Wall clock time and date at job start Tue Mar 31 2020 14:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.00146 * 2 1 4 4 C 1.54340 * 109.77706 * 121.16244 * 2 1 3 5 5 H 1.08994 * 110.51448 * 215.80640 * 4 2 1 6 6 N 1.46503 * 111.00192 * 338.95510 * 4 2 1 7 7 C 1.36936 * 120.00196 * 200.23678 * 6 4 2 8 8 H 1.08001 * 119.99483 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00352 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99866 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00418 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46772 * 59.99947 * 11 9 7 13 13 H 1.48492 * 109.47489 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46851 * 300.00444 * 11 9 7 15 15 C 1.55155 * 103.01990 * 97.49200 * 4 2 1 16 16 C 1.54913 * 101.58030 * 35.30820 * 15 4 2 17 17 N 1.47024 * 109.88018 * 238.89850 * 2 1 3 18 18 C 1.34774 * 125.64670 * 59.56336 * 17 2 1 19 19 O 1.21276 * 120.00301 * 359.71723 * 18 17 2 20 20 C 1.50698 * 119.99711 * 179.71369 * 18 17 2 21 21 C 1.50704 * 109.47090 * 179.97438 * 20 18 17 22 22 C 1.38252 * 120.00406 * 265.25686 * 21 20 18 23 23 C 1.38212 * 120.07221 * 180.25777 * 22 21 20 24 24 C 1.38264 * 120.06956 * 359.48390 * 23 22 21 25 25 C 1.38363 * 119.99595 * 0.25814 * 24 23 22 26 26 F 1.35104 * 120.03285 * 180.02562 * 25 24 23 27 27 C 1.38374 * 119.99769 * 85.00249 * 21 20 18 28 28 F 1.35106 * 120.03485 * 359.97438 * 27 21 20 29 29 H 1.08997 * 109.47705 * 179.64547 * 1 2 3 30 30 H 1.09001 * 109.47031 * 299.64609 * 1 2 3 31 31 H 1.08997 * 109.46862 * 59.64117 * 1 2 3 32 32 H 0.97005 * 119.99895 * 20.23490 * 6 4 2 33 33 H 0.97003 * 120.00479 * 180.02562 * 10 9 7 34 34 H 1.08998 * 111.00552 * 277.23364 * 15 4 2 35 35 H 1.09002 * 111.03522 * 153.39746 * 15 4 2 36 36 H 1.09003 * 110.36137 * 204.14571 * 16 15 4 37 37 H 1.09004 * 110.45975 * 81.87388 * 16 15 4 38 38 H 1.08999 * 109.47275 * 60.00182 * 20 18 17 39 39 H 1.08999 * 109.47569 * 300.00244 * 20 18 17 40 40 H 1.08000 * 119.96392 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.96858 * 179.76974 * 23 22 21 42 42 H 1.07993 * 119.99814 * 180.23505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9606 -0.2815 1.6197 6 7 1.0287 -0.8105 2.2893 7 6 1.3907 -1.0478 3.5885 8 1 2.4307 -1.1920 3.8415 9 6 0.4210 -1.1031 4.5802 10 7 -0.8464 -0.9269 4.2718 11 14 0.9146 -1.4275 6.3522 12 1 1.8379 -0.3592 6.8124 13 1 -0.2974 -1.4369 7.2100 14 1 1.5963 -2.7438 6.4431 15 6 2.3560 -2.1697 0.6916 16 6 2.8612 -1.8467 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.7753 -0.3847 -2.4657 19 8 1.0748 0.5726 -2.7180 20 6 2.3613 -1.2056 -3.5853 21 6 1.9272 -0.6317 -4.9094 22 6 0.8151 -1.1421 -5.5529 23 6 0.4188 -0.6203 -6.7699 24 6 1.1275 0.4203 -7.3413 25 6 2.2378 0.9369 -6.6972 26 9 2.9305 1.9541 -7.2546 27 6 2.6386 0.4097 -5.4787 28 9 3.7222 0.9129 -4.8477 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 0.0946 -0.6813 2.0620 33 1 -1.5240 -0.9651 4.9648 34 1 1.4520 -2.7778 0.6581 35 1 3.1324 -2.6598 1.2792 36 1 2.7177 -2.7051 -1.3930 37 1 3.9125 -1.5596 -0.7132 38 1 2.0108 -2.2345 -3.5034 39 1 3.4491 -1.1861 -3.5195 40 1 0.2580 -1.9525 -5.1064 41 1 -0.4481 -1.0228 -7.2729 42 1 0.8146 0.8296 -8.2904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987057511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:23 Heat of formation + Delta-G solvation = -77.850110 kcal Electronic energy + Delta-G solvation = -27313.121394 eV Core-core repulsion = 23122.711788 eV Total energy + Delta-G solvation = -4190.409605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.63986 -48.71989 -40.26107 -39.12361 -37.43822 -34.22415 -33.19550 -31.63967 -30.73054 -30.56818 -29.25326 -27.63724 -25.24015 -23.69990 -23.09821 -22.93873 -22.11435 -19.73576 -18.67300 -18.07738 -17.57044 -17.54348 -17.14429 -16.95855 -16.35883 -15.72222 -15.33751 -15.11635 -15.06976 -14.74179 -14.60145 -14.22846 -13.84901 -13.79249 -13.33358 -13.22643 -12.95861 -12.54301 -12.46977 -12.29607 -12.06073 -12.02398 -11.76610 -11.55287 -11.50116 -11.23871 -10.99316 -10.83422 -10.48397 -10.26314 -10.02827 -9.79617 -9.62321 -9.13971 -8.97374 -8.96964 -8.43558 -7.05128 -5.83817 -3.13835 0.66908 0.69126 2.72470 2.92133 3.27262 3.39999 3.44984 3.45826 3.53561 4.07761 4.17607 4.38904 4.53042 4.59076 4.63557 4.77098 4.96918 5.02684 5.13927 5.23396 5.34400 5.44678 5.51525 5.52663 5.57329 5.61733 5.67050 5.79314 5.80135 5.95051 6.01560 6.08832 6.19970 6.29268 6.46881 6.53214 6.54181 6.68355 6.80434 6.96310 7.63583 7.71768 8.28499 8.34893 9.46254 10.01175 10.36160 11.38575 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.031527 B = 0.002501 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.913582 B =11191.582558 C =11364.654404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.071 0.929 4 C 0.173 3.827 5 H 0.062 0.938 6 N -0.717 5.717 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.153 4.153 16 C 0.096 3.904 17 N -0.608 5.608 18 C 0.529 3.471 19 O -0.535 6.535 20 C -0.101 4.101 21 C -0.068 4.068 22 C -0.088 4.088 23 C -0.099 4.099 24 C -0.128 4.128 25 C 0.066 3.934 26 F -0.130 7.130 27 C 0.083 3.917 28 F -0.126 7.126 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -3.241 -23.037 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.062 3.938 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.194 4.194 16 C -0.028 4.028 17 N -0.342 5.342 18 C 0.317 3.683 19 O -0.412 6.412 20 C -0.141 4.141 21 C -0.070 4.070 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.147 4.147 25 C 0.046 3.954 26 F -0.109 7.109 27 C 0.063 3.937 28 F -0.104 7.104 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.730 -2.652 -23.038 23.887 hybrid contribution 0.352 0.064 0.994 1.056 sum 6.082 -2.589 -22.044 23.014 Atomic orbital electron populations 1.21994 0.94520 1.02387 1.02692 1.21838 0.95440 0.95757 0.84424 0.91082 1.21170 0.93243 0.92035 0.87397 0.91986 1.42651 1.05127 1.85336 1.02945 1.19188 0.92962 1.41451 0.84025 0.91112 1.24754 0.95294 1.02447 0.98156 1.69647 0.99341 1.56220 1.32693 0.86247 0.77039 0.78067 0.84674 1.21203 1.21681 1.21218 1.23545 1.01690 1.01325 0.92863 1.22422 0.94553 0.88380 0.97416 1.48584 1.50052 1.30704 1.04873 1.19862 0.81184 0.85073 0.82194 1.90712 1.38507 1.28836 1.83161 1.20623 1.03214 1.00692 0.89572 1.19293 0.96062 0.95520 0.96112 1.21014 0.94619 1.00216 0.94738 1.21040 0.99710 0.95630 0.95380 1.21078 0.94221 0.98050 1.01369 1.17635 0.94746 0.90076 0.92969 1.91526 1.78145 1.56685 1.84541 1.17471 0.87904 0.96627 0.91725 1.91525 1.51353 1.86140 1.81388 0.92520 0.90266 0.92146 0.77109 0.93302 0.90627 0.90540 0.91306 0.91528 0.87027 0.87516 0.84223 0.84117 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 7.94 37.16 0.30 -2.65 16 2 C 0.13 2.27 3.49 -66.94 -0.23 2.03 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.17 3.27 3.44 -66.09 -0.23 3.04 16 5 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 6 N -0.72 -17.10 5.02 -51.65 -0.26 -17.36 16 7 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 11 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 C -0.15 -2.38 6.77 -24.58 -0.17 -2.55 16 16 C 0.10 1.16 6.69 -2.53 -0.02 1.14 16 17 N -0.61 -9.02 3.08 -163.01 -0.50 -9.52 16 18 C 0.53 7.84 7.63 -10.99 -0.08 7.76 16 19 O -0.54 -9.89 14.92 5.56 0.08 -9.81 16 20 C -0.10 -1.05 4.61 -29.03 -0.13 -1.19 16 21 C -0.07 -0.75 4.38 -104.56 -0.46 -1.21 16 22 C -0.09 -0.77 9.68 -39.59 -0.38 -1.15 16 23 C -0.10 -0.74 10.04 -39.58 -0.40 -1.14 16 24 C -0.13 -1.09 10.02 -39.53 -0.40 -1.49 16 25 C 0.07 0.75 7.31 -39.37 -0.29 0.46 16 26 F -0.13 -1.61 17.18 2.25 0.04 -1.57 16 27 C 0.08 1.04 7.25 -39.37 -0.29 0.75 16 28 F -0.13 -1.76 16.48 2.25 0.04 -1.72 16 29 H 0.06 1.06 8.06 -51.93 -0.42 0.65 16 30 H 0.08 1.62 6.74 -51.93 -0.35 1.27 16 31 H 0.06 1.13 6.74 -51.93 -0.35 0.78 16 32 H 0.39 9.87 4.97 -40.82 -0.20 9.67 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.84 7.76 -51.93 -0.40 0.44 16 39 H 0.11 0.98 7.79 -51.93 -0.40 0.57 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -32.34 355.88 -8.00 -40.35 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.44 Total: 7.38 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.02 Total: -3.21 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.04 Total: -53.51 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.34 -8.00 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987057511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.503 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds