Wall clock time and date at job start Tue Mar 31 2020 14:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.87434 * 2 1 4 4 C 1.54324 * 109.87922 * 121.01405 * 2 1 3 5 5 C 1.55155 * 102.94503 * 97.22148 * 4 2 1 6 6 H 1.08995 * 111.00842 * 277.39257 * 5 4 2 7 7 N 1.46500 * 111.00584 * 153.57532 * 5 4 2 8 8 C 1.36931 * 120.00146 * 155.00483 * 7 5 4 9 9 H 1.08003 * 119.99867 * 359.97438 * 8 7 5 10 10 C 1.38809 * 120.00053 * 179.72485 * 8 7 5 11 11 N 1.31617 * 120.00137 * 180.27218 * 10 8 7 12 12 Si 1.86802 * 119.99932 * 0.27709 * 10 8 7 13 13 H 1.48498 * 109.47291 * 89.99986 * 12 10 8 14 14 H 1.48506 * 109.46728 * 209.99806 * 12 10 8 15 15 H 1.48497 * 109.47212 * 329.99326 * 12 10 8 16 16 C 1.54913 * 101.57951 * 35.50525 * 5 4 2 17 17 N 1.47021 * 109.88484 * 238.81889 * 2 1 3 18 18 C 1.34778 * 125.64526 * 59.54279 * 17 2 1 19 19 O 1.21546 * 120.00250 * 354.23066 * 18 17 2 20 20 C 1.47847 * 119.99739 * 174.21948 * 18 17 2 21 21 C 1.39597 * 120.14138 * 155.60045 * 20 18 17 22 22 C 1.37934 * 119.85081 * 179.97438 * 21 20 18 23 23 C 1.38378 * 120.14727 * 0.02562 * 22 21 20 24 24 C 1.38339 * 120.29302 * 359.96942 * 23 22 21 25 25 C 1.50700 * 119.92860 * 179.97438 * 24 23 22 26 26 F 1.39907 * 109.46622 * 120.00567 * 25 24 23 27 27 F 1.39897 * 109.47504 * 240.00291 * 25 24 23 28 28 C 1.37982 * 120.14431 * 359.75629 * 24 23 22 29 29 H 1.08996 * 109.47473 * 298.99051 * 1 2 3 30 30 H 1.09006 * 109.46778 * 58.98901 * 1 2 3 31 31 H 1.09000 * 109.47263 * 178.98516 * 1 2 3 32 32 H 1.09004 * 110.72126 * 338.85862 * 4 2 1 33 33 H 1.09004 * 110.87504 * 215.66288 * 4 2 1 34 34 H 0.97001 * 119.99882 * 335.00208 * 7 5 4 35 35 H 0.97004 * 120.00278 * 180.02562 * 11 10 8 36 36 H 1.08992 * 110.37055 * 81.82619 * 16 5 4 37 37 H 1.08999 * 110.36358 * 204.15677 * 16 5 4 38 38 H 1.07997 * 120.07611 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.92598 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.85658 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47320 * 0.02562 * 25 24 23 42 42 H 1.07997 * 120.07511 * 180.24995 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 6 2.3517 -2.1685 0.6956 6 1 1.4452 -2.7729 0.6650 7 7 3.3935 -2.8292 1.4858 8 6 3.4566 -4.1964 1.5290 9 1 2.7381 -4.7877 0.9807 10 6 4.4472 -4.8223 2.2731 11 7 4.5111 -6.1364 2.3102 12 14 5.6894 -3.7996 3.2220 13 1 5.1738 -3.5382 4.5898 14 1 6.9746 -4.5385 3.3102 15 1 5.9075 -2.5092 2.5201 16 6 2.8568 -1.8509 -0.7340 17 7 2.0301 -0.7158 -1.1828 18 6 1.7751 -0.3883 -2.4651 19 8 0.9940 0.5075 -2.7198 20 6 2.4459 -1.1184 -3.5619 21 6 1.8615 -1.1719 -4.8285 22 6 2.4927 -1.8543 -5.8476 23 6 3.7023 -2.4854 -5.6164 24 6 4.2869 -2.4361 -4.3635 25 6 5.6041 -3.1268 -4.1207 26 9 6.5560 -2.1857 -3.7138 27 9 5.4468 -4.0930 -3.1214 28 6 3.6687 -1.7521 -3.3369 29 1 -0.3634 0.4980 0.8988 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3634 -1.0275 -0.0182 32 1 1.2917 -0.7861 2.0212 33 1 2.9650 -0.2821 1.6217 34 1 4.0386 -2.2981 1.9785 35 1 5.2031 -6.5739 2.8306 36 1 3.9091 -1.5679 -0.7104 37 1 2.7087 -2.7101 -1.3882 38 1 0.9172 -0.6802 -5.0102 39 1 2.0414 -1.8969 -6.8279 40 1 4.1922 -3.0188 -6.4176 41 1 5.9379 -3.6063 -5.0409 42 1 4.1281 -1.7109 -2.3604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989696805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:25 Heat of formation + Delta-G solvation = -103.127607 kcal Electronic energy + Delta-G solvation = -28128.575456 eV Core-core repulsion = 23937.069736 eV Total energy + Delta-G solvation = -4191.505720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.96299 -47.97736 -41.75173 -39.93314 -38.74243 -36.14710 -33.86233 -33.45951 -33.10213 -31.48689 -30.48967 -27.28476 -26.86936 -25.95163 -24.95155 -23.29135 -22.68949 -21.66808 -20.51970 -19.72987 -18.73402 -18.29250 -18.17250 -17.68431 -17.22066 -17.17150 -16.67191 -16.34896 -15.88799 -15.53170 -15.32393 -14.93076 -14.84194 -14.67770 -14.61963 -14.45214 -14.35537 -14.10933 -13.85418 -13.76983 -13.46153 -13.21034 -13.14529 -12.95988 -12.85481 -12.62874 -12.32292 -12.12808 -11.96974 -11.90021 -11.84608 -11.52033 -11.14883 -10.91757 -10.23448 -10.09658 -9.80602 -9.36352 -8.02491 -5.38645 -0.27565 0.07335 1.39185 1.42381 1.48787 1.61425 1.82316 2.48242 2.60458 2.73434 3.14360 3.25739 3.26663 3.47694 3.66705 3.71403 3.80276 3.86546 4.02645 4.05562 4.07743 4.17348 4.21487 4.33229 4.37631 4.40099 4.59005 4.63929 4.64986 4.73772 4.84006 4.96014 5.04953 5.12154 5.15997 5.20291 5.23102 5.32038 5.42668 5.71563 5.75463 6.20196 6.35257 6.95661 7.05419 7.77664 7.97494 9.18408 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.005405 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.123311 B = 5179.032315 C = 7345.429240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.082 0.918 4 C -0.128 4.128 5 C 0.170 3.830 6 H 0.066 0.934 7 N -0.735 5.735 8 C -0.235 4.235 9 H 0.058 0.942 10 C -0.055 4.055 11 N -0.979 5.979 12 Si 0.950 3.050 13 H -0.275 1.275 14 H -0.299 1.299 15 H -0.251 1.251 16 C 0.085 3.915 17 N -0.604 5.604 18 C 0.569 3.431 19 O -0.566 6.566 20 C -0.155 4.155 21 C -0.051 4.051 22 C -0.121 4.121 23 C -0.048 4.048 24 C -0.191 4.191 25 C 0.302 3.698 26 F -0.215 7.215 27 F -0.217 7.217 28 C -0.073 4.073 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.370 0.630 35 H 0.258 0.742 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.142 0.858 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 11.584 -16.864 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 H 0.100 0.900 4 C -0.166 4.166 5 C 0.060 3.940 6 H 0.084 0.916 7 N -0.377 5.377 8 C -0.366 4.366 9 H 0.076 0.924 10 C -0.247 4.247 11 N -0.629 5.629 12 Si 0.777 3.223 13 H -0.201 1.201 14 H -0.226 1.226 15 H -0.176 1.176 16 C -0.041 4.041 17 N -0.336 5.336 18 C 0.360 3.640 19 O -0.448 6.448 20 C -0.158 4.158 21 C -0.070 4.070 22 C -0.138 4.138 23 C -0.066 4.066 24 C -0.191 4.191 25 C 0.249 3.751 26 F -0.196 7.196 27 F -0.198 7.198 28 C -0.092 4.092 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.204 0.796 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.159 0.841 39 H 0.194 0.806 40 H 0.198 0.802 41 H 0.189 0.811 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.713 11.846 -17.024 20.916 hybrid contribution 1.022 -0.004 1.152 1.540 sum -1.691 11.842 -15.872 19.874 Atomic orbital electron populations 1.22096 0.93784 1.02135 1.03222 1.21675 0.95488 0.96018 0.83504 0.89994 1.23016 1.02942 0.94060 0.96623 1.21408 0.91174 0.92937 0.88507 0.91590 1.42561 1.35059 1.02791 1.57333 1.18974 1.11017 0.82394 1.24215 0.92384 1.25445 1.01150 0.96342 1.01784 1.69875 1.37199 1.09108 1.46690 0.85497 0.78533 0.78941 0.79323 1.20072 1.22600 1.17567 1.23342 0.94362 0.87585 0.98782 1.48506 1.49912 1.30171 1.05048 1.18238 0.81054 0.82869 0.81832 1.90699 1.37216 1.33116 1.83731 1.19883 0.97025 1.03449 0.95410 1.21596 0.99681 0.95127 0.90619 1.21557 0.95059 0.96801 1.00393 1.21648 0.94580 0.95326 0.95013 1.20571 0.98191 1.03830 0.96557 1.21062 0.84781 0.79117 0.90098 1.92985 1.66599 1.67374 1.92678 1.93063 1.96077 1.64572 1.66112 1.21685 0.94231 0.93481 0.99803 0.89288 0.92573 0.93117 0.87891 0.89659 0.79588 0.93303 0.91550 0.91777 0.84061 0.80612 0.80233 0.81124 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.04 71.98 0.65 -3.24 16 2 C 0.14 3.69 3.53 45.34 0.16 3.85 16 3 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.13 -3.49 6.14 31.78 0.20 -3.29 16 5 C 0.17 6.10 3.71 46.38 0.17 6.27 16 6 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 7 N -0.74 -32.38 5.05 -316.38 -1.60 -33.98 16 8 C -0.24 -12.94 10.44 84.03 0.88 -12.06 16 9 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 10 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 11 N -0.98 -61.80 13.97 21.65 0.30 -61.50 16 12 Si 0.95 44.30 27.74 68.60 1.90 46.21 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 15 H -0.25 -10.52 6.51 99.48 0.65 -9.87 16 16 C 0.08 2.90 4.69 86.86 0.41 3.30 16 17 N -0.60 -18.83 3.08 -791.43 -2.44 -21.26 16 18 C 0.57 18.40 7.46 86.79 0.65 19.05 16 19 O -0.57 -20.23 15.33 -3.86 -0.06 -20.28 16 20 C -0.15 -4.36 5.67 -20.09 -0.11 -4.47 16 21 C -0.05 -1.12 9.59 22.53 0.22 -0.90 16 22 C -0.12 -1.75 10.03 22.23 0.22 -1.52 16 23 C -0.05 -0.68 9.66 22.33 0.22 -0.47 16 24 C -0.19 -4.24 5.37 -19.90 -0.11 -4.35 16 25 C 0.30 6.62 5.45 71.24 0.39 7.01 16 26 F -0.22 -5.72 17.25 44.97 0.78 -4.95 16 27 F -0.22 -6.86 17.26 44.97 0.78 -6.09 16 28 C -0.07 -2.07 7.62 22.53 0.17 -1.90 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.59 6.61 -2.38 -0.02 1.58 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.10 2.47 7.83 -2.38 -0.02 2.45 16 33 H 0.08 2.19 8.00 -2.38 -0.02 2.17 16 34 H 0.37 15.51 5.62 -92.71 -0.52 14.99 16 35 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.07 2.33 6.83 -2.39 -0.02 2.31 16 37 H 0.06 2.35 6.84 -2.39 -0.02 2.34 16 38 H 0.14 2.90 7.84 -2.91 -0.02 2.87 16 39 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.18 0.90 7.94 -2.91 -0.02 0.88 16 41 H 0.17 1.82 7.87 -2.39 -0.02 1.81 16 42 H 0.13 4.00 4.61 -2.91 -0.01 3.98 16 Total: -1.00 -74.72 351.23 4.72 -70.01 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.48 Total: 27.27 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 4.57 Total: 4.57 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -3.73 Total: -116.74 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 1.55 Total: -11.03 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.21 kcal Total: -74.72 4.72 -70.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989696805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.119 kcal (2) G-P(sol) polarization free energy of solvation -74.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds