Wall clock time and date at job start Tue Mar 31 2020 14:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 H 1.09003 * 110.67447 * 337.04882 * 4 2 1 6 6 N 1.46499 * 110.85219 * 100.19899 * 4 2 1 7 7 C 1.36934 * 120.00324 * 200.14102 * 6 4 2 8 8 H 1.08001 * 120.00178 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00193 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00311 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00063 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47299 * 89.99493 * 11 9 7 13 13 H 1.48502 * 109.47090 * 209.99851 * 11 9 7 14 14 H 1.48502 * 109.46780 * 329.99682 * 11 9 7 15 15 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 16 16 C 1.54918 * 101.58012 * 35.30827 * 15 4 2 17 17 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 18 18 C 1.34780 * 125.64445 * 298.39549 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 18 17 22 22 C 1.38200 * 120.00092 * 99.99774 * 21 20 18 23 23 C 1.38429 * 120.00378 * 179.97438 * 22 21 20 24 24 F 1.35095 * 120.00240 * 179.97438 * 23 22 21 25 25 C 1.38474 * 119.99659 * 0.02562 * 23 22 21 26 26 C 1.38166 * 119.99999 * 359.95492 * 25 23 22 27 27 C 1.38428 * 119.99851 * 279.72147 * 21 20 18 28 28 F 1.35096 * 120.00078 * 0.02734 * 27 21 20 29 29 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 30 30 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 32 32 H 0.96999 * 119.99800 * 20.14306 * 6 4 2 33 33 H 0.96996 * 119.99883 * 180.02562 * 10 9 7 34 34 H 1.08998 * 111.00676 * 277.23890 * 15 4 2 35 35 H 1.09003 * 111.04375 * 153.39206 * 15 4 2 36 36 H 1.09003 * 110.36670 * 204.15269 * 16 15 4 37 37 H 1.09001 * 110.46005 * 81.87572 * 16 15 4 38 38 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 39 39 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 40 40 H 1.08003 * 120.00202 * 359.96121 * 22 21 20 41 41 H 1.08003 * 120.00028 * 179.97438 * 25 23 22 42 42 H 1.08007 * 119.99834 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3066 -1.4406 -1.6225 6 7 2.4636 0.1966 -2.2863 7 6 2.5655 -0.2215 -3.5862 8 1 2.3461 -1.2475 -3.8422 9 6 2.9498 0.6736 -4.5752 10 7 3.0472 0.2718 -5.8248 11 14 3.3286 2.4484 -4.1326 12 1 4.7702 2.5791 -3.8015 13 1 3.0040 3.3262 -5.2856 14 1 2.5127 2.8508 -2.9589 15 6 3.2863 -1.5184 -0.6914 16 6 2.8098 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.1474 0.6239 2.7180 20 6 2.3783 -1.1932 3.5856 21 6 1.9872 -0.5889 4.9096 22 6 0.9321 -1.1200 5.6269 23 6 0.5732 -0.5653 6.8433 24 9 -0.4585 -1.0842 7.5443 25 6 1.2711 0.5222 7.3411 26 6 2.3262 1.0530 6.6242 27 6 2.6885 0.4947 5.4099 28 9 3.7231 1.0107 4.7111 29 1 -0.3634 0.5195 0.8867 30 1 -0.3634 0.5082 -0.8933 31 1 -0.3634 -1.0276 0.0064 32 1 2.6604 1.1182 -2.0564 33 1 3.3161 0.8972 -6.5157 34 1 4.1669 -0.8769 -0.6578 35 1 3.4813 -2.4157 -1.2787 36 1 3.6655 -2.0412 1.3934 37 1 2.1805 -2.7722 0.7135 38 1 1.9877 -2.2087 3.5198 39 1 3.4650 -1.2158 3.5037 40 1 0.3874 -1.9678 5.2384 41 1 0.9908 0.9553 8.2900 42 1 2.8708 1.9009 7.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986771558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:20 Heat of formation + Delta-G solvation = -81.846827 kcal Electronic energy + Delta-G solvation = -27240.687911 eV Core-core repulsion = 23050.104995 eV Total energy + Delta-G solvation = -4190.582916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.23707 -49.15869 -40.31909 -39.11529 -37.50002 -34.31413 -33.40229 -31.75344 -31.05824 -30.50658 -29.77588 -27.81899 -25.41335 -23.57299 -23.07632 -22.73143 -21.91873 -20.28370 -19.05400 -17.92672 -17.63984 -17.55940 -17.46184 -17.07862 -16.23613 -15.98456 -15.56514 -15.18402 -14.82915 -14.69590 -14.53910 -14.13793 -14.00673 -13.77267 -13.45941 -13.32230 -12.99908 -12.83307 -12.75326 -12.48797 -12.22940 -12.13460 -11.98289 -11.81212 -11.42356 -11.34117 -11.24009 -10.93094 -10.67995 -10.39737 -10.09718 -9.88200 -9.66158 -9.42552 -9.00272 -8.82880 -8.54880 -7.37454 -5.84748 -3.22163 0.60040 0.66547 2.63005 2.82966 3.17189 3.34262 3.38163 3.42731 3.78113 3.87855 4.09409 4.26288 4.50309 4.53014 4.57754 4.74955 4.87170 4.93695 5.06269 5.08704 5.17981 5.31934 5.36969 5.46862 5.54190 5.56946 5.62164 5.62365 5.70065 5.76329 5.77487 5.84346 5.95539 6.16178 6.30062 6.42482 6.47042 6.48610 6.55845 6.76891 7.60120 7.89061 8.18383 8.33726 9.10343 9.83057 10.01221 11.32930 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.002748 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.022356 B =10185.803498 C =10507.248645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.074 0.926 4 C 0.181 3.819 5 H 0.073 0.927 6 N -0.739 5.739 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.154 4.154 16 C 0.096 3.904 17 N -0.609 5.609 18 C 0.530 3.470 19 O -0.535 6.535 20 C -0.101 4.101 21 C -0.068 4.068 22 C -0.114 4.114 23 C 0.089 3.911 24 F -0.136 7.136 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.109 3.891 28 F -0.130 7.130 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.363 0.637 33 H 0.261 0.739 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 -4.973 26.661 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.091 0.909 6 N -0.381 5.381 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.195 4.195 16 C -0.027 4.027 17 N -0.343 5.343 18 C 0.317 3.683 19 O -0.412 6.412 20 C -0.140 4.140 21 C -0.070 4.070 22 C -0.133 4.133 23 C 0.069 3.931 24 F -0.115 7.115 25 C -0.145 4.145 26 C -0.143 4.143 27 C 0.089 3.911 28 F -0.108 7.108 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.196 0.804 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.840 -4.538 26.608 27.054 hybrid contribution 0.403 1.254 0.126 1.324 sum -1.437 -3.283 26.733 26.973 Atomic orbital electron populations 1.22053 0.94612 1.01906 1.02764 1.21907 0.94658 0.96707 0.84565 0.90813 1.21211 0.93889 0.91328 0.86551 0.90884 1.42702 1.82417 1.08370 1.04643 1.19009 1.39579 0.97367 0.81785 0.88988 1.24658 1.01272 0.97626 0.95152 1.69692 1.53591 1.34736 0.99692 0.86596 0.78396 0.86389 0.77444 1.20988 1.21599 1.20219 1.23522 1.00976 1.02038 0.92987 1.22451 0.94761 0.88213 0.97317 1.48544 1.52343 1.28603 1.04792 1.19890 0.80766 0.85402 0.82194 1.90714 1.40047 1.27306 1.83161 1.20617 1.03573 1.00346 0.89499 1.19168 0.96027 0.95764 0.96035 1.20857 0.97193 1.01691 0.93558 1.17568 0.88120 0.95590 0.91804 1.91517 1.55955 1.85950 1.78048 1.20974 0.96056 0.95964 1.01485 1.20965 0.98352 1.01251 0.93748 1.17484 0.87778 0.94379 0.91431 1.91530 1.55258 1.85745 1.78298 0.91912 0.91143 0.92778 0.80367 0.92918 0.90637 0.89985 0.91111 0.91318 0.87148 0.87248 0.83731 0.83741 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.11 37.16 0.34 -2.09 16 2 C 0.13 2.06 3.21 -66.95 -0.21 1.85 16 3 H 0.07 1.36 7.69 -51.93 -0.40 0.96 16 4 C 0.18 3.23 3.12 -66.10 -0.21 3.03 16 5 H 0.07 1.32 7.83 -51.93 -0.41 0.92 16 6 N -0.74 -16.64 5.06 -51.65 -0.26 -16.90 16 7 C -0.25 -6.65 10.46 -15.06 -0.16 -6.81 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 11 Si 0.88 21.75 27.74 -169.99 -4.71 17.03 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 15 C -0.15 -2.30 6.77 -24.58 -0.17 -2.47 16 16 C 0.10 1.09 6.69 -2.53 -0.02 1.07 16 17 N -0.61 -8.50 3.06 -163.01 -0.50 -9.00 16 18 C 0.53 7.43 7.63 -10.98 -0.08 7.35 16 19 O -0.54 -9.44 15.00 5.56 0.08 -9.36 16 20 C -0.10 -0.98 4.56 -29.03 -0.13 -1.11 16 21 C -0.07 -0.71 4.42 -104.56 -0.46 -1.18 16 22 C -0.11 -1.07 9.65 -39.52 -0.38 -1.45 16 23 C 0.09 0.83 7.30 -39.42 -0.29 0.54 16 24 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 25 C -0.13 -1.02 10.02 -39.52 -0.40 -1.42 16 26 C -0.12 -1.09 10.02 -39.52 -0.40 -1.49 16 27 C 0.11 1.20 7.14 -39.42 -0.28 0.92 16 28 F -0.13 -1.63 16.65 2.25 0.04 -1.59 16 29 H 0.06 1.03 6.89 -51.93 -0.36 0.67 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.36 8.25 5.38 -40.82 -0.22 8.03 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.76 8.01 -51.93 -0.42 0.34 16 39 H 0.11 0.93 7.64 -51.93 -0.40 0.53 16 40 H 0.14 1.08 8.04 -52.48 -0.42 0.65 16 41 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -32.76 357.22 -7.65 -40.41 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.56 Total: 6.08 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.94 Total: -3.09 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.01 Total: -53.57 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.76 -7.65 -40.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986771558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.437 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds