Wall clock time and date at job start Tue Mar 31 2020 14:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.69928 * 2 1 4 4 C 1.53192 * 109.58521 * 120.35263 * 2 1 3 5 5 H 1.09000 * 109.49642 * 54.44359 * 4 2 1 6 6 N 1.46498 * 109.50041 * 294.37339 * 4 2 1 7 7 C 1.34772 * 119.99827 * 155.05987 * 6 4 2 8 8 O 1.21572 * 120.00456 * 0.02562 * 7 6 4 9 9 C 1.47700 * 119.99829 * 179.97438 * 7 6 4 10 10 C 1.39663 * 120.15438 * 0.02562 * 9 7 6 11 11 C 1.38067 * 119.84930 * 180.02562 * 10 9 7 12 12 F 1.35102 * 119.91629 * 180.02562 * 11 10 9 13 13 C 1.38657 * 120.17125 * 359.97438 * 11 10 9 14 14 C 1.38189 * 120.30973 * 0.02562 * 13 11 10 15 15 C 1.38310 * 120.14831 * 0.25769 * 14 13 11 16 16 F 1.35106 * 120.08556 * 179.71808 * 15 14 13 17 17 C 1.53038 * 109.33704 * 174.40520 * 4 2 1 18 18 C 1.53037 * 109.54239 * 298.68862 * 17 4 2 19 19 C 1.53191 * 109.34182 * 61.31356 * 18 17 4 20 20 N 1.46921 * 108.77478 * 305.38538 * 19 18 17 21 21 C 1.36939 * 120.62836 * 233.63066 * 20 19 18 22 22 H 1.08004 * 120.00047 * 150.14465 * 21 20 19 23 23 C 1.38815 * 120.00005 * 330.13562 * 21 20 19 24 24 N 1.31614 * 119.99811 * 344.51370 * 23 21 20 25 25 Si 1.86797 * 119.99827 * 164.50867 * 23 21 20 26 26 H 1.48503 * 109.47238 * 60.00492 * 25 23 21 27 27 H 1.48502 * 109.47125 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47532 * 300.00442 * 25 23 21 29 29 H 1.08997 * 109.47319 * 299.64572 * 1 2 3 30 30 H 1.09001 * 109.47311 * 59.64479 * 1 2 3 31 31 H 1.08999 * 109.46856 * 179.64450 * 1 2 3 32 32 H 0.97005 * 119.99854 * 335.06910 * 6 4 2 33 33 H 1.08001 * 120.07203 * 359.97438 * 10 9 7 34 34 H 1.07998 * 119.84598 * 180.02562 * 13 11 10 35 35 H 1.07999 * 119.92392 * 179.97438 * 14 13 11 36 36 H 1.09008 * 109.45939 * 58.67609 * 17 4 2 37 37 H 1.08997 * 109.45731 * 178.62964 * 17 4 2 38 38 H 1.09007 * 109.46681 * 301.36015 * 18 17 4 39 39 H 1.09003 * 109.52714 * 181.30286 * 18 17 4 40 40 H 1.08995 * 109.58556 * 185.59507 * 19 18 17 41 41 H 1.08993 * 109.70034 * 65.23963 * 19 18 17 42 42 H 0.97000 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 1 1.6026 -1.7251 1.2916 6 7 1.6706 0.0268 2.4435 7 6 1.5484 -0.6046 3.6279 8 8 1.7482 -1.8015 3.7023 9 6 1.1729 0.1578 4.8359 10 6 0.9432 1.5330 4.7544 11 6 0.5930 2.2396 5.8877 12 9 0.3699 3.5698 5.8102 13 6 0.4686 1.5873 7.1049 14 6 0.6943 0.2269 7.1934 15 6 1.0515 -0.4927 6.0675 16 9 1.2774 -1.8217 6.1566 17 6 3.5674 -0.8486 1.1706 18 6 3.9569 -1.6656 -0.0635 19 6 3.4651 -0.9469 -1.3237 20 7 2.0226 -0.6995 -1.1945 21 6 1.1537 -1.1135 -2.1685 22 1 0.1399 -1.3809 -1.9097 23 6 1.5760 -1.1893 -3.4887 24 7 2.6865 -0.5883 -3.8600 25 14 0.5681 -2.1444 -4.7383 26 1 -0.7925 -1.5567 -4.8301 27 1 1.2293 -2.0730 -6.0661 28 1 0.4667 -3.5633 -4.3120 29 1 -0.3634 0.5083 0.8931 30 1 -0.3634 0.5193 -0.8868 31 1 -0.3633 -1.0276 -0.0064 32 1 1.5114 0.9818 2.3843 33 1 1.0400 2.0426 3.8071 34 1 0.1940 2.1451 7.9880 35 1 0.5961 -0.2748 8.1447 36 1 4.0066 0.1466 1.1001 37 1 3.9372 -1.3457 2.0674 38 1 3.4984 -2.6528 -0.0052 39 1 5.0412 -1.7700 -0.1039 40 1 3.6519 -1.5717 -2.1971 41 1 3.9901 0.0019 -1.4342 42 1 2.9817 -0.6415 -4.7824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993449607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:57 Heat of formation + Delta-G solvation = -78.248066 kcal Electronic energy + Delta-G solvation = -27716.658440 eV Core-core repulsion = 23526.231578 eV Total energy + Delta-G solvation = -4190.426862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.31237 -49.08495 -40.23934 -38.67943 -37.49956 -34.44818 -32.80324 -32.11162 -31.42679 -30.37772 -29.14630 -26.34015 -25.12006 -24.62202 -23.21254 -22.04619 -20.74218 -20.52102 -19.60008 -18.39693 -17.73846 -17.50139 -16.47834 -16.31066 -16.25110 -15.64051 -15.60876 -14.97545 -14.88283 -14.67002 -14.58424 -14.00308 -13.79520 -13.69083 -13.51821 -13.27773 -12.88736 -12.83981 -12.57889 -12.23024 -11.86162 -11.74371 -11.55879 -11.14629 -10.93398 -10.77159 -10.61460 -10.33338 -10.17938 -10.07310 -10.01054 -9.76558 -9.68583 -9.41111 -8.99990 -8.73977 -8.47315 -6.69520 -5.81770 -3.26723 0.19182 0.52733 2.49877 3.08766 3.33786 3.37388 3.43286 3.45165 3.68201 3.76004 4.08152 4.26324 4.46752 4.56598 4.69271 5.07457 5.26803 5.33276 5.34800 5.43859 5.48228 5.52041 5.58060 5.59504 5.75298 5.93198 6.03500 6.17583 6.25835 6.29967 6.36857 6.49483 6.56571 6.66511 6.72456 6.81193 6.94975 7.02653 7.37316 7.57882 7.64482 7.79613 8.23696 8.42751 9.17790 9.80185 10.36703 11.26980 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.003046 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.302798 B = 9189.519840 C = 9600.178128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.028 0.972 4 C 0.130 3.870 5 H 0.089 0.911 6 N -0.709 5.709 7 C 0.553 3.447 8 O -0.520 6.520 9 C -0.138 4.138 10 C -0.094 4.094 11 C 0.082 3.918 12 F -0.132 7.132 13 C -0.103 4.103 14 C -0.136 4.136 15 C 0.149 3.851 16 F -0.109 7.109 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.170 3.830 20 N -0.581 5.581 21 C -0.255 4.255 22 H 0.070 0.930 23 C 0.006 3.994 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.395 0.605 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 6.168 20.957 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.107 0.893 6 N -0.359 5.359 7 C 0.338 3.662 8 O -0.397 6.397 9 C -0.142 4.142 10 C -0.114 4.114 11 C 0.063 3.937 12 F -0.110 7.110 13 C -0.122 4.122 14 C -0.154 4.154 15 C 0.128 3.872 16 F -0.087 7.087 17 C -0.156 4.156 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.304 5.304 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.732 3.268 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.209 1.209 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.230 0.770 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.038 0.962 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.472 5.299 20.762 21.570 hybrid contribution -0.476 0.119 -0.676 0.835 sum -2.948 5.417 20.086 21.012 Atomic orbital electron populations 1.21827 0.95595 1.01820 1.00233 1.20564 0.93285 0.93564 0.86619 0.95436 1.21892 0.95329 0.96941 0.83352 0.89298 1.46061 1.69492 1.12196 1.08200 1.17824 0.78380 0.87113 0.82872 1.90860 1.49606 1.13931 1.85286 1.20088 1.06101 0.93780 0.94236 1.21242 0.98423 0.92709 0.98977 1.17469 1.03551 0.78265 0.94420 1.91553 1.92298 1.30171 1.96990 1.21167 0.99464 0.94304 0.97240 1.21018 1.02083 0.93846 0.98498 1.17714 0.97857 0.78685 0.92927 1.91633 1.90996 1.29435 1.96601 1.21766 0.95153 1.00173 0.98491 1.22183 0.99303 0.99733 0.96757 1.20827 0.83083 0.97214 0.94444 1.44016 1.03157 1.65058 1.18202 1.19119 0.95236 1.38084 0.86012 0.91247 1.25084 0.97876 0.99358 0.96964 1.70014 1.24088 1.43565 1.16875 0.86378 0.79577 0.80295 0.80552 1.20852 1.21645 1.20943 0.94372 0.91652 0.92566 0.77010 0.83183 0.83235 0.82960 0.92683 0.93089 0.92450 0.92918 0.89462 0.96216 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.84 37.16 0.29 -2.20 16 2 C 0.17 3.29 3.03 -67.60 -0.21 3.08 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.13 2.31 1.99 -67.81 -0.14 2.18 16 5 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 6 N -0.71 -10.11 4.53 -54.68 -0.25 -10.36 16 7 C 0.55 8.40 7.74 -12.40 -0.10 8.30 16 8 O -0.52 -9.98 15.00 5.30 0.08 -9.90 16 9 C -0.14 -1.62 5.88 -104.91 -0.62 -2.24 16 10 C -0.09 -0.86 9.52 -39.11 -0.37 -1.23 16 11 C 0.08 0.69 7.29 -39.49 -0.29 0.40 16 12 F -0.13 -1.17 17.26 2.25 0.04 -1.13 16 13 C -0.10 -0.69 10.01 -39.44 -0.39 -1.08 16 14 C -0.14 -1.02 10.01 -39.57 -0.40 -1.42 16 15 C 0.15 1.68 7.28 -38.97 -0.28 1.39 16 16 F -0.11 -1.51 15.55 2.25 0.04 -1.48 16 17 C -0.12 -2.08 5.46 -26.69 -0.15 -2.23 16 18 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 19 C 0.17 3.96 5.28 -3.71 -0.02 3.94 16 20 N -0.58 -13.94 2.99 -164.78 -0.49 -14.43 16 21 C -0.26 -6.71 8.58 -15.06 -0.13 -6.84 16 22 H 0.07 1.79 6.23 -52.48 -0.33 1.46 16 23 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 24 N -0.90 -25.51 11.23 55.49 0.62 -24.89 16 25 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.04 0.56 7.78 -51.93 -0.40 0.16 16 30 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 31 H 0.06 1.08 7.40 -51.93 -0.38 0.69 16 32 H 0.40 4.49 6.64 -40.82 -0.27 4.21 16 33 H 0.15 1.12 6.40 -52.49 -0.34 0.78 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 2.28 6.15 -51.93 -0.32 1.96 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -31.10 347.51 -8.14 -39.24 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.35 Total: 2.12 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.04 Total: -0.75 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.12 Total: -49.68 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.07 Total: -2.61 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.10 -8.14 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993449607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.003 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds