Wall clock time and date at job start Tue Mar 31 2020 15:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47227 * 2 1 4 4 C 1.50707 * 109.47216 * 120.00141 * 2 1 3 5 5 O 1.21276 * 120.00309 * 119.99586 * 4 2 1 6 6 N 1.34779 * 119.99363 * 300.00319 * 4 2 1 7 7 C 1.46505 * 119.99611 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.88809 * 31.11377 * 7 6 4 9 9 C 1.55152 * 111.00603 * 154.99875 * 7 6 4 10 10 C 1.54323 * 102.94209 * 82.56799 * 9 7 6 11 11 N 1.47016 * 107.26927 * 22.19778 * 10 9 7 12 12 C 1.36941 * 125.64457 * 181.02384 * 11 10 9 13 13 H 1.08004 * 120.00013 * 189.17446 * 12 11 10 14 14 C 1.38806 * 120.00226 * 9.17277 * 12 11 10 15 15 N 1.31624 * 119.99970 * 195.42461 * 14 12 11 16 16 Si 1.86805 * 120.00050 * 15.69232 * 14 12 11 17 17 H 1.48502 * 109.46961 * 174.14811 * 16 14 12 18 18 H 1.48495 * 109.47201 * 294.14623 * 16 14 12 19 19 H 1.48498 * 109.46519 * 54.14967 * 16 14 12 20 20 C 1.47420 * 108.70545 * 1.28033 * 11 10 9 21 21 C 1.50702 * 109.47477 * 239.99893 * 2 1 3 22 22 C 1.38228 * 119.98661 * 299.72855 * 21 2 1 23 23 C 1.38184 * 120.04840 * 179.76349 * 22 21 2 24 24 C 1.38488 * 120.02857 * 0.51034 * 23 22 21 25 25 F 1.35100 * 120.01941 * 179.76802 * 24 23 22 26 26 C 1.38401 * 119.97257 * 359.74005 * 24 23 22 27 27 C 1.38445 * 119.95063 * 0.02562 * 26 24 23 28 28 F 1.35098 * 120.01267 * 180.02562 * 27 26 24 29 29 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47096 * 300.00211 * 1 2 3 31 31 H 1.09004 * 109.46858 * 60.00116 * 1 2 3 32 32 H 0.96998 * 120.00797 * 359.97438 * 6 4 2 33 33 H 1.09002 * 110.71832 * 324.20943 * 9 7 6 34 34 H 1.09002 * 110.72300 * 200.93715 * 9 7 6 35 35 H 1.08996 * 109.88658 * 262.77269 * 10 9 7 36 36 H 1.09006 * 110.00519 * 141.68544 * 10 9 7 37 37 H 0.96994 * 120.00197 * 2.67238 * 15 14 12 38 38 H 1.08999 * 110.36346 * 94.48637 * 20 11 10 39 39 H 1.08997 * 110.37069 * 216.80383 * 20 11 10 40 40 H 1.08005 * 119.97410 * 0.02562 * 22 21 2 41 41 H 1.08007 * 119.98872 * 180.24878 * 23 22 21 42 42 H 1.08003 * 120.02469 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 1 3.1646 -1.4018 3.4649 9 6 2.2610 0.0253 4.8629 10 6 0.8087 0.0256 5.3847 11 7 0.1742 -1.2128 4.9103 12 6 -1.1234 -1.5840 5.1419 13 1 -1.4559 -2.5776 4.8796 14 6 -2.0115 -0.6835 5.7138 15 7 -3.1514 -1.1109 6.2141 16 14 -1.5921 1.1361 5.7668 17 1 -2.7536 1.8966 6.2939 18 1 -0.4187 1.3481 6.6519 19 1 -1.2707 1.6100 4.3966 20 6 1.1679 -1.9916 4.1493 21 6 2.0324 -0.7104 -1.2304 22 6 1.7030 -2.0355 -1.4461 23 6 2.1589 -2.6867 -2.5763 24 6 2.9553 -2.0155 -3.4891 25 9 3.4049 -2.6538 -4.5917 26 6 3.2901 -0.6903 -3.2716 27 6 2.8287 -0.0374 -2.1414 28 9 3.1543 1.2563 -1.9281 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1493 0.5389 2.5436 33 1 2.5563 1.0248 4.5436 34 1 2.9438 -0.3553 5.6226 35 1 0.2738 0.8903 4.9920 36 1 0.8040 0.0507 6.4745 37 1 -3.3540 -2.0595 6.2182 38 1 1.6533 -2.7224 4.7962 39 1 0.6933 -2.4888 3.3034 40 1 1.0853 -2.5609 -0.7327 41 1 1.8976 -3.7209 -2.7459 42 1 3.9107 -0.1659 -3.9832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016305576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:30 Heat of formation + Delta-G solvation = -89.799656 kcal Electronic energy + Delta-G solvation = -27679.171319 eV Core-core repulsion = 23488.243542 eV Total energy + Delta-G solvation = -4190.927777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.10464 -50.04685 -41.44864 -39.97188 -38.92844 -35.55118 -35.22153 -33.88520 -31.86270 -31.26103 -30.22393 -29.49896 -26.16671 -25.58278 -24.26725 -23.51305 -22.62480 -21.65477 -21.02863 -19.58249 -19.32558 -18.63475 -17.87419 -17.64257 -17.13136 -16.99637 -16.74810 -16.55071 -16.35945 -16.12149 -15.77339 -15.52118 -15.37208 -15.09556 -15.00757 -14.56189 -14.24370 -13.87644 -13.77060 -13.45758 -13.37902 -13.12281 -13.00737 -12.86635 -12.75794 -12.59473 -12.37508 -12.25634 -12.20243 -11.78090 -11.45666 -11.04797 -10.82722 -10.64044 -10.14199 -10.08662 -9.69280 -9.05596 -8.64356 -5.44616 -0.15410 -0.01357 1.42931 1.53470 1.56693 1.76220 2.06282 2.42473 2.59788 2.78734 3.13305 3.24970 3.33548 3.38666 3.49132 3.62624 3.76511 3.86294 3.90336 4.03967 4.09551 4.16459 4.24524 4.35235 4.59381 4.63159 4.72651 4.76325 4.79472 4.82752 4.87214 4.88085 4.91502 4.96374 5.01031 5.16999 5.17889 5.23645 5.51000 5.57870 5.70084 6.10169 6.51802 6.84726 7.18881 7.45662 8.10937 8.89028 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.003135 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.308581 B = 8930.530448 C = 9024.292188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.127 0.873 4 C 0.521 3.479 5 O -0.568 6.568 6 N -0.703 5.703 7 C 0.138 3.862 8 H 0.109 0.891 9 C -0.119 4.119 10 C 0.096 3.904 11 N -0.627 5.627 12 C -0.310 4.310 13 H 0.036 0.964 14 C -0.083 4.083 15 N -0.967 5.967 16 Si 1.114 2.886 17 H -0.320 1.320 18 H -0.251 1.251 19 H -0.268 1.268 20 C 0.123 3.877 21 C -0.114 4.114 22 C -0.037 4.037 23 C -0.160 4.160 24 C 0.121 3.879 25 F -0.135 7.135 26 C -0.190 4.190 27 C 0.128 3.872 28 F -0.130 7.130 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.409 0.591 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.032 0.968 36 H 0.036 0.964 37 H 0.244 0.756 38 H 0.035 0.965 39 H 0.026 0.974 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.054 5.769 -18.241 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 H 0.145 0.855 4 C 0.308 3.692 5 O -0.447 6.447 6 N -0.354 5.354 7 C 0.032 3.968 8 H 0.127 0.873 9 C -0.157 4.157 10 C -0.027 4.027 11 N -0.355 5.355 12 C -0.438 4.438 13 H 0.054 0.946 14 C -0.275 4.275 15 N -0.611 5.611 16 Si 0.941 3.059 17 H -0.250 1.250 18 H -0.176 1.176 19 H -0.195 1.195 20 C -0.003 4.003 21 C -0.116 4.116 22 C -0.055 4.055 23 C -0.179 4.179 24 C 0.102 3.898 25 F -0.113 7.113 26 C -0.210 4.210 27 C 0.109 3.891 28 F -0.109 7.109 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.245 0.755 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.961 6.512 -17.878 24.205 hybrid contribution -0.272 -1.906 -0.271 1.944 sum 14.689 4.606 -18.150 23.799 Atomic orbital electron populations 1.21816 0.90394 1.03236 1.04263 1.20208 0.98787 1.00992 0.88704 0.85473 1.20724 0.79399 0.84158 0.84968 1.90683 1.39501 1.27426 1.87105 1.45812 1.52890 1.31825 1.04836 1.22041 0.96942 0.93306 0.84474 0.87293 1.22912 0.95008 1.01260 0.96561 1.22200 0.94152 0.88679 0.97716 1.44810 1.07671 1.21041 1.61977 1.19972 0.86884 0.97818 1.39158 0.94569 1.27264 0.93619 1.09456 0.97129 1.71024 1.26978 1.15773 1.47321 0.83366 0.74142 0.70661 0.77746 1.24969 1.17642 1.19468 1.22134 0.90482 0.94172 0.93521 1.19514 1.00420 0.95476 0.96148 1.20756 0.96774 0.92527 0.95474 1.21375 0.99760 1.02436 0.94313 1.17361 0.97205 0.90536 0.84722 1.91523 1.87409 1.81620 1.50778 1.21107 1.05714 0.94521 0.99610 1.17080 0.97680 0.79132 0.95217 1.91503 1.90913 1.33809 1.94658 0.92550 0.91142 0.89209 0.75544 0.87149 0.87663 0.95110 0.94616 0.94678 0.94736 0.95558 0.84540 0.82349 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.91 71.98 0.64 -2.10 16 2 C -0.07 -1.37 2.88 -12.28 -0.04 -1.41 16 3 H 0.13 2.20 7.12 -2.39 -0.02 2.18 16 4 C 0.52 14.00 7.02 87.66 0.62 14.61 16 5 O -0.57 -18.71 14.73 -3.02 -0.04 -18.75 16 6 N -0.70 -18.63 5.09 -435.60 -2.22 -20.85 16 7 C 0.14 3.99 3.43 46.46 0.16 4.14 16 8 H 0.11 2.99 7.54 -2.39 -0.02 2.97 16 9 C -0.12 -3.04 6.54 31.78 0.21 -2.83 16 10 C 0.10 3.57 4.62 86.73 0.40 3.97 16 11 N -0.63 -28.68 3.33 -691.58 -2.30 -30.98 16 12 C -0.31 -17.66 10.55 84.03 0.89 -16.78 16 13 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 14 C -0.08 -4.82 5.49 84.86 0.47 -4.36 16 15 N -0.97 -61.93 13.71 21.65 0.30 -61.64 16 16 Si 1.11 50.57 24.54 68.60 1.68 52.25 16 17 H -0.32 -15.40 7.11 99.48 0.71 -14.69 16 18 H -0.25 -9.93 5.45 99.48 0.54 -9.39 16 19 H -0.27 -10.65 6.84 99.48 0.68 -9.97 16 20 C 0.12 4.76 6.95 86.93 0.60 5.36 16 21 C -0.11 -2.46 4.41 -19.82 -0.09 -2.54 16 22 C -0.04 -0.80 7.92 22.25 0.18 -0.62 16 23 C -0.16 -3.02 10.02 22.32 0.22 -2.80 16 24 C 0.12 2.30 7.30 22.37 0.16 2.46 16 25 F -0.13 -2.60 17.27 44.97 0.78 -1.83 16 26 C -0.19 -3.41 10.01 22.36 0.22 -3.19 16 27 C 0.13 2.58 7.24 22.37 0.16 2.74 16 28 F -0.13 -2.59 16.19 44.97 0.73 -1.86 16 29 H 0.06 1.23 7.40 -2.39 -0.02 1.21 16 30 H 0.07 1.43 7.56 -2.39 -0.02 1.42 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 9.81 8.09 -92.71 -0.75 9.06 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.03 1.15 3.72 -2.39 -0.01 1.15 16 36 H 0.04 1.42 6.83 -2.38 -0.02 1.40 16 37 H 0.24 15.88 8.73 -92.71 -0.81 15.07 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.14 3.06 7.51 -2.91 -0.02 3.04 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -72.35 346.94 3.81 -68.54 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.08 Total: 18.44 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.81 Total: -3.33 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.22 Total: -113.47 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.04 Total: -18.75 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 1.50 Total: -3.68 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 1.68 Total: 52.25 kcal Total: -72.35 3.81 -68.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016305576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.258 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds