474 7 6 0.2102 -1.3083 2.7634 8 1 0.2958 -0.3223 3.1957 9 6 -0.7483 -2.1933 3.2377 10 7 -0.8529 -3.3948 2.7107 11 14 -1.8896 -1.6789 4.6241 12 1 -2.6751 -0.4908 4.2037 13 1 -2.8150 -2.7956 4.9436 14 1 -1.0868 -1.3412 5.8268 15 6 3.2877 -1.5141 0.6923 16 6 2.8146 -1.8793 -0.7368 17 7 2.0300 -0.7139 -1.1839 18 6 1.8074 -0.3619 -2.4657 19 8 1.1436 0.6212 -2.7181 20 6 2.3833 -1.1899 -3.5855 21 6 1.9903 -0.5870 -4.9095 22 6 2.8886 0.2009 -5.6039 23 6 2.5278 0.7543 -6.8204 24 9 3.4058 1.5250 -7.4990 25 6 1.2670 0.5180 -7.3417 26 6 0.3692 -0.2705 -6.6480 27 6 0.7315 -0.8272 -5.4329 28 9 -0.1448 -1.6016 -4.7566 29 1 -0.3633 0.4120 0.9414 30 1 -0.3633 0.6092 -0.8276 31 1 -0.3633 -1.0214 -0.1139 32 1 0.9703 -2.5711 1.3591 33 1 -1.5229 -4.0130 3.0419 34 1 4.1654 -0.8686 0.6604 35 1 3.4857 -2.4105 1.2800 36 1 3.6717 -2.0336 -1.3923 37 1 2.1888 -2.7713 -0.7129 38 1 3.4700 -1.2079 -3.5022 39 1 1.9971 -2.2072 -3.5208 40 1 3.8721 0.3853 -5.1972 41 1 0.9855 0.9494 -8.2910 42 1 -0.6141 -0.4552 -7.0548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986771555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:08 Heat of formation + Delta-G solvation = -100.253408 kcal Electronic energy + Delta-G solvation = -27591.575732 eV Core-core repulsion = 23400.194647 eV Total energy + Delta-G solvation = -4191.381085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.99754 -49.94302 -41.33083 -39.92653 -38.67499 -35.74243 -34.19666 -33.18459 -32.13149 -31.23685 -30.64108 -28.56311 -26.81547 -25.28374 -24.26577 -23.86210 -22.85017 -21.22386 -19.83789 -19.35412 -18.65948 -18.31732 -18.20581 -18.01529 -17.28250 -16.81819 -16.45038 -16.36979 -15.99599 -15.57657 -15.39815 -15.29763 -15.27797 -15.05750 -14.59311 -14.42673 -14.14939 -13.93197 -13.81404 -13.65752 -13.17404 -13.03919 -12.93357 -12.80650 -12.73486 -12.39387 -12.28749 -12.24402 -12.06744 -11.84178 -11.67990 -11.49102 -10.98020 -10.85863 -10.14169 -9.58233 -9.55887 -8.98704 -7.91419 -5.17972 -0.11068 0.00067 1.48236 1.49939 1.54939 1.64473 2.01165 2.40638 2.57625 3.09295 3.19654 3.38934 3.41645 3.59567 3.66572 3.75674 3.91405 3.98491 4.09740 4.13235 4.27129 4.35043 4.42581 4.44957 4.55748 4.63725 4.70747 4.80344 4.85026 4.92148 4.96802 5.00738 5.01758 5.09334 5.14136 5.27288 5.33177 5.49614 5.52296 5.58805 5.75617 6.30159 6.65494 7.19660 7.38222 8.11820 8.35114 9.31340 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.002931 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.621953 B = 9549.138361 C =10064.423356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.114 3.886 3 H 0.065 0.935 4 C 0.161 3.839 5 H 0.077 0.923 6 N -0.717 5.717 7 C -0.227 4.227 8 H 0.075 0.925 9 C -0.070 4.070 10 N -0.966 5.966 11 Si 0.960 3.040 12 H -0.285 1.285 13 H -0.300 1.300 14 H -0.276 1.276 15 C -0.130 4.130 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.521 3.479 19 O -0.582 6.582 20 C -0.093 4.093 21 C -0.081 4.081 22 C -0.115 4.115 23 C 0.079 3.921 24 F -0.138 7.138 25 C -0.119 4.119 26 C -0.126 4.126 27 C 0.079 3.921 28 F -0.148 7.148 29 H 0.051 0.949 30 H 0.028 0.972 31 H 0.032 0.968 32 H 0.375 0.625 33 H 0.248 0.752 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.057 0.943 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 4.317 -19.292 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.008 3.992 3 H 0.083 0.917 4 C 0.051 3.949 5 H 0.095 0.905 6 N -0.355 5.355 7 C -0.359 4.359 8 H 0.093 0.907 9 C -0.263 4.263 10 N -0.616 5.616 11 Si 0.791 3.209 12 H -0.212 1.212 13 H -0.227 1.227 14 H -0.202 1.202 15 C -0.169 4.169 16 C -0.022 4.022 17 N -0.338 5.338 18 C 0.311 3.689 19 O -0.463 6.463 20 C -0.132 4.132 21 C -0.083 4.083 22 C -0.133 4.133 23 C 0.059 3.941 24 F -0.117 7.117 25 C -0.138 4.138 26 C -0.144 4.144 27 C 0.059 3.941 28 F -0.127 7.127 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.207 0.793 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.166 0.834 39 H 0.134 0.866 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.952 4.932 -19.322 23.249 hybrid contribution -1.457 -0.217 0.882 1.717 sum 10.495 4.715 -18.440 21.735 Atomic orbital electron populations 1.21553 0.96355 0.99992 0.99502 1.22457 0.93877 0.96083 0.86791 0.91719 1.21483 0.89144 0.92113 0.92198 0.90478 1.42427 1.38311 1.14367 1.40365 1.19470 1.09387 0.98110 1.08937 0.90716 1.25376 1.01737 0.96546 1.02603 1.69773 1.38214 1.07400 1.46254 0.85407 0.78986 0.76402 0.80151 1.21198 1.22669 1.20246 1.23079 0.97409 1.01756 0.94675 1.22507 0.95478 0.87458 0.96771 1.48665 1.51892 1.28759 1.04513 1.20654 0.80130 0.85146 0.82985 1.90676 1.41776 1.29969 1.83840 1.20665 1.05345 0.99717 0.87514 1.19312 0.92802 0.99708 0.96429 1.21059 1.01684 0.96947 0.93638 1.17746 0.88776 0.95192 0.92341 1.91510 1.68098 1.72862 1.79236 1.21263 0.91282 0.99045 1.02194 1.21226 1.02156 0.97900 0.93149 1.17968 0.87939 0.95331 0.92844 1.91494 1.68416 1.72740 1.80017 0.92970 0.95306 0.94847 0.79253 0.94282 0.87764 0.89445 0.86638 0.92480 0.83397 0.86618 0.81737 0.81016 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.02 71.98 0.58 -4.44 16 2 C 0.11 4.09 3.44 45.34 0.16 4.24 16 3 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.16 5.66 3.52 46.18 0.16 5.82 16 5 H 0.08 2.67 8.06 -2.39 -0.02 2.65 16 6 N -0.72 -32.80 3.91 -317.33 -1.24 -34.04 16 7 C -0.23 -11.81 8.40 84.03 0.71 -11.11 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 10 N -0.97 -57.28 13.06 21.65 0.28 -57.00 16 11 Si 0.96 45.51 29.55 68.60 2.03 47.54 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 15 C -0.13 -3.26 6.69 31.99 0.21 -3.05 16 16 C 0.10 2.36 6.62 86.86 0.58 2.94 16 17 N -0.61 -18.40 3.07 -788.07 -2.42 -20.81 16 18 C 0.52 16.14 7.63 87.66 0.67 16.81 16 19 O -0.58 -22.99 15.10 -3.05 -0.05 -23.03 16 20 C -0.09 -1.95 4.56 29.10 0.13 -1.81 16 21 C -0.08 -1.82 4.42 -19.83 -0.09 -1.91 16 22 C -0.11 -2.16 9.65 22.31 0.22 -1.94 16 23 C 0.08 1.47 7.30 22.37 0.16 1.63 16 24 F -0.14 -2.63 17.27 44.97 0.78 -1.85 16 25 C -0.12 -1.94 10.02 22.31 0.22 -1.72 16 26 C -0.13 -2.40 10.02 22.31 0.22 -2.17 16 27 C 0.08 1.96 7.14 22.37 0.16 2.12 16 28 F -0.15 -4.44 16.65 44.97 0.75 -3.69 16 29 H 0.05 2.37 7.11 -2.39 -0.02 2.35 16 30 H 0.03 1.26 7.08 -2.39 -0.02 1.24 16 31 H 0.03 1.62 7.64 -2.38 -0.02 1.60 16 32 H 0.38 18.64 7.84 -92.71 -0.73 17.91 16 33 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.12 1.67 7.48 -2.39 -0.02 1.66 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.15 1.82 7.71 -2.39 -0.02 1.80 16 39 H 0.12 2.28 7.94 -2.39 -0.02 2.26 16 40 H 0.17 2.27 8.04 -2.91 -0.02 2.24 16 41 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -70.94 356.58 5.02 -65.93 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.33 Total: 24.97 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.56 Total: 1.98 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -3.37 Total: -111.85 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 1.53 Total: -5.54 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.94 5.02 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986771555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.328 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds