Wall clock time and date at job start Tue Mar 31 2020 14:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.00146 * 2 1 4 4 C 1.54340 * 109.77706 * 121.16244 * 2 1 3 5 5 H 1.08994 * 110.51448 * 215.80640 * 4 2 1 6 6 N 1.46503 * 111.00192 * 338.95510 * 4 2 1 7 7 C 1.36936 * 120.00196 * 200.23678 * 6 4 2 8 8 H 1.08001 * 119.99483 * 359.97438 * 7 6 4 9 9 C 1.38808 * 120.00352 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99866 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00418 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46772 * 59.99947 * 11 9 7 13 13 H 1.48492 * 109.47489 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46851 * 300.00444 * 11 9 7 15 15 C 1.55155 * 103.01990 * 97.49200 * 4 2 1 16 16 C 1.54913 * 101.58030 * 35.30820 * 15 4 2 17 17 N 1.47024 * 109.88018 * 238.89850 * 2 1 3 18 18 C 1.34774 * 125.64670 * 59.56336 * 17 2 1 19 19 O 1.21276 * 120.00301 * 359.71723 * 18 17 2 20 20 C 1.50698 * 119.99711 * 179.71369 * 18 17 2 21 21 C 1.50704 * 109.47090 * 179.97438 * 20 18 17 22 22 C 1.38252 * 120.00406 * 265.25686 * 21 20 18 23 23 C 1.38212 * 120.07221 * 180.25777 * 22 21 20 24 24 C 1.38264 * 120.06956 * 359.48390 * 23 22 21 25 25 C 1.38363 * 119.99595 * 0.25814 * 24 23 22 26 26 F 1.35104 * 120.03285 * 180.02562 * 25 24 23 27 27 C 1.38374 * 119.99769 * 85.00249 * 21 20 18 28 28 F 1.35106 * 120.03485 * 359.97438 * 27 21 20 29 29 H 1.08997 * 109.47705 * 179.64547 * 1 2 3 30 30 H 1.09001 * 109.47031 * 299.64609 * 1 2 3 31 31 H 1.08997 * 109.46862 * 59.64117 * 1 2 3 32 32 H 0.97005 * 119.99895 * 20.23490 * 6 4 2 33 33 H 0.97003 * 120.00479 * 180.02562 * 10 9 7 34 34 H 1.08998 * 111.00552 * 277.23364 * 15 4 2 35 35 H 1.09002 * 111.03522 * 153.39746 * 15 4 2 36 36 H 1.09003 * 110.36137 * 204.14571 * 16 15 4 37 37 H 1.09004 * 110.45975 * 81.87388 * 16 15 4 38 38 H 1.08999 * 109.47275 * 60.00182 * 20 18 17 39 39 H 1.08999 * 109.47569 * 300.00244 * 20 18 17 40 40 H 1.08000 * 119.96392 * 359.97438 * 22 21 20 41 41 H 1.08002 * 119.96858 * 179.76974 * 23 22 21 42 42 H 1.07993 * 119.99814 * 180.23505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9606 -0.2815 1.6197 6 7 1.0287 -0.8105 2.2893 7 6 1.3907 -1.0478 3.5885 8 1 2.4307 -1.1920 3.8415 9 6 0.4210 -1.1031 4.5802 10 7 -0.8464 -0.9269 4.2718 11 14 0.9146 -1.4275 6.3522 12 1 1.8379 -0.3592 6.8124 13 1 -0.2974 -1.4369 7.2100 14 1 1.5963 -2.7438 6.4431 15 6 2.3560 -2.1697 0.6916 16 6 2.8612 -1.8467 -0.7367 17 7 2.0300 -0.7142 -1.1839 18 6 1.7753 -0.3847 -2.4657 19 8 1.0748 0.5726 -2.7180 20 6 2.3613 -1.2056 -3.5853 21 6 1.9272 -0.6317 -4.9094 22 6 0.8151 -1.1421 -5.5529 23 6 0.4188 -0.6203 -6.7699 24 6 1.1275 0.4203 -7.3413 25 6 2.2378 0.9369 -6.6972 26 9 2.9305 1.9541 -7.2546 27 6 2.6386 0.4097 -5.4787 28 9 3.7222 0.9129 -4.8477 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 0.0946 -0.6813 2.0620 33 1 -1.5240 -0.9651 4.9648 34 1 1.4520 -2.7778 0.6581 35 1 3.1324 -2.6598 1.2792 36 1 2.7177 -2.7051 -1.3930 37 1 3.9125 -1.5596 -0.7132 38 1 2.0108 -2.2345 -3.5034 39 1 3.4491 -1.1861 -3.5195 40 1 0.2580 -1.9525 -5.1064 41 1 -0.4481 -1.0228 -7.2729 42 1 0.8146 0.8296 -8.2904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987057511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:22 Heat of formation + Delta-G solvation = -97.030704 kcal Electronic energy + Delta-G solvation = -27313.953127 eV Core-core repulsion = 23122.711788 eV Total energy + Delta-G solvation = -4191.241338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.52844 -49.62176 -41.41206 -39.98092 -38.70955 -35.92113 -34.13768 -33.26386 -32.08166 -31.27965 -30.78770 -28.61296 -26.77829 -25.41817 -24.13076 -23.83013 -23.06835 -21.04317 -19.95223 -19.43311 -18.91017 -18.34163 -18.22999 -17.87752 -17.30070 -17.03011 -16.54580 -16.38925 -16.04161 -15.78839 -15.70180 -15.51439 -15.41788 -14.80723 -14.69027 -14.27485 -14.09603 -13.88186 -13.57861 -13.33599 -13.13405 -13.05478 -12.98966 -12.87379 -12.82855 -12.68590 -12.51479 -12.23159 -12.11827 -12.03313 -11.59907 -11.51797 -10.91545 -10.89197 -9.90918 -9.73895 -9.66302 -9.00407 -7.93004 -5.22007 -0.05258 -0.03941 1.49803 1.52358 1.58213 1.61344 1.91561 2.43981 2.58697 2.80007 3.26990 3.37512 3.44897 3.55136 3.74894 3.79051 3.89983 3.94161 4.00219 4.18274 4.20431 4.30498 4.37783 4.42848 4.47438 4.58548 4.66934 4.75808 4.83766 4.86747 4.89576 4.99374 5.06375 5.16612 5.21846 5.27409 5.28683 5.33814 5.51191 5.56024 5.77760 6.28639 6.57852 7.14165 7.35975 8.09770 8.33445 9.30486 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.031527 B = 0.002501 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.913582 B =11191.582558 C =11364.654404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.134 3.866 3 H 0.057 0.943 4 C 0.164 3.836 5 H 0.062 0.938 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.080 0.920 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.280 1.280 13 H -0.300 1.300 14 H -0.275 1.275 15 C -0.143 4.143 16 C 0.102 3.898 17 N -0.609 5.609 18 C 0.524 3.476 19 O -0.579 6.579 20 C -0.092 4.092 21 C -0.084 4.084 22 C -0.088 4.088 23 C -0.089 4.089 24 C -0.123 4.123 25 C 0.039 3.961 26 F -0.144 7.144 27 C 0.050 3.950 28 F -0.145 7.145 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.380 0.620 33 H 0.250 0.750 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.150 0.850 39 H 0.121 0.879 40 H 0.166 0.834 41 H 0.179 0.821 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -5.469 -24.679 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.075 0.925 4 C 0.054 3.946 5 H 0.080 0.920 6 N -0.375 5.375 7 C -0.371 4.371 8 H 0.098 0.902 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.207 1.207 13 H -0.226 1.226 14 H -0.201 1.201 15 C -0.184 4.184 16 C -0.020 4.020 17 N -0.342 5.342 18 C 0.314 3.686 19 O -0.459 6.459 20 C -0.131 4.131 21 C -0.085 4.085 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.141 4.141 25 C 0.019 3.981 26 F -0.123 7.123 27 C 0.030 3.970 28 F -0.123 7.123 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.216 0.784 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.184 0.816 41 H 0.196 0.804 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.651 -4.908 -24.718 26.063 hybrid contribution 0.082 0.791 1.392 1.603 sum 6.734 -4.117 -23.326 24.625 Atomic orbital electron populations 1.21792 0.95568 1.01542 1.01089 1.21534 0.94450 0.95434 0.85613 0.92515 1.21374 0.91893 0.94554 0.86747 0.92043 1.42824 1.05697 1.85616 1.03400 1.19603 0.93243 1.39070 0.85171 0.90171 1.25543 0.95381 1.03752 1.02054 1.69812 1.00306 1.58644 1.33377 0.85222 0.76279 0.78298 0.80002 1.20651 1.22634 1.20073 1.23339 1.01545 0.98300 0.95206 1.22593 0.94987 0.88756 0.95629 1.48626 1.50249 1.31101 1.04235 1.20715 0.80345 0.84828 0.82686 1.90693 1.40557 1.30896 1.83765 1.20675 1.03850 1.01425 0.87145 1.19497 0.96859 0.95555 0.96581 1.21447 0.93647 1.00465 0.95005 1.21526 1.00019 0.94385 0.94775 1.21472 0.92838 0.97806 1.02028 1.18040 0.96041 0.90577 0.93451 1.91481 1.78683 1.57411 1.84726 1.17896 0.88388 0.98036 0.92654 1.91461 1.52383 1.86634 1.81851 0.92901 0.92836 0.92557 0.78351 0.94089 0.92152 0.89422 0.87193 0.89180 0.83252 0.86070 0.81646 0.80361 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 7.94 71.98 0.57 -4.87 16 2 C 0.13 4.74 3.49 45.35 0.16 4.89 16 3 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.16 6.11 3.44 46.18 0.16 6.27 16 5 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 6 N -0.73 -35.43 5.02 -317.31 -1.59 -37.02 16 7 C -0.24 -12.71 9.98 84.03 0.84 -11.87 16 8 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 9 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 10 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 11 Si 0.97 45.05 29.55 68.60 2.03 47.07 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 C -0.14 -4.14 6.77 31.99 0.22 -3.92 16 16 C 0.10 2.10 6.69 86.86 0.58 2.68 16 17 N -0.61 -16.93 3.08 -788.02 -2.43 -19.36 16 18 C 0.52 14.65 7.63 87.66 0.67 15.32 16 19 O -0.58 -21.32 14.92 -3.02 -0.05 -21.36 16 20 C -0.09 -1.62 4.61 29.10 0.13 -1.49 16 21 C -0.08 -1.66 4.38 -19.83 -0.09 -1.75 16 22 C -0.09 -1.24 9.68 22.27 0.22 -1.03 16 23 C -0.09 -1.01 10.04 22.27 0.22 -0.79 16 24 C -0.12 -1.81 10.02 22.31 0.22 -1.59 16 25 C 0.04 0.87 7.31 22.41 0.16 1.04 16 26 F -0.14 -3.64 17.18 44.97 0.77 -2.87 16 27 C 0.05 1.24 7.25 22.41 0.16 1.40 16 28 F -0.14 -4.14 16.48 44.97 0.74 -3.40 16 29 H 0.05 2.03 8.06 -2.39 -0.02 2.01 16 30 H 0.05 2.31 6.74 -2.39 -0.02 2.29 16 31 H 0.06 2.18 6.74 -2.39 -0.02 2.16 16 32 H 0.38 19.87 4.97 -92.70 -0.46 19.41 16 33 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.11 1.46 7.48 -2.39 -0.02 1.44 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.15 1.47 7.76 -2.39 -0.02 1.45 16 39 H 0.12 1.81 7.79 -2.39 -0.02 1.80 16 40 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 42 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -74.18 355.88 5.05 -69.13 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.59 Total: 25.49 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.70 Total: 0.55 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -3.74 Total: -114.62 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 1.51 Total: -6.27 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.18 5.05 -69.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987057511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.897 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds