Wall clock time and date at job start Tue Mar 31 2020 15:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46705 * 2 1 4 4 C 1.50697 * 109.47368 * 119.99810 * 2 1 3 5 5 O 1.21285 * 119.99706 * 34.91597 * 4 2 1 6 6 N 1.34779 * 120.00194 * 214.91971 * 4 2 1 7 7 C 1.47285 * 125.79329 * 354.97219 * 6 4 2 8 8 C 1.54322 * 107.30818 * 178.92770 * 7 6 4 9 9 C 1.55157 * 102.93893 * 337.81486 * 8 7 6 10 10 H 1.08996 * 111.04224 * 277.41043 * 9 8 7 11 11 N 1.46503 * 111.00077 * 153.57357 * 9 8 7 12 12 C 1.36939 * 119.99887 * 92.80725 * 11 9 8 13 13 H 1.08009 * 119.99829 * 359.97438 * 12 11 9 14 14 C 1.38807 * 120.00131 * 179.97438 * 12 11 9 15 15 N 1.31627 * 119.99942 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00254 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47139 * 89.99712 * 16 14 12 18 18 H 1.48504 * 109.47607 * 210.00028 * 16 14 12 19 19 H 1.48504 * 109.46889 * 330.00049 * 16 14 12 20 20 C 1.47424 * 125.64958 * 174.97359 * 6 4 2 21 21 C 1.50696 * 109.47271 * 239.99944 * 2 1 3 22 22 C 1.38258 * 119.96567 * 299.72288 * 21 2 1 23 23 C 1.38214 * 120.07020 * 179.76465 * 22 21 2 24 24 C 1.38402 * 119.99852 * 0.51202 * 23 22 21 25 25 F 1.35107 * 120.03522 * 179.72497 * 24 23 22 26 26 C 1.38645 * 119.93384 * 359.74366 * 24 23 22 27 27 F 1.35106 * 120.03776 * 180.02562 * 26 24 23 28 28 C 1.38211 * 119.96614 * 119.99835 * 21 2 1 29 29 H 1.09004 * 109.47372 * 64.98127 * 1 2 3 30 30 H 1.08996 * 109.47401 * 184.98062 * 1 2 3 31 31 H 1.09001 * 109.47702 * 304.98035 * 1 2 3 32 32 H 1.09009 * 109.85673 * 59.49951 * 7 6 4 33 33 H 1.09002 * 109.87545 * 298.36441 * 7 6 4 34 34 H 1.09003 * 110.71710 * 219.45535 * 8 7 6 35 35 H 1.08993 * 110.87101 * 96.24794 * 8 7 6 36 36 H 0.96996 * 120.00298 * 272.80097 * 11 9 8 37 37 H 0.97002 * 120.00065 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.36542 * 85.25845 * 20 6 4 39 39 H 1.09001 * 110.36399 * 323.04933 * 20 6 4 40 40 H 1.07999 * 119.96182 * 0.02562 * 22 21 2 41 41 H 1.08002 * 119.99688 * 180.25641 * 23 22 21 42 42 H 1.08003 * 119.99962 * 359.95248 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 1.4224 -1.6604 1.6736 6 7 3.1593 -0.2899 1.8384 7 6 4.0525 0.7767 1.3547 8 6 5.1908 0.9252 2.3862 9 6 4.5710 0.3259 3.6762 10 1 3.9533 1.0612 4.1918 11 7 5.6118 -0.1970 4.5648 12 6 6.1368 0.5994 5.5474 13 1 5.7838 1.6132 5.6669 14 6 7.1226 0.1039 6.3896 15 7 7.6268 0.8693 7.3344 16 14 7.7326 -1.6495 6.1834 17 1 8.8788 -1.6671 5.2395 18 1 8.1676 -2.1805 7.5003 19 1 6.6362 -2.4951 5.6465 20 6 3.7043 -0.8218 3.1007 21 6 2.0323 -0.7104 -1.2304 22 6 1.7026 -2.0357 -1.4456 23 6 2.1581 -2.6880 -2.5758 24 6 2.9540 -2.0175 -3.4882 25 9 3.4043 -2.6560 -4.5905 26 6 3.2890 -0.6899 -3.2699 27 9 4.0653 -0.0332 -4.1595 28 6 2.8268 -0.0380 -2.1397 29 1 -0.3634 0.4346 -0.9313 30 1 -0.3634 -1.0237 0.0892 31 1 -0.3634 0.5891 0.8420 32 1 3.5008 1.7134 1.2739 33 1 4.4654 0.5023 0.3840 34 1 5.4444 1.9752 2.5320 35 1 6.0688 0.3566 2.0801 36 1 5.9290 -1.1073 4.4573 37 1 8.3159 0.5231 7.9228 38 1 4.3188 -1.7012 2.9078 39 1 2.8958 -1.0684 3.7889 40 1 1.0850 -2.5607 -0.7319 41 1 1.8965 -3.7221 -2.7448 42 1 3.0867 0.9962 -1.9687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019796378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:22 Heat of formation + Delta-G solvation = -84.075556 kcal Electronic energy + Delta-G solvation = -27161.083643 eV Core-core repulsion = 22970.404082 eV Total energy + Delta-G solvation = -4190.679561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.78378 -48.85983 -40.64718 -39.11865 -37.52717 -34.43493 -34.12013 -31.66355 -31.30698 -29.94937 -29.47616 -28.29891 -25.20062 -23.69425 -23.61839 -22.78315 -21.87637 -20.31814 -19.17472 -18.28228 -17.90983 -17.71606 -17.32421 -16.69997 -16.61524 -16.24765 -15.65455 -15.27157 -15.08743 -14.81783 -14.50843 -14.30930 -14.10799 -13.75477 -13.44180 -13.38403 -13.27595 -12.84041 -12.72488 -12.62022 -12.23047 -12.15118 -11.99548 -11.92919 -11.76454 -11.50393 -11.36456 -10.94363 -10.80502 -10.54255 -10.15133 -9.96876 -9.69679 -9.46441 -9.05207 -8.97512 -8.60514 -7.42298 -5.87492 -3.25637 0.46413 0.58754 2.48064 2.82534 3.02987 3.31722 3.34704 3.40252 3.40629 3.92397 4.08834 4.20042 4.37814 4.50061 4.57548 4.65107 4.72998 4.82356 4.91366 5.10719 5.14878 5.25425 5.31988 5.37294 5.39937 5.46865 5.51906 5.55301 5.57714 5.65458 5.78017 5.79437 5.85649 5.96966 6.04218 6.18043 6.32864 6.34161 6.45060 6.69582 7.51680 7.85685 8.07928 8.30754 9.07032 9.79442 9.97137 11.30098 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002914 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.743025 B = 9607.377014 C =10161.550388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.067 4.067 3 H 0.102 0.898 4 C 0.535 3.465 5 O -0.539 6.539 6 N -0.610 5.610 7 C 0.098 3.902 8 C -0.156 4.156 9 C 0.178 3.822 10 H 0.076 0.924 11 N -0.738 5.738 12 C -0.251 4.251 13 H 0.093 0.907 14 C 0.010 3.990 15 N -0.929 5.929 16 Si 0.883 3.117 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.094 3.906 21 C -0.057 4.057 22 C -0.084 4.084 23 C -0.123 4.123 24 C 0.066 3.934 25 F -0.129 7.129 26 C 0.069 3.931 27 F -0.128 7.128 28 C -0.117 4.117 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 -1.864 -22.151 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 H 0.120 0.880 4 C 0.322 3.678 5 O -0.416 6.416 6 N -0.343 5.343 7 C -0.025 4.025 8 C -0.197 4.197 9 C 0.066 3.934 10 H 0.094 0.906 11 N -0.379 5.379 12 C -0.381 4.381 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.576 5.576 16 Si 0.713 3.287 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.202 1.202 20 C -0.029 4.029 21 C -0.057 4.057 22 C -0.102 4.102 23 C -0.141 4.141 24 C 0.046 3.954 25 F -0.108 7.108 26 C 0.048 3.952 27 F -0.106 7.106 28 C -0.136 4.136 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.996 -2.204 -21.818 26.015 hybrid contribution 1.017 -1.141 -0.519 1.614 sum -12.979 -3.345 -22.337 26.050 Atomic orbital electron populations 1.21714 0.90942 1.03958 1.02554 1.20285 0.98591 0.99957 0.90016 0.87953 1.19935 0.79445 0.83969 0.84416 1.90693 1.57164 1.27792 1.65977 1.48515 1.23405 1.37522 1.24879 1.22216 0.91814 0.90027 0.98417 1.23393 0.96793 1.03068 0.96403 1.21263 0.89454 0.93167 0.89525 0.90593 1.42616 1.44176 1.13679 1.37423 1.19037 1.16045 0.96482 1.06527 0.88968 1.24673 0.98843 0.97618 0.97550 1.69697 1.30899 1.35851 1.21159 0.86577 0.78920 0.85886 0.77307 1.20939 1.21557 1.20206 1.22629 0.98016 0.97833 0.84432 1.19365 0.97132 0.94205 0.95037 1.21148 0.98781 0.93815 0.96477 1.21112 0.97900 1.01385 0.93741 1.17749 1.00805 0.90043 0.86798 1.91537 1.87452 1.81368 1.50421 1.17590 0.97051 0.89752 0.90762 1.91546 1.72200 1.80444 1.66422 1.20992 0.98550 1.01467 0.92581 0.91426 0.90814 0.91478 0.91462 0.91861 0.90079 0.90633 0.80299 0.92861 0.91650 0.90284 0.83405 0.83428 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.69 37.15 0.32 -0.72 16 2 C -0.07 -0.60 2.53 -92.93 -0.24 -0.83 16 3 H 0.10 0.72 6.65 -51.93 -0.35 0.37 16 4 C 0.53 6.88 6.49 -10.99 -0.07 6.81 16 5 O -0.54 -8.59 15.92 5.55 0.09 -8.50 16 6 N -0.61 -8.12 3.34 -170.31 -0.57 -8.69 16 7 C 0.10 1.10 6.22 -2.92 -0.02 1.08 16 8 C -0.16 -2.24 6.65 -24.90 -0.17 -2.40 16 9 C 0.18 3.10 3.71 -65.78 -0.24 2.85 16 10 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 11 N -0.74 -16.29 5.05 -51.35 -0.26 -16.55 16 12 C -0.25 -6.71 10.44 -15.06 -0.16 -6.86 16 13 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 14 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 15 N -0.93 -28.26 13.97 55.49 0.78 -27.49 16 16 Si 0.88 21.37 27.73 -169.99 -4.71 16.65 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 20 C 0.09 1.49 6.53 -2.53 -0.02 1.47 16 21 C -0.06 -0.50 4.77 -104.63 -0.50 -0.99 16 22 C -0.08 -0.75 8.84 -39.58 -0.35 -1.10 16 23 C -0.12 -1.04 10.02 -39.53 -0.40 -1.44 16 24 C 0.07 0.66 7.31 -39.37 -0.29 0.37 16 25 F -0.13 -1.42 17.18 2.25 0.04 -1.38 16 26 C 0.07 0.68 7.31 -39.37 -0.29 0.39 16 27 F -0.13 -1.40 17.18 2.25 0.04 -1.36 16 28 C -0.12 -0.97 9.65 -39.53 -0.38 -1.35 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.64 7.12 -51.93 -0.37 0.27 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.61 7.64 -51.92 -0.40 0.21 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.36 7.99 5.62 -40.82 -0.23 7.76 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 39 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 40 H 0.15 1.33 7.14 -52.49 -0.37 0.96 16 41 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.15 0.91 7.94 -52.48 -0.42 0.50 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -31.68 357.22 -7.62 -39.30 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.52 Total: 5.18 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.88 Total: -2.54 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.05 Total: -52.73 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.68 -7.62 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019796378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.777 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds