Wall clock time and date at job start Tue Mar 31 2020 15:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46705 * 2 1 4 4 C 1.50697 * 109.47368 * 119.99810 * 2 1 3 5 5 O 1.21285 * 119.99706 * 34.91597 * 4 2 1 6 6 N 1.34779 * 120.00194 * 214.91971 * 4 2 1 7 7 C 1.47285 * 125.79329 * 354.97219 * 6 4 2 8 8 C 1.54322 * 107.30818 * 178.92770 * 7 6 4 9 9 C 1.55157 * 102.93893 * 337.81486 * 8 7 6 10 10 H 1.08996 * 111.04224 * 277.41043 * 9 8 7 11 11 N 1.46503 * 111.00077 * 153.57357 * 9 8 7 12 12 C 1.36939 * 119.99887 * 92.80725 * 11 9 8 13 13 H 1.08009 * 119.99829 * 359.97438 * 12 11 9 14 14 C 1.38807 * 120.00131 * 179.97438 * 12 11 9 15 15 N 1.31627 * 119.99942 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00254 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47139 * 89.99712 * 16 14 12 18 18 H 1.48504 * 109.47607 * 210.00028 * 16 14 12 19 19 H 1.48504 * 109.46889 * 330.00049 * 16 14 12 20 20 C 1.47424 * 125.64958 * 174.97359 * 6 4 2 21 21 C 1.50696 * 109.47271 * 239.99944 * 2 1 3 22 22 C 1.38258 * 119.96567 * 299.72288 * 21 2 1 23 23 C 1.38214 * 120.07020 * 179.76465 * 22 21 2 24 24 C 1.38402 * 119.99852 * 0.51202 * 23 22 21 25 25 F 1.35107 * 120.03522 * 179.72497 * 24 23 22 26 26 C 1.38645 * 119.93384 * 359.74366 * 24 23 22 27 27 F 1.35106 * 120.03776 * 180.02562 * 26 24 23 28 28 C 1.38211 * 119.96614 * 119.99835 * 21 2 1 29 29 H 1.09004 * 109.47372 * 64.98127 * 1 2 3 30 30 H 1.08996 * 109.47401 * 184.98062 * 1 2 3 31 31 H 1.09001 * 109.47702 * 304.98035 * 1 2 3 32 32 H 1.09009 * 109.85673 * 59.49951 * 7 6 4 33 33 H 1.09002 * 109.87545 * 298.36441 * 7 6 4 34 34 H 1.09003 * 110.71710 * 219.45535 * 8 7 6 35 35 H 1.08993 * 110.87101 * 96.24794 * 8 7 6 36 36 H 0.96996 * 120.00298 * 272.80097 * 11 9 8 37 37 H 0.97002 * 120.00065 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.36542 * 85.25845 * 20 6 4 39 39 H 1.09001 * 110.36399 * 323.04933 * 20 6 4 40 40 H 1.07999 * 119.96182 * 0.02562 * 22 21 2 41 41 H 1.08002 * 119.99688 * 180.25641 * 23 22 21 42 42 H 1.08003 * 119.99962 * 359.95248 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 1.4224 -1.6604 1.6736 6 7 3.1593 -0.2899 1.8384 7 6 4.0525 0.7767 1.3547 8 6 5.1908 0.9252 2.3862 9 6 4.5710 0.3259 3.6762 10 1 3.9533 1.0612 4.1918 11 7 5.6118 -0.1970 4.5648 12 6 6.1368 0.5994 5.5474 13 1 5.7838 1.6132 5.6669 14 6 7.1226 0.1039 6.3896 15 7 7.6268 0.8693 7.3344 16 14 7.7326 -1.6495 6.1834 17 1 8.8788 -1.6671 5.2395 18 1 8.1676 -2.1805 7.5003 19 1 6.6362 -2.4951 5.6465 20 6 3.7043 -0.8218 3.1007 21 6 2.0323 -0.7104 -1.2304 22 6 1.7026 -2.0357 -1.4456 23 6 2.1581 -2.6880 -2.5758 24 6 2.9540 -2.0175 -3.4882 25 9 3.4043 -2.6560 -4.5905 26 6 3.2890 -0.6899 -3.2699 27 9 4.0653 -0.0332 -4.1595 28 6 2.8268 -0.0380 -2.1397 29 1 -0.3634 0.4346 -0.9313 30 1 -0.3634 -1.0237 0.0892 31 1 -0.3634 0.5891 0.8420 32 1 3.5008 1.7134 1.2739 33 1 4.4654 0.5023 0.3840 34 1 5.4444 1.9752 2.5320 35 1 6.0688 0.3566 2.0801 36 1 5.9290 -1.1073 4.4573 37 1 8.3159 0.5231 7.9228 38 1 4.3188 -1.7012 2.9078 39 1 2.8958 -1.0684 3.7889 40 1 1.0850 -2.5607 -0.7319 41 1 1.8965 -3.7221 -2.7448 42 1 3.0867 0.9962 -1.9687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019796378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:21 Heat of formation + Delta-G solvation = -102.888930 kcal Electronic energy + Delta-G solvation = -27161.899452 eV Core-core repulsion = 22970.404082 eV Total energy + Delta-G solvation = -4191.495370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.54703 -49.63052 -41.56067 -39.98809 -38.70473 -36.03814 -34.98195 -33.49215 -31.96504 -31.30241 -30.17498 -29.59404 -26.26194 -24.93021 -24.36575 -24.11220 -22.72143 -21.75398 -20.10938 -19.75128 -19.02313 -18.66330 -18.10935 -17.54635 -17.49507 -17.37284 -16.57515 -16.32825 -16.05154 -15.93615 -15.62774 -15.51768 -15.06700 -14.93496 -14.68747 -14.44796 -14.14580 -14.03050 -13.78979 -13.57772 -13.45668 -13.23224 -13.16800 -12.94452 -12.69676 -12.60320 -12.46981 -12.30078 -12.19649 -11.97317 -11.82114 -11.59315 -10.99526 -10.96122 -10.13017 -9.72945 -9.67572 -9.35025 -8.03238 -5.38044 -0.24478 -0.05931 1.39267 1.40895 1.47938 1.52069 1.86981 2.28408 2.47644 2.72298 3.20673 3.26442 3.41106 3.44404 3.53391 3.59583 3.83100 3.92164 3.98707 4.03486 4.11538 4.21476 4.31050 4.34902 4.44763 4.62290 4.69533 4.74463 4.79862 4.84025 4.90327 4.92636 4.98196 5.00283 5.15510 5.24891 5.26132 5.37557 5.39641 5.65377 5.76125 6.20302 6.51264 7.04537 7.07988 7.79671 7.97470 9.17668 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002914 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.743025 B = 9607.377014 C =10161.550388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 H 0.132 0.868 4 C 0.531 3.469 5 O -0.575 6.575 6 N -0.612 5.612 7 C 0.104 3.896 8 C -0.148 4.148 9 C 0.168 3.832 10 H 0.067 0.933 11 N -0.744 5.744 12 C -0.229 4.229 13 H 0.064 0.936 14 C -0.059 4.059 15 N -0.981 5.981 16 Si 0.949 3.051 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.255 1.255 20 C 0.103 3.897 21 C -0.058 4.058 22 C -0.088 4.088 23 C -0.119 4.119 24 C 0.051 3.949 25 F -0.140 7.140 26 C 0.055 3.945 27 F -0.137 7.137 28 C -0.105 4.105 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.647 -1.817 -24.447 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.078 4.078 3 H 0.150 0.850 4 C 0.321 3.679 5 O -0.454 6.454 6 N -0.345 5.345 7 C -0.018 4.018 8 C -0.188 4.188 9 C 0.058 3.942 10 H 0.085 0.915 11 N -0.386 5.386 12 C -0.360 4.360 13 H 0.082 0.918 14 C -0.251 4.251 15 N -0.631 5.631 16 Si 0.777 3.223 17 H -0.203 1.203 18 H -0.225 1.225 19 H -0.179 1.179 20 C -0.021 4.021 21 C -0.059 4.059 22 C -0.106 4.106 23 C -0.138 4.138 24 C 0.031 3.969 25 F -0.119 7.119 26 C 0.035 3.965 27 F -0.115 7.115 28 C -0.123 4.123 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.958 -2.150 -24.189 28.521 hybrid contribution 1.193 -1.108 0.171 1.637 sum -13.764 -3.258 -24.018 27.874 Atomic orbital electron populations 1.21740 0.90165 1.03398 1.03815 1.20311 0.99124 1.00734 0.87595 0.85031 1.20695 0.78588 0.83541 0.85097 1.90683 1.58046 1.29494 1.67184 1.48596 1.23979 1.37980 1.23943 1.22324 0.90624 0.90884 0.97968 1.23211 0.97668 1.02714 0.95232 1.21435 0.88813 0.93815 0.90116 0.91507 1.42590 1.45189 1.13399 1.37415 1.19004 1.14763 0.95673 1.06547 0.91768 1.25432 0.99909 1.01920 0.97838 1.69867 1.32309 1.38057 1.22891 0.85501 0.78899 0.81105 0.76814 1.20343 1.22497 1.17932 1.22291 0.97199 0.96926 0.85672 1.19383 0.97303 0.94098 0.95108 1.21225 0.98750 0.94238 0.96434 1.21255 0.97213 1.02142 0.93167 1.18002 1.01531 0.90471 0.86921 1.91508 1.87695 1.81626 1.51033 1.17810 0.97539 0.89836 0.91345 1.91523 1.72557 1.80582 1.66872 1.21188 0.97255 1.02508 0.91346 0.89112 0.92178 0.91443 0.88148 0.89421 0.89796 0.91351 0.80065 0.93312 0.92131 0.91632 0.83761 0.81826 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.69 71.98 0.63 -1.05 16 2 C -0.06 -0.79 2.53 -12.29 -0.03 -0.82 16 3 H 0.13 1.10 6.65 -2.39 -0.02 1.08 16 4 C 0.53 12.31 6.49 87.66 0.57 12.88 16 5 O -0.57 -17.58 15.92 -3.05 -0.05 -17.63 16 6 N -0.61 -14.60 3.34 -811.11 -2.71 -17.31 16 7 C 0.10 1.90 6.22 86.68 0.54 2.44 16 8 C -0.15 -3.89 6.65 31.78 0.21 -3.68 16 9 C 0.17 5.67 3.71 46.38 0.17 5.84 16 10 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 11 N -0.74 -32.40 5.05 -316.38 -1.60 -34.00 16 12 C -0.23 -12.35 10.44 84.03 0.88 -11.48 16 13 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 14 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 15 N -0.98 -61.27 13.97 21.65 0.30 -60.97 16 16 Si 0.95 44.31 27.73 68.60 1.90 46.22 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 19 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 20 C 0.10 3.13 6.53 86.85 0.57 3.70 16 21 C -0.06 -0.82 4.77 -19.87 -0.09 -0.92 16 22 C -0.09 -1.38 8.84 22.27 0.20 -1.19 16 23 C -0.12 -1.81 10.02 22.30 0.22 -1.59 16 24 C 0.05 0.93 7.31 22.41 0.16 1.10 16 25 F -0.14 -2.96 17.18 44.97 0.77 -2.19 16 26 C 0.05 0.95 7.31 22.41 0.16 1.12 16 27 F -0.14 -2.73 17.18 44.97 0.77 -1.96 16 28 C -0.10 -1.33 9.65 22.30 0.22 -1.12 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.93 7.12 -2.39 -0.02 0.92 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.25 7.64 -2.38 -0.02 1.24 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.37 15.57 5.62 -92.71 -0.52 15.05 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.06 1.89 8.00 -2.38 -0.02 1.87 16 39 H 0.07 2.15 8.09 -2.39 -0.02 2.13 16 40 H 0.14 2.39 7.14 -2.91 -0.02 2.37 16 41 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 42 H 0.18 1.22 7.94 -2.91 -0.02 1.19 16 Total: -1.00 -70.61 357.22 4.74 -65.87 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.47 Total: 19.62 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.87 Total: 2.33 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -4.00 Total: -112.27 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 1.55 Total: -4.15 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.22 kcal Total: -70.61 4.74 -65.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019796378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.020 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds