Wall clock time and date at job start Tue Mar 31 2020 15:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47367 * 2 1 4 4 C 1.50704 * 109.47229 * 239.99480 * 2 1 3 5 5 O 1.21279 * 119.99924 * 240.00120 * 4 2 1 6 6 N 1.34775 * 119.99666 * 60.00232 * 4 2 1 7 7 C 1.46501 * 119.99815 * 180.02562 * 6 4 2 8 8 H 1.08996 * 110.88540 * 37.42196 * 7 6 4 9 9 C 1.55158 * 111.00617 * 161.34882 * 7 6 4 10 10 C 1.54316 * 102.94139 * 153.57407 * 9 7 6 11 11 N 1.47020 * 107.27568 * 337.80546 * 10 9 7 12 12 C 1.36938 * 125.65236 * 178.97773 * 11 10 9 13 13 H 1.07994 * 120.00035 * 179.97438 * 12 11 10 14 14 C 1.38811 * 119.99774 * 359.95644 * 12 11 10 15 15 N 1.31617 * 120.00082 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99981 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47043 * 90.00332 * 16 14 12 18 18 H 1.48496 * 109.46910 * 210.00251 * 16 14 12 19 19 H 1.48497 * 109.47083 * 330.00433 * 16 14 12 20 20 C 1.47422 * 108.70191 * 358.94070 * 11 10 9 21 21 C 1.50708 * 109.47083 * 119.99733 * 2 1 3 22 22 C 1.38254 * 119.96655 * 59.72845 * 21 2 1 23 23 C 1.38206 * 120.07168 * 179.72841 * 22 21 2 24 24 C 1.38420 * 120.00085 * 0.54290 * 23 22 21 25 25 F 1.35095 * 120.03486 * 179.75024 * 24 23 22 26 26 C 1.38653 * 119.92494 * 359.72917 * 24 23 22 27 27 F 1.35098 * 120.03246 * 180.02562 * 26 24 23 28 28 C 1.38216 * 119.96315 * 240.00002 * 21 2 1 29 29 H 1.08999 * 109.47155 * 60.00352 * 1 2 3 30 30 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47092 * 300.00070 * 1 2 3 32 32 H 0.97001 * 120.00218 * 359.97438 * 6 4 2 33 33 H 1.09003 * 110.71801 * 271.93929 * 9 7 6 34 34 H 1.08999 * 110.71744 * 35.02967 * 9 7 6 35 35 H 1.09000 * 109.88340 * 97.22892 * 10 9 7 36 36 H 1.09005 * 109.88355 * 218.23652 * 10 9 7 37 37 H 0.97006 * 120.00279 * 180.02562 * 15 14 12 38 38 H 1.08998 * 110.36873 * 265.28987 * 20 11 10 39 39 H 1.09005 * 110.36491 * 142.96394 * 20 11 10 40 40 H 1.08001 * 119.96343 * 0.02562 * 22 21 2 41 41 H 1.08000 * 120.00262 * 180.27744 * 23 22 21 42 42 H 1.08002 * 119.99727 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1947 -0.9411 -3.6507 8 1 2.1997 -2.0207 -3.5008 9 6 1.3549 -0.5557 -4.8971 10 6 2.3453 -0.7701 -6.0609 11 7 3.7018 -0.7010 -5.4982 12 6 4.8664 -0.8613 -6.2005 13 1 5.8170 -0.7914 -5.6929 14 6 4.8249 -1.1138 -7.5648 15 7 3.6663 -1.1988 -8.1834 16 14 6.4136 -1.3317 -8.5231 17 1 6.8000 -2.7655 -8.5213 18 1 6.2146 -0.8745 -9.9218 19 1 7.4889 -0.5284 -7.8879 20 6 3.6006 -0.4297 -4.0527 21 6 2.0323 -0.7104 1.2306 22 6 1.6933 -2.0324 1.4516 23 6 2.1574 -2.6876 2.5765 24 6 2.9533 -2.0170 3.4890 25 9 3.4031 -2.6553 4.5914 26 6 3.2887 -0.6895 3.2702 27 9 4.0658 -0.0331 4.1592 28 6 2.8269 -0.0379 2.1398 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.1488 0.5384 -2.5436 33 1 0.4917 -1.2135 -4.9990 34 1 1.0395 0.4863 -4.8424 35 1 2.1806 -1.7485 -6.5123 36 1 2.2120 0.0106 -6.8098 37 1 3.6373 -1.3757 -9.1368 38 1 3.6844 0.6399 -3.8607 39 1 4.3723 -0.9752 -3.5094 40 1 1.0690 -2.5550 0.7419 41 1 1.8955 -3.7216 2.7457 42 1 3.0878 0.9960 1.9680 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016306217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:41 Heat of formation + Delta-G solvation = -98.259994 kcal Electronic energy + Delta-G solvation = -26866.458683 eV Core-core repulsion = 22675.164039 eV Total energy + Delta-G solvation = -4191.294644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.52656 -49.61222 -41.41757 -39.88175 -38.72363 -35.61350 -35.03296 -33.60192 -31.92220 -31.03717 -30.07220 -28.71054 -26.58148 -25.54925 -24.29789 -23.43798 -22.11641 -21.74340 -20.97813 -19.11505 -18.96346 -18.44207 -18.07567 -17.58285 -17.35801 -17.08548 -16.66222 -16.39815 -16.04051 -15.83209 -15.57580 -15.53371 -15.20370 -14.92282 -14.53364 -14.19315 -14.07061 -13.91485 -13.79326 -13.66187 -13.29420 -12.97356 -12.92953 -12.77492 -12.58120 -12.44505 -12.30745 -12.10857 -12.04123 -11.95079 -11.80963 -11.56128 -10.76348 -10.71936 -10.09093 -10.01326 -9.65861 -8.91779 -7.87435 -5.23073 -0.15104 0.01386 1.45020 1.46962 1.55479 1.68831 2.05487 2.43815 2.52706 2.77330 3.25748 3.31309 3.39955 3.55343 3.69984 3.74705 3.93843 4.06010 4.08199 4.12559 4.24357 4.24741 4.29585 4.62016 4.70501 4.77193 4.78765 4.84361 4.90437 4.94660 4.98342 5.01615 5.05889 5.13873 5.32963 5.41469 5.42259 5.57951 5.66508 5.72290 5.75086 6.18766 6.65257 7.09268 7.34166 7.74993 8.37562 9.22482 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.002527 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.744606 B =11078.554011 C =11841.604528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 H 0.139 0.861 4 C 0.513 3.487 5 O -0.576 6.576 6 N -0.699 5.699 7 C 0.149 3.851 8 H 0.073 0.927 9 C -0.126 4.126 10 C 0.182 3.818 11 N -0.627 5.627 12 C -0.247 4.247 13 H 0.075 0.925 14 C -0.062 4.062 15 N -0.948 5.948 16 Si 0.977 3.023 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.271 1.271 20 C 0.128 3.872 21 C -0.051 4.051 22 C -0.069 4.069 23 C -0.125 4.125 24 C 0.046 3.954 25 F -0.141 7.141 26 C 0.046 3.954 27 F -0.140 7.140 28 C -0.114 4.114 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.012 0.988 36 H 0.016 0.984 37 H 0.249 0.751 38 H 0.031 0.969 39 H 0.021 0.979 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.086 4.782 21.695 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 H 0.156 0.844 4 C 0.300 3.700 5 O -0.455 6.455 6 N -0.351 5.351 7 C 0.043 3.957 8 H 0.091 0.909 9 C -0.165 4.165 10 C 0.057 3.943 11 N -0.354 5.354 12 C -0.376 4.376 13 H 0.093 0.907 14 C -0.255 4.255 15 N -0.596 5.596 16 Si 0.805 3.195 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.196 1.196 20 C 0.001 3.999 21 C -0.051 4.051 22 C -0.088 4.088 23 C -0.144 4.144 24 C 0.026 3.974 25 F -0.120 7.120 26 C 0.026 3.974 27 F -0.119 7.119 28 C -0.132 4.132 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.163 0.837 41 H 0.181 0.819 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.489 4.061 21.647 24.842 hybrid contribution 1.339 -0.153 -0.509 1.440 sum -10.151 3.908 21.139 23.773 Atomic orbital electron populations 1.21875 0.89075 1.03730 1.05068 1.20372 0.99806 1.00920 0.87154 0.84357 1.21073 0.79381 0.84214 0.85287 1.90753 1.39209 1.28370 1.87164 1.45729 1.53038 1.32216 1.04125 1.21736 0.93161 0.96391 0.84449 0.90909 1.22975 0.97679 1.03081 0.92718 1.20952 0.82454 0.98124 0.92769 1.44686 1.02726 1.84237 1.03737 1.19402 0.85557 1.41624 0.91024 0.90692 1.25614 1.00285 1.02187 0.97409 1.70150 1.24128 1.56421 1.08946 0.85099 0.78974 0.77704 0.77679 1.21389 1.21563 1.19593 1.21947 0.96258 0.97232 0.84455 1.19450 0.96497 0.94261 0.94941 1.21088 0.98305 0.93898 0.95463 1.21269 0.97542 1.02018 0.93565 1.17977 1.01914 0.90411 0.87064 1.91487 1.87823 1.81646 1.51063 1.17825 0.97938 0.90047 0.91556 1.91494 1.72673 1.80682 1.67029 1.21163 0.97847 1.02401 0.91816 0.89399 0.92047 0.89251 0.74345 0.89024 0.88781 0.96994 0.96568 0.94199 0.95158 0.96093 0.83713 0.81936 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.90 71.98 0.64 -0.38 16 2 C -0.06 -0.80 2.90 -12.28 -0.04 -0.84 16 3 H 0.14 1.08 7.87 -2.39 -0.02 1.06 16 4 C 0.51 11.65 7.02 87.66 0.62 12.27 16 5 O -0.58 -19.02 14.87 -3.03 -0.05 -19.06 16 6 N -0.70 -15.06 5.12 -435.95 -2.23 -17.30 16 7 C 0.15 4.82 3.32 46.39 0.15 4.97 16 8 H 0.07 2.71 7.73 -2.39 -0.02 2.69 16 9 C -0.13 -3.95 6.58 31.78 0.21 -3.74 16 10 C 0.18 8.63 5.37 86.73 0.47 9.09 16 11 N -0.63 -32.52 3.39 -691.99 -2.35 -34.87 16 12 C -0.25 -14.20 10.28 84.03 0.86 -13.34 16 13 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 14 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 15 N -0.95 -56.59 10.31 21.65 0.22 -56.37 16 16 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.13 5.33 6.93 86.86 0.60 5.94 16 21 C -0.05 -0.85 4.39 -19.86 -0.09 -0.94 16 22 C -0.07 -1.25 7.93 22.27 0.18 -1.07 16 23 C -0.13 -2.31 10.02 22.31 0.22 -2.08 16 24 C 0.05 1.02 7.31 22.41 0.16 1.18 16 25 F -0.14 -3.43 17.18 44.97 0.77 -2.65 16 26 C 0.05 1.00 7.31 22.41 0.16 1.16 16 27 F -0.14 -3.31 17.18 44.97 0.77 -2.54 16 28 C -0.11 -1.94 9.65 22.30 0.22 -1.72 16 29 H 0.09 0.37 7.56 -2.39 -0.02 0.35 16 30 H 0.06 0.54 7.37 -2.39 -0.02 0.52 16 31 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.42 5.67 7.93 -92.71 -0.74 4.93 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.09 2.39 7.99 -2.39 -0.02 2.37 16 35 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 36 H 0.02 0.85 7.50 -2.38 -0.02 0.83 16 37 H 0.25 14.39 8.31 -92.70 -0.77 13.61 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.15 2.39 7.51 -2.91 -0.02 2.36 16 41 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.17 1.96 7.94 -2.91 -0.02 1.93 16 Total: -1.00 -75.86 355.90 4.32 -71.54 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.32 Total: 5.56 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.84 Total: 7.42 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -4.36 Total: -108.54 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 1.55 Total: -5.19 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -75.86 4.32 -71.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016306217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.724 kcal (2) G-P(sol) polarization free energy of solvation -75.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds