Wall clock time and date at job start Tue Mar 31 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99601 * 2 1 4 4 C 1.54327 * 109.98984 * 238.95900 * 2 1 3 5 5 H 1.09003 * 110.67447 * 337.04882 * 4 2 1 6 6 N 1.46499 * 110.85219 * 100.19899 * 4 2 1 7 7 C 1.36934 * 120.00324 * 200.14102 * 6 4 2 8 8 H 1.08001 * 120.00178 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00193 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00311 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00063 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47299 * 89.99493 * 11 9 7 13 13 H 1.48502 * 109.47090 * 209.99851 * 11 9 7 14 14 H 1.48502 * 109.46780 * 329.99682 * 11 9 7 15 15 C 1.55156 * 103.02221 * 218.66587 * 4 2 1 16 16 C 1.54918 * 101.58012 * 35.30827 * 15 4 2 17 17 N 1.47022 * 109.88107 * 121.09522 * 2 1 3 18 18 C 1.34780 * 125.64445 * 298.39549 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.71250 * 18 17 2 20 20 C 1.50701 * 119.99795 * 179.71926 * 18 17 2 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 18 17 22 22 C 1.38200 * 120.00092 * 99.99774 * 21 20 18 23 23 C 1.38429 * 120.00378 * 179.97438 * 22 21 20 24 24 F 1.35095 * 120.00240 * 179.97438 * 23 22 21 25 25 C 1.38474 * 119.99659 * 0.02562 * 23 22 21 26 26 C 1.38166 * 119.99999 * 359.95492 * 25 23 22 27 27 C 1.38428 * 119.99851 * 279.72147 * 21 20 18 28 28 F 1.35096 * 120.00078 * 0.02734 * 27 21 20 29 29 H 1.09000 * 109.47448 * 300.36559 * 1 2 3 30 30 H 1.09006 * 109.47364 * 60.36346 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.35888 * 1 2 3 32 32 H 0.96999 * 119.99800 * 20.14306 * 6 4 2 33 33 H 0.96996 * 119.99883 * 180.02562 * 10 9 7 34 34 H 1.08998 * 111.00676 * 277.23890 * 15 4 2 35 35 H 1.09003 * 111.04375 * 153.39206 * 15 4 2 36 36 H 1.09003 * 110.36670 * 204.15269 * 16 15 4 37 37 H 1.09001 * 110.46005 * 81.87572 * 16 15 4 38 38 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 39 39 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 40 40 H 1.08003 * 120.00202 * 359.96121 * 22 21 20 41 41 H 1.08003 * 120.00028 * 179.97438 * 25 23 22 42 42 H 1.08007 * 119.99834 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3066 -1.4406 -1.6225 6 7 2.4636 0.1966 -2.2863 7 6 2.5655 -0.2215 -3.5862 8 1 2.3461 -1.2475 -3.8422 9 6 2.9498 0.6736 -4.5752 10 7 3.0472 0.2718 -5.8248 11 14 3.3286 2.4484 -4.1326 12 1 4.7702 2.5791 -3.8015 13 1 3.0040 3.3262 -5.2856 14 1 2.5127 2.8508 -2.9589 15 6 3.2863 -1.5184 -0.6914 16 6 2.8098 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.1474 0.6239 2.7180 20 6 2.3783 -1.1932 3.5856 21 6 1.9872 -0.5889 4.9096 22 6 0.9321 -1.1200 5.6269 23 6 0.5732 -0.5653 6.8433 24 9 -0.4585 -1.0842 7.5443 25 6 1.2711 0.5222 7.3411 26 6 2.3262 1.0530 6.6242 27 6 2.6885 0.4947 5.4099 28 9 3.7231 1.0107 4.7111 29 1 -0.3634 0.5195 0.8867 30 1 -0.3634 0.5082 -0.8933 31 1 -0.3634 -1.0276 0.0064 32 1 2.6604 1.1182 -2.0564 33 1 3.3161 0.8972 -6.5157 34 1 4.1669 -0.8769 -0.6578 35 1 3.4813 -2.4157 -1.2787 36 1 3.6655 -2.0412 1.3934 37 1 2.1805 -2.7722 0.7135 38 1 1.9877 -2.2087 3.5198 39 1 3.4650 -1.2158 3.5037 40 1 0.3874 -1.9678 5.2384 41 1 0.9908 0.9553 8.2900 42 1 2.8708 1.9009 7.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986771558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:19 Heat of formation + Delta-G solvation = -101.601108 kcal Electronic energy + Delta-G solvation = -27241.544521 eV Core-core repulsion = 23050.104995 eV Total energy + Delta-G solvation = -4191.439526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.99220 -49.94715 -41.39831 -39.93156 -38.70247 -36.02778 -34.25443 -33.48491 -32.29592 -31.40978 -31.05111 -28.66503 -26.90974 -24.67051 -24.22673 -23.89795 -22.84756 -21.71418 -20.27174 -19.45236 -18.67230 -18.29888 -18.27251 -18.11305 -17.38319 -16.81359 -16.44804 -16.37078 -16.24366 -15.87573 -15.41643 -15.32689 -15.20677 -14.74612 -14.68275 -14.49703 -14.16250 -13.96757 -13.82391 -13.68059 -13.47570 -13.35818 -13.06319 -12.89131 -12.81391 -12.67678 -12.52611 -12.24192 -12.05809 -12.01161 -11.82179 -11.55123 -11.01981 -10.92088 -10.14675 -9.68817 -9.55982 -9.33106 -8.03271 -5.36969 -0.11291 -0.00038 1.37678 1.38000 1.45014 1.59604 1.87248 2.37409 2.46368 3.09564 3.18460 3.26722 3.39924 3.48374 3.54170 3.62253 3.77862 3.97221 4.00462 4.09930 4.13276 4.30215 4.33403 4.39933 4.43666 4.48435 4.65449 4.67992 4.78757 4.91128 4.92443 4.97679 5.00447 5.01727 5.08817 5.21075 5.23467 5.31921 5.43659 5.75293 5.76887 6.20643 6.54577 7.04558 7.12087 7.80246 7.97515 9.17638 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.002748 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.022356 B =10185.803498 C =10507.248645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.131 3.869 3 H 0.049 0.951 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.746 5.746 7 C -0.222 4.222 8 H 0.068 0.932 9 C -0.057 4.057 10 N -0.979 5.979 11 Si 0.944 3.056 12 H -0.280 1.280 13 H -0.297 1.297 14 H -0.260 1.260 15 C -0.149 4.149 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.525 3.475 19 O -0.578 6.578 20 C -0.093 4.093 21 C -0.082 4.082 22 C -0.116 4.116 23 C 0.077 3.923 24 F -0.140 7.140 25 C -0.120 4.120 26 C -0.126 4.126 27 C 0.083 3.917 28 F -0.145 7.145 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.362 0.638 33 H 0.257 0.743 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 -5.849 29.555 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.026 3.974 3 H 0.067 0.933 4 C 0.063 3.937 5 H 0.089 0.911 6 N -0.388 5.388 7 C -0.353 4.353 8 H 0.086 0.914 9 C -0.249 4.249 10 N -0.630 5.630 11 Si 0.773 3.227 12 H -0.206 1.206 13 H -0.223 1.223 14 H -0.185 1.185 15 C -0.190 4.190 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.458 6.458 20 C -0.132 4.132 21 C -0.083 4.083 22 C -0.135 4.135 23 C 0.057 3.943 24 F -0.119 7.119 25 C -0.139 4.139 26 C -0.144 4.144 27 C 0.063 3.937 28 F -0.123 7.123 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.195 0.805 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.164 0.836 39 H 0.143 0.857 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.695 -5.454 29.573 30.120 hybrid contribution 0.297 1.456 -0.683 1.635 sum -1.397 -3.998 28.891 29.199 Atomic orbital electron populations 1.21957 0.94141 1.02620 1.01737 1.21602 0.94951 0.95542 0.85268 0.93306 1.21418 0.95343 0.90877 0.86025 0.91089 1.42723 1.82756 1.09216 1.04151 1.18984 1.36737 0.96095 0.83510 0.91399 1.25356 1.02686 1.01758 0.95129 1.69847 1.56225 1.36060 1.00863 0.85572 0.78415 0.81482 0.77270 1.20580 1.22341 1.18535 1.23364 0.98793 1.01368 0.95480 1.22599 0.96178 0.87868 0.95200 1.48594 1.52448 1.29020 1.04232 1.20676 0.79958 0.85158 0.82659 1.90696 1.42018 1.29304 1.83738 1.20677 1.04366 1.01012 0.87108 1.19300 0.96466 0.96009 0.96535 1.21070 0.96820 1.02121 0.93462 1.17790 0.88264 0.96115 0.92082 1.91509 1.56174 1.86067 1.78134 1.21271 0.95176 0.95257 1.02193 1.21231 0.98478 1.01609 0.93095 1.17880 0.88117 0.95288 0.92397 1.91487 1.55996 1.86078 1.78770 0.92761 0.92280 0.91156 0.80479 0.93359 0.91961 0.89522 0.87643 0.88432 0.83568 0.85651 0.81959 0.81223 0.81685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.11 71.98 0.66 -3.82 16 2 C 0.13 4.19 3.21 45.34 0.15 4.33 16 3 H 0.05 1.81 7.69 -2.39 -0.02 1.79 16 4 C 0.17 5.98 3.12 46.18 0.14 6.13 16 5 H 0.07 2.51 7.83 -2.39 -0.02 2.49 16 6 N -0.75 -33.42 5.06 -317.33 -1.60 -35.03 16 7 C -0.22 -12.08 10.46 84.03 0.88 -11.20 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 9 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 10 N -0.98 -61.46 13.97 21.65 0.30 -61.16 16 11 Si 0.94 45.52 27.74 68.60 1.90 47.42 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 14 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 15 C -0.15 -4.15 6.77 31.99 0.22 -3.93 16 16 C 0.10 1.95 6.69 86.86 0.58 2.53 16 17 N -0.61 -15.51 3.06 -788.04 -2.41 -17.92 16 18 C 0.53 13.55 7.63 87.66 0.67 14.22 16 19 O -0.58 -19.87 15.00 -3.03 -0.05 -19.92 16 20 C -0.09 -1.49 4.56 29.10 0.13 -1.36 16 21 C -0.08 -1.52 4.42 -19.83 -0.09 -1.61 16 22 C -0.12 -1.89 9.65 22.31 0.22 -1.67 16 23 C 0.08 1.27 7.30 22.37 0.16 1.44 16 24 F -0.14 -2.47 17.27 44.97 0.78 -1.69 16 25 C -0.12 -1.68 10.02 22.31 0.22 -1.45 16 26 C -0.13 -1.97 10.02 22.31 0.22 -1.75 16 27 C 0.08 1.69 7.14 22.37 0.16 1.85 16 28 F -0.14 -3.48 16.65 44.97 0.75 -2.73 16 29 H 0.05 1.75 6.89 -2.39 -0.02 1.74 16 30 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.36 16.29 5.38 -92.71 -0.50 15.79 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.11 1.36 7.48 -2.39 -0.02 1.34 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.15 1.27 8.01 -2.39 -0.02 1.25 16 39 H 0.13 1.64 7.64 -2.39 -0.02 1.62 16 40 H 0.16 1.92 8.04 -2.91 -0.02 1.89 16 41 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -73.41 357.22 4.95 -68.47 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.49 Total: 21.69 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.79 Total: 0.87 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -3.72 Total: -114.11 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 1.53 Total: -4.43 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Total: -73.41 4.95 -68.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986771558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.136 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds