Wall clock time and date at job start Tue Mar 31 2020 14:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00026 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00308 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47478 * 89.99397 * 11 9 7 13 13 H 1.48501 * 109.47253 * 209.99782 * 11 9 7 14 14 H 1.48506 * 109.47089 * 329.99449 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.38216 * 119.99882 * 264.72428 * 21 20 18 23 23 C 1.38433 * 119.99742 * 179.81481 * 22 21 20 24 24 F 1.35096 * 120.00055 * 180.21178 * 23 22 21 25 25 C 1.38472 * 119.99887 * 0.42087 * 23 22 21 26 26 C 1.38164 * 120.00315 * 359.83497 * 25 23 22 27 27 C 1.38426 * 120.00236 * 85.00464 * 21 20 18 28 28 F 1.35101 * 119.99871 * 359.95305 * 27 21 20 29 29 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 32 32 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 33 33 H 0.96999 * 120.00636 * 180.02562 * 10 9 7 34 34 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 35 35 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 36 36 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 37 37 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 38 38 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 39 39 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 40 40 H 1.07994 * 119.99715 * 0.02562 * 22 21 20 41 41 H 1.08001 * 119.99565 * 179.81766 * 25 23 22 42 42 H 1.07998 * 119.99941 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 2.8406 0.3340 5.8510 11 14 3.3454 2.4454 4.1284 12 1 2.1509 3.3277 4.1344 13 1 4.3376 2.9487 5.1121 14 1 3.9510 2.4415 2.7724 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8793 -1.0663 -5.5804 23 6 0.5168 -0.5111 -6.7955 24 9 -0.5721 -0.9704 -7.4501 25 6 1.2727 0.5122 -7.3422 26 6 2.3869 0.9814 -6.6733 27 6 2.7470 0.4290 -5.4557 28 9 3.8362 0.8881 -4.8013 29 1 -0.3633 0.4979 0.8990 30 1 -0.3633 -1.0275 -0.0183 31 1 -0.3634 0.5296 -0.8807 32 1 2.7188 1.1016 2.0480 33 1 3.1058 0.9610 6.5419 34 1 4.1655 -0.8679 0.6615 35 1 3.4857 -2.4089 1.2832 36 1 3.6716 -2.0356 -1.3896 37 1 2.1903 -2.7735 -0.7093 38 1 3.4698 -1.2127 -3.5008 39 1 1.9971 -2.2122 -3.5178 40 1 0.2918 -1.8667 -5.1556 41 1 0.9915 0.9434 -8.2916 42 1 2.9766 1.7793 -7.0999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986771556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:13 Heat of formation + Delta-G solvation = -82.107866 kcal Electronic energy + Delta-G solvation = -27226.859374 eV Core-core repulsion = 23036.265139 eV Total energy + Delta-G solvation = -4190.594235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.23351 -49.17807 -40.31780 -39.11390 -37.49844 -34.31633 -33.40041 -31.75479 -31.05314 -30.50933 -29.78174 -27.82095 -25.40836 -23.58748 -23.06481 -22.70933 -21.91963 -20.31544 -19.03591 -17.94136 -17.65944 -17.56830 -17.46196 -17.07287 -16.24236 -15.98606 -15.57608 -15.17636 -14.82660 -14.69718 -14.54539 -14.13376 -14.01386 -13.77842 -13.45838 -13.32759 -12.99624 -12.82452 -12.76525 -12.44775 -12.19696 -12.14675 -12.01293 -11.80483 -11.42416 -11.35443 -11.22861 -10.92598 -10.68082 -10.40740 -10.10550 -9.88007 -9.66420 -9.42710 -9.00921 -8.83421 -8.54589 -7.38028 -5.85087 -3.22544 0.59737 0.66483 2.63016 2.82992 3.17517 3.34129 3.37753 3.42532 3.78082 3.86764 4.09343 4.26567 4.50366 4.52668 4.57748 4.74693 4.87061 4.93764 5.07423 5.08777 5.16868 5.32218 5.36975 5.47689 5.54519 5.56783 5.62444 5.63284 5.69949 5.75959 5.77124 5.84798 5.96217 6.15539 6.30591 6.42325 6.47127 6.48796 6.56794 6.75466 7.60472 7.88632 8.18595 8.33347 9.09854 9.82571 10.00690 11.32581 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002748 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.634917 B =10187.514405 C =10485.588794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.074 0.926 4 C 0.182 3.818 5 H 0.077 0.923 6 N -0.738 5.738 7 C -0.249 4.249 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.156 4.156 16 C 0.096 3.904 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.535 6.535 20 C -0.101 4.101 21 C -0.067 4.067 22 C -0.113 4.113 23 C 0.089 3.911 24 F -0.136 7.136 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.106 3.894 28 F -0.131 7.131 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 -5.188 -26.698 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.197 4.197 16 C -0.027 4.027 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.412 6.412 20 C -0.141 4.141 21 C -0.069 4.069 22 C -0.132 4.132 23 C 0.070 3.930 24 F -0.115 7.115 25 C -0.145 4.145 26 C -0.143 4.143 27 C 0.086 3.914 28 F -0.109 7.109 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.265 -4.749 -26.639 27.088 hybrid contribution 0.511 1.234 -0.146 1.344 sum -0.755 -3.515 -26.785 27.025 Atomic orbital electron populations 1.22053 0.94614 1.01879 1.02777 1.21971 0.94721 0.96704 0.84635 0.90841 1.21217 0.93910 0.91297 0.86545 0.90516 1.42706 1.80730 1.11183 1.03362 1.19025 1.39001 0.99089 0.80717 0.88976 1.24657 1.01184 0.97784 0.95066 1.69690 1.53814 1.35252 0.98931 0.86598 0.78517 0.86198 0.77495 1.20898 1.21617 1.20289 1.23543 1.01023 1.02050 0.93082 1.22436 0.94694 0.88338 0.97250 1.48546 1.52182 1.28743 1.04806 1.19892 0.80827 0.85362 0.82182 1.90715 1.39920 1.27475 1.83126 1.20617 1.03576 1.00378 0.89511 1.19164 0.95373 0.96353 0.95998 1.20856 0.96826 1.01640 0.93830 1.17573 0.86225 0.96741 0.92451 1.91519 1.51642 1.87898 1.80394 1.20973 0.95190 0.96835 1.01503 1.20958 0.98065 1.01265 0.93992 1.17488 0.86154 0.95614 0.92094 1.91527 1.51201 1.87614 1.80563 0.91075 0.92824 0.91957 0.80353 0.92909 0.90738 0.89982 0.91138 0.91292 0.87276 0.87121 0.83747 0.83733 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.09 37.16 0.34 -2.10 16 2 C 0.12 2.03 3.21 -66.95 -0.22 1.82 16 3 H 0.07 1.35 7.71 -51.93 -0.40 0.95 16 4 C 0.18 3.23 3.14 -66.10 -0.21 3.02 16 5 H 0.08 1.39 7.80 -51.93 -0.41 0.98 16 6 N -0.74 -16.59 5.03 -51.65 -0.26 -16.85 16 7 C -0.25 -6.67 10.44 -15.06 -0.16 -6.83 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -28.42 13.97 55.49 0.78 -27.65 16 11 Si 0.88 21.73 27.74 -169.99 -4.71 17.01 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 15 C -0.16 -2.31 6.77 -24.58 -0.17 -2.48 16 16 C 0.10 1.09 6.69 -2.53 -0.02 1.08 16 17 N -0.61 -8.50 3.07 -163.01 -0.50 -9.00 16 18 C 0.53 7.43 7.64 -10.99 -0.08 7.35 16 19 O -0.54 -9.45 15.08 5.55 0.08 -9.37 16 20 C -0.10 -0.99 4.61 -29.04 -0.13 -1.12 16 21 C -0.07 -0.71 4.38 -104.56 -0.46 -1.16 16 22 C -0.11 -1.07 9.66 -39.52 -0.38 -1.45 16 23 C 0.09 0.84 7.30 -39.42 -0.29 0.56 16 24 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 25 C -0.13 -1.02 10.02 -39.52 -0.40 -1.42 16 26 C -0.12 -1.08 10.02 -39.52 -0.40 -1.47 16 27 C 0.11 1.15 7.24 -39.43 -0.29 0.87 16 28 F -0.13 -1.60 16.56 2.25 0.04 -1.56 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 32 H 0.36 8.24 5.42 -40.82 -0.22 8.02 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.93 7.49 -51.93 -0.39 0.55 16 39 H 0.11 0.76 8.05 -51.93 -0.42 0.34 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -32.70 357.28 -7.65 -40.35 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.55 Total: 6.15 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.94 Total: -3.17 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.02 Total: -53.50 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.70 -7.65 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986771556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.755 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds