Wall clock time and date at job start Tue Mar 31 2020 15:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47367 * 2 1 4 4 C 1.50704 * 109.47229 * 239.99480 * 2 1 3 5 5 O 1.21279 * 119.99924 * 240.00120 * 4 2 1 6 6 N 1.34775 * 119.99666 * 60.00232 * 4 2 1 7 7 C 1.46501 * 119.99815 * 180.02562 * 6 4 2 8 8 H 1.08996 * 110.88540 * 37.42196 * 7 6 4 9 9 C 1.55158 * 111.00617 * 161.34882 * 7 6 4 10 10 C 1.54316 * 102.94139 * 153.57407 * 9 7 6 11 11 N 1.47020 * 107.27568 * 337.80546 * 10 9 7 12 12 C 1.36938 * 125.65236 * 178.97773 * 11 10 9 13 13 H 1.07994 * 120.00035 * 179.97438 * 12 11 10 14 14 C 1.38811 * 119.99774 * 359.95644 * 12 11 10 15 15 N 1.31617 * 120.00082 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99981 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47043 * 90.00332 * 16 14 12 18 18 H 1.48496 * 109.46910 * 210.00251 * 16 14 12 19 19 H 1.48497 * 109.47083 * 330.00433 * 16 14 12 20 20 C 1.47422 * 108.70191 * 358.94070 * 11 10 9 21 21 C 1.50708 * 109.47083 * 119.99733 * 2 1 3 22 22 C 1.38254 * 119.96655 * 59.72845 * 21 2 1 23 23 C 1.38206 * 120.07168 * 179.72841 * 22 21 2 24 24 C 1.38420 * 120.00085 * 0.54290 * 23 22 21 25 25 F 1.35095 * 120.03486 * 179.75024 * 24 23 22 26 26 C 1.38653 * 119.92494 * 359.72917 * 24 23 22 27 27 F 1.35098 * 120.03246 * 180.02562 * 26 24 23 28 28 C 1.38216 * 119.96315 * 240.00002 * 21 2 1 29 29 H 1.08999 * 109.47155 * 60.00352 * 1 2 3 30 30 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47092 * 300.00070 * 1 2 3 32 32 H 0.97001 * 120.00218 * 359.97438 * 6 4 2 33 33 H 1.09003 * 110.71801 * 271.93929 * 9 7 6 34 34 H 1.08999 * 110.71744 * 35.02967 * 9 7 6 35 35 H 1.09000 * 109.88340 * 97.22892 * 10 9 7 36 36 H 1.09005 * 109.88355 * 218.23652 * 10 9 7 37 37 H 0.97006 * 120.00279 * 180.02562 * 15 14 12 38 38 H 1.08998 * 110.36873 * 265.28987 * 20 11 10 39 39 H 1.09005 * 110.36491 * 142.96394 * 20 11 10 40 40 H 1.08001 * 119.96343 * 0.02562 * 22 21 2 41 41 H 1.08000 * 120.00262 * 180.27744 * 23 22 21 42 42 H 1.08002 * 119.99727 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1947 -0.9411 -3.6507 8 1 2.1997 -2.0207 -3.5008 9 6 1.3549 -0.5557 -4.8971 10 6 2.3453 -0.7701 -6.0609 11 7 3.7018 -0.7010 -5.4982 12 6 4.8664 -0.8613 -6.2005 13 1 5.8170 -0.7914 -5.6929 14 6 4.8249 -1.1138 -7.5648 15 7 3.6663 -1.1988 -8.1834 16 14 6.4136 -1.3317 -8.5231 17 1 6.8000 -2.7655 -8.5213 18 1 6.2146 -0.8745 -9.9218 19 1 7.4889 -0.5284 -7.8879 20 6 3.6006 -0.4297 -4.0527 21 6 2.0323 -0.7104 1.2306 22 6 1.6933 -2.0324 1.4516 23 6 2.1574 -2.6876 2.5765 24 6 2.9533 -2.0170 3.4890 25 9 3.4031 -2.6553 4.5914 26 6 3.2887 -0.6895 3.2702 27 9 4.0658 -0.0331 4.1592 28 6 2.8269 -0.0379 2.1398 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.1488 0.5384 -2.5436 33 1 0.4917 -1.2135 -4.9990 34 1 1.0395 0.4863 -4.8424 35 1 2.1806 -1.7485 -6.5123 36 1 2.2120 0.0106 -6.8098 37 1 3.6373 -1.3757 -9.1368 38 1 3.6844 0.6399 -3.8607 39 1 4.3723 -0.9752 -3.5094 40 1 1.0690 -2.5550 0.7419 41 1 1.8955 -3.7216 2.7457 42 1 3.0878 0.9960 1.9680 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016306217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:42 Heat of formation + Delta-G solvation = -77.678238 kcal Electronic energy + Delta-G solvation = -26865.566191 eV Core-core repulsion = 22675.164039 eV Total energy + Delta-G solvation = -4190.402152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.66083 -48.73864 -40.47432 -38.86307 -37.22665 -34.39029 -33.94255 -31.85095 -31.17406 -29.50581 -29.04710 -27.14045 -25.16358 -24.35251 -23.54464 -22.43747 -20.48481 -20.37244 -19.78512 -18.19152 -17.71707 -17.33417 -16.87201 -16.58795 -16.43409 -15.91208 -15.48655 -15.15262 -14.71189 -14.68915 -14.48170 -14.34561 -14.15825 -13.92356 -13.32119 -13.15231 -12.95433 -12.71086 -12.47470 -12.29897 -12.13724 -11.90926 -11.87656 -11.71693 -11.35517 -11.00980 -10.90967 -10.76243 -10.39602 -10.11567 -9.96012 -9.77662 -9.66498 -9.29051 -8.85376 -8.80884 -8.61699 -6.86282 -5.73432 -3.06926 0.64282 0.76056 2.67265 2.96936 3.35488 3.40694 3.45783 3.47490 3.55144 4.02803 4.15008 4.29333 4.49576 4.63172 4.71565 4.77481 4.84888 4.92761 5.18382 5.30108 5.39368 5.42322 5.48377 5.52224 5.58109 5.63285 5.69126 5.72271 5.77160 5.81543 6.09439 6.13519 6.28093 6.36400 6.48255 6.54725 6.67443 6.92385 7.50618 7.54086 7.62612 7.79344 8.22179 8.31516 9.20064 9.79883 10.44361 11.38558 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002527 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.744606 B =11078.554011 C =11841.604528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 H 0.110 0.890 4 C 0.514 3.486 5 O -0.529 6.529 6 N -0.714 5.714 7 C 0.128 3.872 8 H 0.094 0.906 9 C -0.149 4.149 10 C 0.179 3.821 11 N -0.604 5.604 12 C -0.227 4.227 13 H 0.078 0.922 14 C -0.008 4.008 15 N -0.924 5.924 16 Si 0.913 3.087 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.130 3.870 21 C -0.045 4.045 22 C -0.064 4.064 23 C -0.125 4.125 24 C 0.065 3.935 25 F -0.131 7.131 26 C 0.064 3.936 27 F -0.131 7.131 28 C -0.118 4.118 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.252 0.748 38 H 0.019 0.981 39 H 0.043 0.957 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 3.342 20.883 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 H 0.128 0.872 4 C 0.299 3.701 5 O -0.405 6.405 6 N -0.364 5.364 7 C 0.023 3.977 8 H 0.112 0.888 9 C -0.188 4.188 10 C 0.054 3.946 11 N -0.331 5.331 12 C -0.355 4.355 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.572 5.572 16 Si 0.744 3.256 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.002 3.998 21 C -0.046 4.046 22 C -0.082 4.082 23 C -0.144 4.144 24 C 0.045 3.955 25 F -0.110 7.110 26 C 0.044 3.956 27 F -0.109 7.109 28 C -0.137 4.137 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.092 2.580 20.794 23.257 hybrid contribution 0.894 0.311 -0.284 0.988 sum -9.199 2.891 20.509 22.663 Atomic orbital electron populations 1.21819 0.91486 1.03395 1.03245 1.20338 0.98048 1.00561 0.90561 0.87245 1.20286 0.80579 0.84878 0.84376 1.90757 1.37113 1.26109 1.86495 1.46002 1.53080 1.31804 1.05557 1.22314 0.95550 0.97276 0.82530 0.88826 1.23173 0.98976 1.00397 0.96207 1.21138 0.81512 1.01241 0.90715 1.44390 1.02612 1.84311 1.01764 1.19075 0.84388 1.41751 0.90301 0.90387 1.24800 0.97141 1.01996 0.96505 1.69941 1.22392 1.55713 1.09128 0.86096 0.82376 0.77890 0.79288 1.21534 1.21658 1.20669 1.21817 0.94144 0.96924 0.86891 1.19215 0.96710 0.94177 0.94473 1.20890 0.98327 0.93496 0.95522 1.21061 0.98176 1.01195 0.93979 1.17710 1.00992 0.90009 0.86799 1.91520 1.87559 1.81426 1.50482 1.17558 0.97318 0.89819 0.90897 1.91524 1.72291 1.80526 1.66577 1.20921 0.98683 1.01356 0.92693 0.91169 0.91557 0.91077 0.76865 0.91597 0.92010 0.93252 0.93567 0.93725 0.96371 0.93857 0.84323 0.83626 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.90 37.16 0.33 -0.50 16 2 C -0.07 -0.62 2.90 -92.92 -0.27 -0.89 16 3 H 0.11 0.71 7.87 -51.93 -0.41 0.30 16 4 C 0.51 6.52 7.02 -10.98 -0.08 6.44 16 5 O -0.53 -9.01 14.87 5.56 0.08 -8.93 16 6 N -0.71 -8.86 5.12 -51.72 -0.27 -9.13 16 7 C 0.13 2.17 3.32 -65.78 -0.22 1.96 16 8 H 0.09 1.77 7.73 -51.93 -0.40 1.37 16 9 C -0.15 -2.50 6.58 -24.90 -0.16 -2.67 16 10 C 0.18 4.19 5.37 -3.07 -0.02 4.17 16 11 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 12 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 13 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 15 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 16 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.13 2.73 6.93 -2.53 -0.02 2.71 16 21 C -0.04 -0.43 4.39 -104.62 -0.46 -0.89 16 22 C -0.06 -0.63 7.93 -39.59 -0.31 -0.94 16 23 C -0.13 -1.21 10.02 -39.53 -0.40 -1.60 16 24 C 0.07 0.72 7.31 -39.36 -0.29 0.44 16 25 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 26 C 0.06 0.71 7.31 -39.37 -0.29 0.43 16 27 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 28 C -0.12 -1.13 9.65 -39.53 -0.38 -1.51 16 29 H 0.07 0.33 7.56 -51.93 -0.39 -0.06 16 30 H 0.07 0.41 7.37 -51.93 -0.38 0.03 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.40 3.65 7.93 -40.82 -0.32 3.33 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.91 7.99 -51.93 -0.42 0.50 16 35 H 0.05 1.28 7.38 -51.93 -0.38 0.90 16 36 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.14 1.25 7.51 -52.49 -0.39 0.86 16 41 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.15 1.07 7.94 -52.49 -0.42 0.66 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -33.18 355.90 -8.15 -41.33 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.57 Total: -0.71 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.81 Total: 0.27 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.27 Total: -51.44 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.18 -8.15 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016306217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.350 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds