Wall clock time and date at job start Tue Mar 31 2020 14:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.69928 * 2 1 4 4 C 1.53192 * 109.58521 * 120.35263 * 2 1 3 5 5 H 1.09000 * 109.49642 * 54.44359 * 4 2 1 6 6 N 1.46498 * 109.50041 * 294.37339 * 4 2 1 7 7 C 1.34772 * 119.99827 * 155.05987 * 6 4 2 8 8 O 1.21572 * 120.00456 * 0.02562 * 7 6 4 9 9 C 1.47700 * 119.99829 * 179.97438 * 7 6 4 10 10 C 1.39663 * 120.15438 * 0.02562 * 9 7 6 11 11 C 1.38067 * 119.84930 * 180.02562 * 10 9 7 12 12 F 1.35102 * 119.91629 * 180.02562 * 11 10 9 13 13 C 1.38657 * 120.17125 * 359.97438 * 11 10 9 14 14 C 1.38189 * 120.30973 * 0.02562 * 13 11 10 15 15 C 1.38310 * 120.14831 * 0.25769 * 14 13 11 16 16 F 1.35106 * 120.08556 * 179.71808 * 15 14 13 17 17 C 1.53038 * 109.33704 * 174.40520 * 4 2 1 18 18 C 1.53037 * 109.54239 * 298.68862 * 17 4 2 19 19 C 1.53191 * 109.34182 * 61.31356 * 18 17 4 20 20 N 1.46921 * 108.77478 * 305.38538 * 19 18 17 21 21 C 1.36939 * 120.62836 * 233.63066 * 20 19 18 22 22 H 1.08004 * 120.00047 * 150.14465 * 21 20 19 23 23 C 1.38815 * 120.00005 * 330.13562 * 21 20 19 24 24 N 1.31614 * 119.99811 * 344.51370 * 23 21 20 25 25 Si 1.86797 * 119.99827 * 164.50867 * 23 21 20 26 26 H 1.48503 * 109.47238 * 60.00492 * 25 23 21 27 27 H 1.48502 * 109.47125 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47532 * 300.00442 * 25 23 21 29 29 H 1.08997 * 109.47319 * 299.64572 * 1 2 3 30 30 H 1.09001 * 109.47311 * 59.64479 * 1 2 3 31 31 H 1.08999 * 109.46856 * 179.64450 * 1 2 3 32 32 H 0.97005 * 119.99854 * 335.06910 * 6 4 2 33 33 H 1.08001 * 120.07203 * 359.97438 * 10 9 7 34 34 H 1.07998 * 119.84598 * 180.02562 * 13 11 10 35 35 H 1.07999 * 119.92392 * 179.97438 * 14 13 11 36 36 H 1.09008 * 109.45939 * 58.67609 * 17 4 2 37 37 H 1.08997 * 109.45731 * 178.62964 * 17 4 2 38 38 H 1.09007 * 109.46681 * 301.36015 * 18 17 4 39 39 H 1.09003 * 109.52714 * 181.30286 * 18 17 4 40 40 H 1.08995 * 109.58556 * 185.59507 * 19 18 17 41 41 H 1.08993 * 109.70034 * 65.23963 * 19 18 17 42 42 H 0.97000 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 1 1.6026 -1.7251 1.2916 6 7 1.6706 0.0268 2.4435 7 6 1.5484 -0.6046 3.6279 8 8 1.7482 -1.8015 3.7023 9 6 1.1729 0.1578 4.8359 10 6 0.9432 1.5330 4.7544 11 6 0.5930 2.2396 5.8877 12 9 0.3699 3.5698 5.8102 13 6 0.4686 1.5873 7.1049 14 6 0.6943 0.2269 7.1934 15 6 1.0515 -0.4927 6.0675 16 9 1.2774 -1.8217 6.1566 17 6 3.5674 -0.8486 1.1706 18 6 3.9569 -1.6656 -0.0635 19 6 3.4651 -0.9469 -1.3237 20 7 2.0226 -0.6995 -1.1945 21 6 1.1537 -1.1135 -2.1685 22 1 0.1399 -1.3809 -1.9097 23 6 1.5760 -1.1893 -3.4887 24 7 2.6865 -0.5883 -3.8600 25 14 0.5681 -2.1444 -4.7383 26 1 -0.7925 -1.5567 -4.8301 27 1 1.2293 -2.0730 -6.0661 28 1 0.4667 -3.5633 -4.3120 29 1 -0.3634 0.5083 0.8931 30 1 -0.3634 0.5193 -0.8868 31 1 -0.3633 -1.0276 -0.0064 32 1 1.5114 0.9818 2.3843 33 1 1.0400 2.0426 3.8071 34 1 0.1940 2.1451 7.9880 35 1 0.5961 -0.2748 8.1447 36 1 4.0066 0.1466 1.1001 37 1 3.9372 -1.3457 2.0674 38 1 3.4984 -2.6528 -0.0052 39 1 5.0412 -1.7700 -0.1039 40 1 3.6519 -1.5717 -2.1971 41 1 3.9901 0.0019 -1.4342 42 1 2.9817 -0.6415 -4.7824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993449607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:56 Heat of formation + Delta-G solvation = -96.594340 kcal Electronic energy + Delta-G solvation = -27717.453994 eV Core-core repulsion = 23526.231578 eV Total energy + Delta-G solvation = -4191.222416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.98757 -49.96888 -41.39793 -39.75964 -38.85883 -35.99347 -34.39066 -33.54172 -32.70393 -31.10392 -30.73599 -27.93445 -26.90722 -25.62206 -24.17462 -23.35120 -22.35744 -21.72658 -21.15690 -19.43653 -18.57962 -18.34557 -18.17135 -17.30905 -17.18276 -17.06624 -16.56851 -16.41866 -15.94533 -15.78031 -15.60706 -15.46817 -15.37406 -15.02305 -14.70535 -14.53516 -14.28931 -14.16317 -13.64980 -13.36778 -13.26417 -12.98424 -12.79560 -12.73293 -12.55996 -12.54721 -12.39401 -12.03359 -11.83976 -11.79943 -11.64260 -11.25410 -11.01901 -10.52821 -10.47285 -10.08867 -9.70033 -8.65478 -7.86201 -5.32588 -0.56408 -0.14135 1.46893 1.49962 1.55506 1.60886 1.93347 2.42636 2.52916 2.98196 3.03087 3.29598 3.39310 3.52325 3.64149 3.85559 3.88979 3.99275 4.02925 4.18738 4.33998 4.42157 4.48812 4.60009 4.68951 4.75544 4.83003 4.85661 4.87872 4.90377 4.95006 5.01865 5.11544 5.17845 5.25345 5.42133 5.45325 5.56390 5.60736 5.70278 5.75529 6.41032 6.43211 7.09084 7.16572 7.85905 8.37668 9.20747 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.003046 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.302798 B = 9189.519840 C = 9600.178128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.037 0.963 4 C 0.146 3.854 5 H 0.059 0.941 6 N -0.698 5.698 7 C 0.554 3.446 8 O -0.568 6.568 9 C -0.157 4.157 10 C -0.089 4.089 11 C 0.081 3.919 12 F -0.132 7.132 13 C -0.080 4.080 14 C -0.121 4.121 15 C 0.124 3.876 16 F -0.132 7.132 17 C -0.110 4.110 18 C -0.130 4.130 19 C 0.177 3.823 20 N -0.600 5.600 21 C -0.257 4.257 22 H 0.071 0.929 23 C -0.046 4.046 24 N -0.932 5.932 25 Si 0.960 3.040 26 H -0.274 1.274 27 H -0.295 1.295 28 H -0.283 1.283 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.412 0.588 33 H 0.165 0.835 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.006 0.994 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 7.885 23.679 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 H 0.055 0.945 4 C 0.040 3.960 5 H 0.077 0.923 6 N -0.349 5.349 7 C 0.341 3.659 8 O -0.448 6.448 9 C -0.161 4.161 10 C -0.108 4.108 11 C 0.061 3.939 12 F -0.111 7.111 13 C -0.099 4.099 14 C -0.140 4.140 15 C 0.104 3.896 16 F -0.110 7.110 17 C -0.148 4.148 18 C -0.169 4.169 19 C 0.051 3.949 20 N -0.324 5.324 21 C -0.387 4.387 22 H 0.089 0.911 23 C -0.241 4.241 24 N -0.578 5.578 25 Si 0.789 3.211 26 H -0.200 1.200 27 H -0.221 1.221 28 H -0.209 1.209 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.250 0.750 33 H 0.182 0.818 34 H 0.204 0.796 35 H 0.200 0.800 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.024 0.976 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.518 7.059 23.516 24.803 hybrid contribution -0.188 -0.331 -1.393 1.444 sum -3.706 6.728 22.123 23.419 Atomic orbital electron populations 1.21743 0.94416 1.01116 1.01357 1.20721 0.94312 0.93579 0.85580 0.94526 1.21384 0.95089 0.95606 0.83939 0.92274 1.45794 1.69281 1.12780 1.07064 1.18316 0.77132 0.86737 0.83706 1.90835 1.51757 1.16134 1.86046 1.19768 1.08917 0.94586 0.92876 1.21305 0.97749 0.91541 1.00229 1.17575 1.03357 0.78192 0.94757 1.91562 1.92278 1.30242 1.97018 1.21582 0.96687 0.93837 0.97801 1.21312 1.00315 0.94014 0.98333 1.18171 0.99283 0.78067 0.94111 1.91573 1.91468 1.31253 1.96749 1.21688 0.95151 1.00538 0.97455 1.22022 1.00389 0.98722 0.95784 1.20620 0.83179 0.96171 0.94916 1.44251 1.03154 1.65886 1.19086 1.19403 0.95561 1.37124 0.86634 0.91101 1.25754 0.99069 1.00630 0.98672 1.70152 1.25662 1.45215 1.16742 0.85452 0.78525 0.78948 0.78191 1.19960 1.22088 1.20937 0.90664 0.93067 0.94116 0.75021 0.81777 0.79555 0.80010 0.91265 0.92745 0.93811 0.90833 0.92832 0.97569 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.84 71.98 0.56 -4.01 16 2 C 0.16 6.41 3.03 44.98 0.14 6.54 16 3 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 4 C 0.15 5.16 1.99 45.07 0.09 5.25 16 5 H 0.06 2.48 7.58 -2.39 -0.02 2.47 16 6 N -0.70 -19.09 4.53 -445.19 -2.01 -21.10 16 7 C 0.55 16.57 7.74 86.74 0.67 17.24 16 8 O -0.57 -22.24 15.00 -3.94 -0.06 -22.30 16 9 C -0.16 -3.48 5.88 -20.05 -0.12 -3.60 16 10 C -0.09 -1.39 9.52 22.57 0.21 -1.17 16 11 C 0.08 1.04 7.29 22.33 0.16 1.21 16 12 F -0.13 -1.86 17.26 44.97 0.78 -1.09 16 13 C -0.08 -0.71 10.01 22.36 0.22 -0.48 16 14 C -0.12 -1.41 10.01 22.28 0.22 -1.18 16 15 C 0.12 2.61 7.28 22.67 0.17 2.78 16 16 F -0.13 -3.68 15.55 44.97 0.70 -2.98 16 17 C -0.11 -3.83 5.46 30.62 0.17 -3.66 16 18 C -0.13 -5.09 6.08 30.67 0.19 -4.91 16 19 C 0.18 8.45 5.28 86.36 0.46 8.91 16 20 N -0.60 -29.28 2.99 -675.24 -2.02 -31.30 16 21 C -0.26 -13.76 8.58 84.03 0.72 -13.04 16 22 H 0.07 3.70 6.23 -2.91 -0.02 3.68 16 23 C -0.05 -2.51 4.94 84.86 0.42 -2.09 16 24 N -0.93 -54.23 11.23 21.65 0.24 -53.99 16 25 Si 0.96 44.73 29.58 68.60 2.03 46.76 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 29 H 0.07 2.07 7.78 -2.39 -0.02 2.05 16 30 H 0.05 1.95 7.67 -2.39 -0.02 1.93 16 31 H 0.04 1.55 7.40 -2.39 -0.02 1.54 16 32 H 0.41 8.43 6.64 -92.70 -0.62 7.81 16 33 H 0.16 1.95 6.40 -2.91 -0.02 1.93 16 34 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.05 2.91 6.15 -2.39 -0.01 2.90 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -70.54 347.51 4.39 -66.15 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.45 Total: 12.06 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 4.28 Total: 7.78 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.79 Total: -106.39 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.48 Total: -4.07 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.54 4.39 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993449607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.443 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds