Wall clock time and date at job start Tue Mar 31 2020 15:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47227 * 2 1 4 4 C 1.50707 * 109.47216 * 120.00141 * 2 1 3 5 5 O 1.21276 * 120.00309 * 119.99586 * 4 2 1 6 6 N 1.34779 * 119.99363 * 300.00319 * 4 2 1 7 7 C 1.46505 * 119.99611 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.88809 * 31.11377 * 7 6 4 9 9 C 1.55152 * 111.00603 * 154.99875 * 7 6 4 10 10 C 1.54323 * 102.94209 * 82.56799 * 9 7 6 11 11 N 1.47016 * 107.26927 * 22.19778 * 10 9 7 12 12 C 1.36941 * 125.64457 * 181.02384 * 11 10 9 13 13 H 1.08004 * 120.00013 * 189.17446 * 12 11 10 14 14 C 1.38806 * 120.00226 * 9.17277 * 12 11 10 15 15 N 1.31624 * 119.99970 * 195.42461 * 14 12 11 16 16 Si 1.86805 * 120.00050 * 15.69232 * 14 12 11 17 17 H 1.48502 * 109.46961 * 174.14811 * 16 14 12 18 18 H 1.48495 * 109.47201 * 294.14623 * 16 14 12 19 19 H 1.48498 * 109.46519 * 54.14967 * 16 14 12 20 20 C 1.47420 * 108.70545 * 1.28033 * 11 10 9 21 21 C 1.50702 * 109.47477 * 239.99893 * 2 1 3 22 22 C 1.38228 * 119.98661 * 299.72855 * 21 2 1 23 23 C 1.38184 * 120.04840 * 179.76349 * 22 21 2 24 24 C 1.38488 * 120.02857 * 0.51034 * 23 22 21 25 25 F 1.35100 * 120.01941 * 179.76802 * 24 23 22 26 26 C 1.38401 * 119.97257 * 359.74005 * 24 23 22 27 27 C 1.38445 * 119.95063 * 0.02562 * 26 24 23 28 28 F 1.35098 * 120.01267 * 180.02562 * 27 26 24 29 29 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47096 * 300.00211 * 1 2 3 31 31 H 1.09004 * 109.46858 * 60.00116 * 1 2 3 32 32 H 0.96998 * 120.00797 * 359.97438 * 6 4 2 33 33 H 1.09002 * 110.71832 * 324.20943 * 9 7 6 34 34 H 1.09002 * 110.72300 * 200.93715 * 9 7 6 35 35 H 1.08996 * 109.88658 * 262.77269 * 10 9 7 36 36 H 1.09006 * 110.00519 * 141.68544 * 10 9 7 37 37 H 0.96994 * 120.00197 * 2.67238 * 15 14 12 38 38 H 1.08999 * 110.36346 * 94.48637 * 20 11 10 39 39 H 1.08997 * 110.37069 * 216.80383 * 20 11 10 40 40 H 1.08005 * 119.97410 * 0.02562 * 22 21 2 41 41 H 1.08007 * 119.98872 * 180.24878 * 23 22 21 42 42 H 1.08003 * 120.02469 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 1 3.1646 -1.4018 3.4649 9 6 2.2610 0.0253 4.8629 10 6 0.8087 0.0256 5.3847 11 7 0.1742 -1.2128 4.9103 12 6 -1.1234 -1.5840 5.1419 13 1 -1.4559 -2.5776 4.8796 14 6 -2.0115 -0.6835 5.7138 15 7 -3.1514 -1.1109 6.2141 16 14 -1.5921 1.1361 5.7668 17 1 -2.7536 1.8966 6.2939 18 1 -0.4187 1.3481 6.6519 19 1 -1.2707 1.6100 4.3966 20 6 1.1679 -1.9916 4.1493 21 6 2.0324 -0.7104 -1.2304 22 6 1.7030 -2.0355 -1.4461 23 6 2.1589 -2.6867 -2.5763 24 6 2.9553 -2.0155 -3.4891 25 9 3.4049 -2.6538 -4.5917 26 6 3.2901 -0.6903 -3.2716 27 6 2.8287 -0.0374 -2.1414 28 9 3.1543 1.2563 -1.9281 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1493 0.5389 2.5436 33 1 2.5563 1.0248 4.5436 34 1 2.9438 -0.3553 5.6226 35 1 0.2738 0.8903 4.9920 36 1 0.8040 0.0507 6.4745 37 1 -3.3540 -2.0595 6.2182 38 1 1.6533 -2.7224 4.7962 39 1 0.6933 -2.4888 3.3034 40 1 1.0853 -2.5609 -0.7327 41 1 1.8976 -3.7209 -2.7459 42 1 3.9107 -0.1659 -3.9832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016305576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:31 Heat of formation + Delta-G solvation = -68.969755 kcal Electronic energy + Delta-G solvation = -27678.268066 eV Core-core repulsion = 23488.243542 eV Total energy + Delta-G solvation = -4190.024524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.27679 -49.23796 -40.36072 -38.90975 -37.58106 -34.34134 -33.88117 -32.09586 -31.05028 -29.73508 -29.15604 -28.06985 -25.03086 -23.97366 -23.40059 -22.52991 -20.98878 -20.39745 -19.76998 -18.50161 -17.79356 -17.52800 -16.83061 -16.48610 -16.18390 -15.91719 -15.58626 -15.53972 -15.29411 -14.94310 -14.71923 -14.39567 -14.07771 -13.89260 -13.42988 -13.13096 -13.03836 -12.84514 -12.65031 -12.45226 -12.17298 -11.96989 -11.83692 -11.49321 -11.43031 -11.29642 -11.16144 -11.03856 -10.93213 -10.15232 -9.70894 -9.44408 -9.28522 -9.04461 -8.90943 -8.85524 -8.68846 -7.08003 -6.35735 -3.25358 0.67668 0.79353 2.68909 3.01375 3.34410 3.38357 3.39620 3.60219 3.64336 4.10518 4.22625 4.31284 4.55863 4.57044 4.74542 4.87924 4.90726 4.96098 5.00976 5.05561 5.31001 5.35059 5.44097 5.49886 5.56029 5.60946 5.64737 5.68924 5.74504 5.81857 5.99697 6.00939 6.07061 6.08010 6.19993 6.37906 6.48808 6.50664 6.66577 6.80735 7.58950 7.67321 8.29106 8.31142 9.00456 9.51801 10.18478 11.15430 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.003135 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.308581 B = 8930.530448 C = 9024.292188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 H 0.109 0.891 4 C 0.521 3.479 5 O -0.539 6.539 6 N -0.704 5.704 7 C 0.125 3.875 8 H 0.097 0.903 9 C -0.137 4.137 10 C 0.108 3.892 11 N -0.611 5.611 12 C -0.321 4.321 13 H 0.077 0.923 14 C -0.024 4.024 15 N -0.929 5.929 16 Si 1.076 2.924 17 H -0.303 1.303 18 H -0.287 1.287 19 H -0.300 1.300 20 C 0.127 3.873 21 C -0.104 4.104 22 C -0.025 4.025 23 C -0.162 4.162 24 C 0.127 3.873 25 F -0.134 7.134 26 C -0.195 4.195 27 C 0.135 3.865 28 F -0.130 7.130 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.262 0.738 38 H 0.034 0.966 39 H 0.048 0.952 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.569 3.445 -17.035 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.127 0.873 4 C 0.306 3.694 5 O -0.416 6.416 6 N -0.354 5.354 7 C 0.020 3.980 8 H 0.115 0.885 9 C -0.175 4.175 10 C -0.017 4.017 11 N -0.339 5.339 12 C -0.448 4.448 13 H 0.095 0.905 14 C -0.223 4.223 15 N -0.570 5.570 16 Si 0.911 3.089 17 H -0.231 1.231 18 H -0.215 1.215 19 H -0.230 1.230 20 C 0.000 4.000 21 C -0.106 4.106 22 C -0.044 4.044 23 C -0.181 4.181 24 C 0.107 3.893 25 F -0.112 7.112 26 C -0.215 4.215 27 C 0.115 3.885 28 F -0.109 7.109 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.237 0.763 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.422 4.195 -16.644 21.188 hybrid contribution 0.493 -1.002 -0.596 1.266 sum 12.916 3.193 -17.240 21.777 Atomic orbital electron populations 1.21826 0.90912 1.03745 1.03508 1.20230 0.98529 1.00541 0.90219 0.87291 1.20230 0.80178 0.84604 0.84339 1.90696 1.38164 1.26112 1.86666 1.45804 1.52805 1.31788 1.05049 1.22228 0.98135 0.94091 0.83574 0.88507 1.22913 0.98219 0.99389 0.97014 1.22004 0.91080 0.90394 0.98220 1.44808 1.08736 1.19250 1.61088 1.20139 0.84337 0.99559 1.40742 0.90530 1.25826 0.94121 1.05100 0.97288 1.70898 1.24966 1.16936 1.44199 0.83732 0.73619 0.76200 0.75391 1.23105 1.21483 1.22951 1.22020 0.90295 0.93140 0.94503 1.19438 0.99978 0.95263 0.95919 1.20739 0.96248 0.92326 0.95046 1.21198 1.00386 1.01664 0.94874 1.17290 0.97030 0.90283 0.84686 1.91523 1.87388 1.81573 1.50756 1.20907 1.06205 0.94649 0.99714 1.17054 0.97450 0.79052 0.94910 1.91506 1.90886 1.33857 1.94620 0.91367 0.90753 0.91153 0.76320 0.90820 0.89778 0.95595 0.93512 0.92847 0.94792 0.93351 0.83879 0.83932 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.91 37.16 0.33 -1.18 16 2 C -0.07 -0.85 2.88 -92.92 -0.27 -1.11 16 3 H 0.11 1.11 7.12 -51.93 -0.37 0.74 16 4 C 0.52 7.49 7.02 -10.98 -0.08 7.41 16 5 O -0.54 -9.21 14.73 5.56 0.08 -9.13 16 6 N -0.70 -10.27 5.09 -51.61 -0.26 -10.53 16 7 C 0.13 1.98 3.43 -65.66 -0.23 1.76 16 8 H 0.10 1.48 7.54 -51.93 -0.39 1.09 16 9 C -0.14 -2.06 6.54 -24.90 -0.16 -2.22 16 10 C 0.11 2.17 4.62 -3.07 -0.01 2.15 16 11 N -0.61 -14.16 3.33 -169.94 -0.57 -14.73 16 12 C -0.32 -8.90 10.55 -15.06 -0.16 -9.06 16 13 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 14 C -0.02 -0.69 5.49 -17.43 -0.10 -0.79 16 15 N -0.93 -28.68 13.71 55.49 0.76 -27.92 16 16 Si 1.08 25.69 24.54 -169.99 -4.17 21.52 16 17 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 18 H -0.29 -6.28 5.45 56.52 0.31 -5.97 16 19 H -0.30 -6.63 6.84 56.52 0.39 -6.24 16 20 C 0.13 2.49 6.95 -2.41 -0.02 2.48 16 21 C -0.10 -1.21 4.41 -104.55 -0.46 -1.67 16 22 C -0.03 -0.28 7.92 -39.60 -0.31 -0.60 16 23 C -0.16 -1.63 10.02 -39.51 -0.40 -2.03 16 24 C 0.13 1.31 7.30 -39.43 -0.29 1.02 16 25 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 26 C -0.20 -1.96 10.01 -39.44 -0.39 -2.36 16 27 C 0.13 1.50 7.24 -39.43 -0.29 1.21 16 28 F -0.13 -1.46 16.19 2.25 0.04 -1.42 16 29 H 0.07 0.76 7.40 -51.93 -0.38 0.37 16 30 H 0.07 0.83 7.56 -51.93 -0.39 0.43 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 5.51 8.09 -40.82 -0.33 5.18 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.03 0.55 3.72 -51.93 -0.19 0.35 16 36 H 0.05 1.00 6.83 -51.93 -0.35 0.65 16 37 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.14 1.59 7.51 -52.48 -0.39 1.20 16 41 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -32.23 346.94 -7.13 -39.37 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.45 Total: 3.96 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.83 Total: -4.98 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.07 Total: -53.18 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.17 Total: 21.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.23 -7.13 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016305576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.603 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds