Wall clock time and date at job start Tue Mar 31 2020 14:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.41470 * 2 1 4 4 C 1.54921 * 110.36685 * 237.70762 * 2 1 3 5 5 C 1.55158 * 101.58017 * 204.15151 * 4 2 1 6 6 H 1.08997 * 110.87048 * 277.06713 * 5 4 2 7 7 N 1.46500 * 110.71783 * 153.86533 * 5 4 2 8 8 C 1.36934 * 119.99720 * 160.02506 * 7 5 4 9 9 H 1.07993 * 120.00548 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99568 * 180.27204 * 8 7 5 11 11 N 1.31616 * 120.00049 * 359.72469 * 10 8 7 12 12 Si 1.86804 * 119.99810 * 179.72117 * 10 8 7 13 13 H 1.48498 * 109.46853 * 90.00350 * 12 10 8 14 14 H 1.48493 * 109.47088 * 210.00433 * 12 10 8 15 15 H 1.48496 * 109.47147 * 330.00575 * 12 10 8 16 16 C 1.54326 * 102.94209 * 35.50253 * 5 4 2 17 17 N 1.47024 * 107.27284 * 337.80384 * 16 5 4 18 18 C 1.34772 * 125.64759 * 178.97535 * 17 16 5 19 19 O 1.21560 * 119.99960 * 174.74287 * 18 17 16 20 20 C 1.47849 * 120.00273 * 354.74903 * 18 17 16 21 21 C 1.39592 * 120.14164 * 7.83229 * 20 18 17 22 22 C 1.37935 * 119.85167 * 179.79369 * 21 20 18 23 23 C 1.38380 * 120.14533 * 0.48550 * 22 21 20 24 24 C 1.38342 * 120.28953 * 359.74813 * 23 22 21 25 25 C 1.50700 * 119.92449 * 180.02562 * 24 23 22 26 26 F 1.39906 * 109.47188 * 120.01925 * 25 24 23 27 27 F 1.39902 * 109.47101 * 240.01676 * 25 24 23 28 28 C 1.37976 * 120.14510 * 0.02562 * 24 23 22 29 29 H 1.08994 * 109.46855 * 299.15777 * 1 2 3 30 30 H 1.09001 * 109.46959 * 59.15587 * 1 2 3 31 31 H 1.08995 * 109.47005 * 179.15825 * 1 2 3 32 32 H 1.08999 * 111.00044 * 86.07895 * 4 2 1 33 33 H 1.08999 * 111.00054 * 322.22449 * 4 2 1 34 34 H 0.97003 * 120.00215 * 340.02017 * 7 5 4 35 35 H 0.97001 * 119.99763 * 179.97438 * 11 10 8 36 36 H 1.08998 * 109.88218 * 97.22531 * 16 5 4 37 37 H 1.09007 * 109.88190 * 218.23500 * 16 5 4 38 38 H 1.08001 * 120.07398 * 0.02562 * 21 20 18 39 39 H 1.08002 * 119.92840 * 180.21034 * 22 21 20 40 40 H 1.07995 * 119.85642 * 179.76211 * 23 22 21 41 41 H 1.08996 * 109.47305 * 0.02562 * 25 24 23 42 42 H 1.08001 * 120.07047 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7759 -1.2277 5 6 3.4778 -1.1997 -0.7343 6 1 4.1968 -0.3923 -0.8723 7 7 3.9250 -2.4129 -1.4232 8 6 5.2568 -2.7292 -1.4574 9 1 5.9776 -2.0843 -0.9770 10 6 5.6811 -3.8758 -2.1150 11 7 4.8028 -4.6615 -2.7010 12 14 7.4988 -4.3033 -2.1684 13 1 7.8432 -5.1478 -0.9965 14 1 7.7958 -5.0471 -3.4189 15 1 8.3022 -3.0550 -2.1323 16 6 3.2494 -1.4769 0.7666 17 7 2.0431 -0.7385 1.1682 18 6 1.4973 -0.7365 2.4005 19 8 0.5516 -0.0129 2.6452 20 6 2.0486 -1.6142 3.4547 21 6 3.2301 -2.3228 3.2299 22 6 3.7415 -3.1367 4.2192 23 6 3.0805 -3.2595 5.4287 24 6 1.9066 -2.5638 5.6561 25 6 1.1939 -2.7031 6.9766 26 9 1.1075 -1.4508 7.5944 27 9 -0.0935 -3.2064 6.7609 28 6 1.3869 -1.7427 4.6766 29 1 -0.3633 0.5007 0.8974 30 1 -0.3633 0.5269 -0.8823 31 1 -0.3633 -1.0275 -0.0151 32 1 2.1399 -0.1263 -2.1001 33 1 1.4511 -1.6480 -1.4409 34 1 3.2777 -2.9920 -1.8550 35 1 5.0993 -5.4625 -3.1608 36 1 3.1014 -2.5446 0.9281 37 1 4.1077 -1.1305 1.3424 38 1 3.7448 -2.2310 2.2848 39 1 4.6574 -3.6828 4.0478 40 1 3.4830 -3.9010 6.1986 41 1 1.7487 -3.3873 7.6186 42 1 0.4701 -1.2004 4.8553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989696809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:33 Heat of formation + Delta-G solvation = -89.206189 kcal Electronic energy + Delta-G solvation = -27450.847449 eV Core-core repulsion = 23259.945407 eV Total energy + Delta-G solvation = -4190.902042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.98492 -47.99160 -41.79434 -39.86064 -38.67932 -35.98024 -34.24466 -33.23779 -32.44638 -31.80249 -30.12376 -27.52595 -26.75212 -25.98679 -25.02947 -22.99336 -22.68165 -21.81109 -20.58344 -19.19185 -18.57350 -18.32489 -18.20878 -17.81314 -17.47346 -16.80945 -16.60077 -16.25640 -15.67411 -15.45036 -15.40099 -15.08270 -14.94529 -14.85125 -14.58423 -14.37750 -14.29848 -13.98394 -13.71275 -13.54491 -13.33012 -13.10554 -12.99863 -12.86859 -12.77857 -12.54495 -12.21684 -12.14184 -12.08614 -11.75840 -11.63364 -11.54084 -11.00455 -10.73579 -10.21221 -10.15386 -9.68187 -9.04624 -7.91923 -5.22359 -0.29950 0.07219 1.53289 1.54598 1.62319 1.67556 1.85237 2.58672 2.64295 2.72589 3.23012 3.24967 3.38385 3.61686 3.73696 3.79373 3.83131 3.87181 4.04956 4.09454 4.15096 4.16701 4.26108 4.37558 4.47925 4.49786 4.58452 4.68909 4.69498 4.79575 4.80827 5.04398 5.09719 5.12038 5.17680 5.24677 5.29321 5.30621 5.48573 5.58069 5.72064 6.27995 6.41359 7.01395 7.36564 8.06979 8.31197 9.30905 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.003565 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.513901 B = 7851.790734 C = 9551.984516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.164 3.836 6 H 0.075 0.925 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.084 0.916 10 C -0.067 4.067 11 N -0.967 5.967 12 Si 0.967 3.033 13 H -0.286 1.286 14 H -0.303 1.303 15 H -0.268 1.268 16 C 0.074 3.926 17 N -0.602 5.602 18 C 0.566 3.434 19 O -0.573 6.573 20 C -0.154 4.154 21 C -0.108 4.108 22 C -0.129 4.129 23 C -0.047 4.047 24 C -0.191 4.191 25 C 0.312 3.688 26 F -0.213 7.213 27 F -0.214 7.214 28 C -0.043 4.043 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 4.303 16.494 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 H 0.107 0.893 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.093 0.907 7 N -0.362 5.362 8 C -0.374 4.374 9 H 0.102 0.898 10 C -0.260 4.260 11 N -0.617 5.617 12 Si 0.797 3.203 13 H -0.213 1.213 14 H -0.230 1.230 15 H -0.193 1.193 16 C -0.051 4.051 17 N -0.334 5.334 18 C 0.357 3.643 19 O -0.455 6.455 20 C -0.157 4.157 21 C -0.125 4.125 22 C -0.146 4.146 23 C -0.065 4.065 24 C -0.192 4.192 25 C 0.259 3.741 26 F -0.195 7.195 27 F -0.196 7.196 28 C -0.063 4.063 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.184 0.816 39 H 0.180 0.820 40 H 0.198 0.802 41 H 0.190 0.810 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.543 4.724 16.679 17.693 hybrid contribution 0.274 -0.528 -0.559 0.816 sum -3.269 4.196 16.120 16.975 Atomic orbital electron populations 1.22057 0.93870 1.01903 1.03582 1.22022 0.95199 0.95886 0.83588 0.89262 1.23062 0.95751 1.00361 0.97121 1.21429 0.94795 0.89534 0.88879 0.90681 1.42520 1.05138 1.25066 1.63509 1.19647 0.85166 1.04906 1.27653 0.89771 1.25493 1.01238 0.98197 1.01077 1.69810 1.34256 1.16022 1.41642 0.85236 0.80691 0.77987 0.76400 1.21265 1.23002 1.19299 1.23509 0.86000 0.96212 0.99338 1.48505 1.28235 1.47798 1.08859 1.18230 0.82336 0.82149 0.81620 1.90669 1.30025 1.43506 1.81278 1.19862 0.98725 1.02056 0.95075 1.23212 0.93984 0.93072 1.02252 1.21588 1.01541 0.98721 0.92780 1.21640 0.91418 0.95337 0.98070 1.20556 0.99525 1.02688 0.96402 1.20918 0.80186 0.81394 0.91562 1.92996 1.96525 1.45917 1.84024 1.92996 1.43303 1.87313 1.95970 1.21014 0.98388 0.95257 0.91614 0.91606 0.89536 0.93929 0.88129 0.91434 0.79176 0.94095 0.91064 0.89876 0.81553 0.82020 0.80190 0.80957 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 8.77 71.98 0.63 -3.68 16 2 C 0.14 3.79 3.74 45.47 0.17 3.96 16 3 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.12 -3.59 6.11 31.99 0.20 -3.40 16 5 C 0.16 5.54 3.59 46.18 0.17 5.71 16 6 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 7 N -0.72 -32.00 5.18 -317.33 -1.64 -33.64 16 8 C -0.24 -11.88 9.98 84.04 0.84 -11.04 16 9 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 11 N -0.97 -55.27 13.06 21.65 0.28 -54.98 16 12 Si 0.97 42.38 29.55 68.60 2.03 44.40 16 13 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 14 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 C 0.07 2.31 4.62 86.73 0.40 2.71 16 17 N -0.60 -18.69 3.24 -802.40 -2.60 -21.29 16 18 C 0.57 19.16 7.53 86.79 0.65 19.82 16 19 O -0.57 -22.04 14.19 -3.90 -0.06 -22.09 16 20 C -0.15 -4.60 5.87 -20.09 -0.12 -4.72 16 21 C -0.11 -2.77 8.60 22.52 0.19 -2.58 16 22 C -0.13 -2.48 10.03 22.23 0.22 -2.26 16 23 C -0.05 -0.73 9.67 22.33 0.22 -0.51 16 24 C -0.19 -3.94 5.37 -19.90 -0.11 -4.04 16 25 C 0.31 5.22 5.45 71.24 0.39 5.61 16 26 F -0.21 -4.59 17.25 44.97 0.78 -3.82 16 27 F -0.21 -4.74 17.25 44.97 0.78 -3.96 16 28 C -0.04 -1.22 9.14 22.52 0.21 -1.01 16 29 H 0.07 2.07 5.93 -2.39 -0.01 2.06 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.07 2.12 7.92 -2.39 -0.02 2.10 16 34 H 0.38 18.36 7.71 -92.71 -0.72 17.64 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.07 2.44 6.55 -2.39 -0.02 2.42 16 37 H 0.08 2.35 6.80 -2.38 -0.02 2.33 16 38 H 0.17 4.45 2.77 -7.15 -0.02 4.43 16 39 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.18 1.07 7.94 -2.91 -0.02 1.05 16 41 H 0.17 1.05 7.87 -2.39 -0.02 1.03 16 42 H 0.12 3.66 7.67 -2.91 -0.02 3.64 16 Total: -1.00 -66.74 351.07 4.43 -62.32 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.34 Total: 31.56 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 4.52 Total: 1.51 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -3.96 Total: -109.92 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.09 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 1.55 Total: -7.78 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -66.74 4.43 -62.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989696809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.891 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds