Wall clock time and date at job start Tue Mar 31 2020 14:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.87434 * 2 1 4 4 C 1.54324 * 109.87922 * 121.01405 * 2 1 3 5 5 C 1.55155 * 102.94503 * 97.22148 * 4 2 1 6 6 H 1.08995 * 111.00842 * 277.39257 * 5 4 2 7 7 N 1.46500 * 111.00584 * 153.57532 * 5 4 2 8 8 C 1.36931 * 120.00146 * 155.00483 * 7 5 4 9 9 H 1.08003 * 119.99867 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00053 * 179.72485 * 8 7 5 11 11 N 1.31617 * 120.00137 * 180.27218 * 10 8 7 12 12 Si 1.86802 * 119.99932 * 0.27709 * 10 8 7 13 13 H 1.48498 * 109.47291 * 89.99986 * 12 10 8 14 14 H 1.48506 * 109.46728 * 209.99806 * 12 10 8 15 15 H 1.48497 * 109.47212 * 329.99326 * 12 10 8 16 16 C 1.54913 * 101.57951 * 35.50525 * 5 4 2 17 17 N 1.47021 * 109.88484 * 238.81889 * 2 1 3 18 18 C 1.34778 * 125.64526 * 59.54279 * 17 2 1 19 19 O 1.21546 * 120.00250 * 354.23066 * 18 17 2 20 20 C 1.47847 * 119.99739 * 174.21948 * 18 17 2 21 21 C 1.39597 * 120.14138 * 155.60045 * 20 18 17 22 22 C 1.37934 * 119.85081 * 179.97438 * 21 20 18 23 23 C 1.38378 * 120.14727 * 0.02562 * 22 21 20 24 24 C 1.38339 * 120.29302 * 359.96942 * 23 22 21 25 25 C 1.50700 * 119.92860 * 179.97438 * 24 23 22 26 26 F 1.39907 * 109.46622 * 120.00567 * 25 24 23 27 27 F 1.39897 * 109.47504 * 240.00291 * 25 24 23 28 28 C 1.37982 * 120.14431 * 359.75629 * 24 23 22 29 29 H 1.08996 * 109.47473 * 298.99051 * 1 2 3 30 30 H 1.09006 * 109.46778 * 58.98901 * 1 2 3 31 31 H 1.09000 * 109.47263 * 178.98516 * 1 2 3 32 32 H 1.09004 * 110.72126 * 338.85862 * 4 2 1 33 33 H 1.09004 * 110.87504 * 215.66288 * 4 2 1 34 34 H 0.97001 * 119.99882 * 335.00208 * 7 5 4 35 35 H 0.97004 * 120.00278 * 180.02562 * 11 10 8 36 36 H 1.08992 * 110.37055 * 81.82619 * 16 5 4 37 37 H 1.08999 * 110.36358 * 204.15677 * 16 5 4 38 38 H 1.07997 * 120.07611 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.92598 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.85658 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47320 * 0.02562 * 25 24 23 42 42 H 1.07997 * 120.07511 * 180.24995 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3517 -2.1685 0.6956 6 1 1.4452 -2.7729 0.6650 7 7 3.3935 -2.8292 1.4858 8 6 3.4566 -4.1964 1.5290 9 1 2.7381 -4.7877 0.9807 10 6 4.4472 -4.8223 2.2731 11 7 4.5111 -6.1364 2.3102 12 14 5.6894 -3.7996 3.2220 13 1 5.1738 -3.5382 4.5898 14 1 6.9746 -4.5385 3.3102 15 1 5.9075 -2.5092 2.5201 16 6 2.8568 -1.8509 -0.7340 17 7 2.0301 -0.7158 -1.1828 18 6 1.7751 -0.3883 -2.4651 19 8 0.9940 0.5075 -2.7198 20 6 2.4459 -1.1184 -3.5619 21 6 1.8615 -1.1719 -4.8285 22 6 2.4927 -1.8543 -5.8476 23 6 3.7023 -2.4854 -5.6164 24 6 4.2869 -2.4361 -4.3635 25 6 5.6041 -3.1268 -4.1207 26 9 6.5560 -2.1857 -3.7138 27 9 5.4468 -4.0930 -3.1214 28 6 3.6687 -1.7521 -3.3369 29 1 -0.3634 0.4980 0.8988 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0182 32 1 1.2917 -0.7861 2.0212 33 1 2.9650 -0.2821 1.6217 34 1 4.0386 -2.2981 1.9785 35 1 5.2031 -6.5739 2.8306 36 1 3.9091 -1.5679 -0.7104 37 1 2.7087 -2.7101 -1.3882 38 1 0.9172 -0.6802 -5.0102 39 1 2.0414 -1.8969 -6.8279 40 1 4.1922 -3.0188 -6.4176 41 1 5.9379 -3.6063 -5.0409 42 1 4.1281 -1.7109 -2.3604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989696805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:26 Heat of formation + Delta-G solvation = -83.045015 kcal Electronic energy + Delta-G solvation = -28127.704610 eV Core-core repulsion = 23937.069736 eV Total energy + Delta-G solvation = -4190.634873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.94870 -46.92818 -40.58763 -38.91807 -37.43264 -34.37528 -32.72614 -32.22809 -31.54658 -30.47471 -28.87727 -26.31144 -25.72187 -24.59736 -23.35405 -22.34442 -21.39028 -20.33722 -19.33159 -17.82210 -17.60603 -17.32501 -17.15089 -16.60079 -16.23606 -15.76567 -15.54100 -14.89361 -14.56063 -14.22873 -13.90985 -13.84222 -13.62888 -13.48100 -13.28962 -13.19391 -12.98155 -12.85555 -12.75373 -12.58857 -12.16582 -12.03634 -11.95094 -11.62441 -11.55408 -11.09864 -11.03946 -10.83847 -10.67465 -10.38662 -10.09908 -9.84013 -9.66081 -9.32644 -9.22122 -9.04628 -8.50419 -7.41684 -5.84965 -3.23571 0.63420 0.96949 2.71160 3.00798 3.32798 3.35087 3.41638 3.54586 3.61343 4.05151 4.26921 4.48282 4.51956 4.73766 4.74368 4.90305 4.98576 4.99807 5.06228 5.10709 5.18856 5.26168 5.41251 5.48611 5.51307 5.59132 5.71482 5.75394 5.83646 5.96694 5.99409 6.02457 6.05126 6.07878 6.16936 6.30651 6.40177 6.48888 6.55364 6.67842 7.61800 7.88130 8.19281 8.33117 9.09173 9.81244 9.98523 11.32556 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.005405 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.123311 B = 5179.032315 C = 7345.429240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.143 4.143 5 C 0.180 3.820 6 H 0.078 0.922 7 N -0.734 5.734 8 C -0.255 4.255 9 H 0.092 0.908 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.882 3.118 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.066 3.934 17 N -0.603 5.603 18 C 0.573 3.427 19 O -0.544 6.544 20 C -0.129 4.129 21 C -0.044 4.044 22 C -0.133 4.133 23 C -0.065 4.065 24 C -0.178 4.178 25 C 0.312 3.688 26 F -0.200 7.200 27 F -0.187 7.187 28 C -0.053 4.053 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.365 0.635 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 9.987 -15.127 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.181 4.181 5 C 0.067 3.933 6 H 0.096 0.904 7 N -0.375 5.375 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.184 4.184 11 N -0.573 5.573 12 Si 0.712 3.288 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.059 4.059 17 N -0.336 5.336 18 C 0.362 3.638 19 O -0.423 6.423 20 C -0.132 4.132 21 C -0.063 4.063 22 C -0.151 4.151 23 C -0.083 4.083 24 C -0.178 4.178 25 C 0.258 3.742 26 F -0.181 7.181 27 F -0.168 7.168 28 C -0.071 4.071 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.198 0.802 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.134 0.866 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.947 10.186 -15.270 18.590 hybrid contribution 1.205 0.498 0.770 1.514 sum -1.742 10.683 -14.499 18.094 Atomic orbital electron populations 1.22159 0.94662 1.02578 1.02611 1.21523 0.94774 0.95775 0.84274 0.90977 1.23088 1.01847 0.97048 0.96159 1.21264 0.92758 0.91247 0.87987 0.90379 1.42669 1.33856 1.04513 1.56474 1.19054 1.12674 0.80431 1.26247 0.88981 1.24662 0.98583 0.95276 0.99886 1.69694 1.35908 1.06953 1.44788 0.86597 0.81913 0.79786 0.80481 1.20939 1.21586 1.20252 1.23756 0.94521 0.87503 1.00144 1.48489 1.50089 1.30545 1.04469 1.17850 0.81403 0.83090 0.81435 1.90727 1.36061 1.32088 1.83431 1.19911 0.96440 1.01946 0.94875 1.21371 0.99323 0.94696 0.90920 1.21084 0.95529 0.98866 0.99597 1.21124 0.95089 0.96774 0.95332 1.20363 0.97883 1.03846 0.95744 1.20366 0.84874 0.79628 0.89311 1.93023 1.66043 1.66706 1.92377 1.93125 1.95909 1.63382 1.64425 1.21815 0.93675 0.91803 0.99807 0.91888 0.91162 0.92277 0.89668 0.90727 0.80199 0.92884 0.91097 0.90317 0.84426 0.84646 0.84880 0.86557 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.04 37.16 0.34 -1.79 16 2 C 0.14 1.97 3.53 -66.95 -0.24 1.73 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.06 6.14 -24.90 -0.15 -2.21 16 5 C 0.18 3.20 3.71 -65.78 -0.24 2.96 16 6 H 0.08 1.46 8.09 -51.93 -0.42 1.03 16 7 N -0.73 -16.18 5.05 -51.35 -0.26 -16.44 16 8 C -0.25 -6.82 10.44 -15.06 -0.16 -6.98 16 9 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 10 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 11 N -0.93 -28.29 13.97 55.49 0.78 -27.52 16 12 Si 0.88 21.36 27.74 -169.99 -4.72 16.64 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.28 -6.27 6.51 56.52 0.37 -5.90 16 16 C 0.07 1.10 4.69 -2.53 -0.01 1.08 16 17 N -0.60 -9.30 3.08 -164.12 -0.51 -9.80 16 18 C 0.57 9.11 7.46 -12.33 -0.09 9.02 16 19 O -0.54 -9.63 15.33 5.33 0.08 -9.55 16 20 C -0.13 -1.80 5.67 -104.97 -0.59 -2.40 16 21 C -0.04 -0.51 9.59 -39.19 -0.38 -0.89 16 22 C -0.13 -1.21 10.03 -39.64 -0.40 -1.60 16 23 C -0.06 -0.59 9.66 -39.49 -0.38 -0.97 16 24 C -0.18 -2.11 5.37 -104.68 -0.56 -2.67 16 25 C 0.31 3.64 5.45 36.01 0.20 3.84 16 26 F -0.20 -2.72 17.25 2.25 0.04 -2.68 16 27 F -0.19 -2.93 17.26 2.25 0.04 -2.89 16 28 C -0.05 -0.73 7.62 -39.18 -0.30 -1.03 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.02 6.61 -51.93 -0.34 0.67 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 33 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 34 H 0.36 7.90 5.62 -40.82 -0.23 7.67 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.07 1.20 6.83 -51.93 -0.35 0.85 16 37 H 0.08 1.36 6.84 -51.93 -0.36 1.00 16 38 H 0.14 1.49 7.84 -52.49 -0.41 1.08 16 39 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.13 0.75 7.94 -52.48 -0.42 0.33 16 41 H 0.12 0.84 7.87 -51.93 -0.41 0.43 16 42 H 0.15 2.24 4.61 -52.49 -0.24 1.99 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -32.52 351.23 -7.61 -40.13 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.29 Total: 8.46 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.07 Total: -1.65 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.01 Total: -53.76 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.08 Total: -5.57 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.72 Total: 16.64 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.52 -7.61 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989696805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.916 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds