Wall clock time and date at job start Tue Mar 31 2020 14:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39903 * 109.47370 * 2 1 4 4 F 1.39901 * 109.47532 * 239.99891 * 2 1 3 5 5 C 1.50700 * 109.47362 * 119.99648 * 2 1 3 6 6 C 1.38367 * 119.85378 * 89.99983 * 5 2 1 7 7 C 1.37948 * 120.14321 * 180.02562 * 6 5 2 8 8 C 1.39576 * 119.85868 * 0.02562 * 7 6 5 9 9 C 1.47841 * 120.14815 * 179.97438 * 8 7 6 10 10 O 1.21555 * 120.00040 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00485 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00467 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.90692 * 27.30694 * 12 11 9 14 14 C 1.53785 * 113.61653 * 158.55847 * 12 11 9 15 15 C 1.53780 * 87.08054 * 89.11646 * 14 12 11 16 16 H 1.09003 * 113.61449 * 140.06593 * 15 14 12 17 17 N 1.46502 * 113.61660 * 270.88517 * 15 14 12 18 18 C 1.36929 * 119.99984 * 277.78111 * 17 15 14 19 19 H 1.08004 * 120.00309 * 0.27228 * 18 17 15 20 20 C 1.38819 * 120.00094 * 180.27671 * 18 17 15 21 21 N 1.31616 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99650 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46689 * 90.00468 * 22 20 18 24 24 H 1.48495 * 109.46768 * 210.00042 * 22 20 18 25 25 H 1.48499 * 109.47275 * 330.00312 * 22 20 18 26 26 C 1.53780 * 113.61716 * 256.05699 * 12 11 9 27 27 C 1.39574 * 119.70922 * 0.25723 * 8 7 6 28 28 C 1.37963 * 119.85246 * 359.46626 * 27 8 7 29 29 H 1.08996 * 109.47146 * 299.99672 * 1 2 3 30 30 H 1.08994 * 109.47341 * 59.99988 * 1 2 3 31 31 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.92242 * 0.02562 * 6 5 2 33 33 H 1.08008 * 120.06873 * 179.97438 * 7 6 5 34 34 H 0.97004 * 119.99655 * 0.02562 * 11 9 8 35 35 H 1.09000 * 113.60997 * 334.57315 * 14 12 11 36 36 H 1.08996 * 113.69423 * 203.67866 * 14 12 11 37 37 H 0.97005 * 119.99810 * 98.05814 * 17 15 14 38 38 H 0.96999 * 120.00300 * 180.02562 * 21 20 18 39 39 H 1.08996 * 113.61625 * 156.33135 * 26 12 11 40 40 H 1.08998 * 113.61127 * 25.43095 * 26 12 11 41 41 H 1.07993 * 120.07640 * 179.72613 * 27 8 7 42 42 H 1.07998 * 119.92952 * 180.28033 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0324 -0.7103 1.2305 6 6 2.2620 -2.0743 1.1929 7 6 2.7214 -2.7306 2.3159 8 6 2.9540 -2.0159 3.4920 9 6 3.4458 -2.7130 4.6995 10 8 3.6489 -3.9111 4.6694 11 7 3.6690 -2.0201 5.8338 12 6 4.1569 -2.7107 7.0301 13 1 4.7334 -3.6061 6.7977 14 6 4.8463 -1.7793 8.0411 15 6 3.4589 -1.5615 8.6675 16 1 3.4721 -1.5277 9.7569 17 7 2.7145 -0.4486 8.0729 18 6 2.9596 0.8350 8.4817 19 1 3.7048 1.0275 9.2394 20 6 2.2502 1.8890 7.9223 21 7 2.4854 3.1228 8.3157 22 14 0.9618 1.5561 6.6114 23 1 -0.3571 1.3376 7.2579 24 1 0.8765 2.7209 5.6942 25 1 1.3417 0.3454 5.8400 26 6 3.0722 -2.9362 8.0967 27 6 2.7148 -0.6412 3.5249 28 6 2.2608 0.0041 2.3932 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.0811 -2.6262 0.2824 33 1 2.8998 -3.7954 2.2854 34 1 3.5066 -1.0641 5.8580 35 1 5.2676 -0.8808 7.5901 36 1 5.5477 -2.2907 8.7002 37 1 2.0452 -0.6215 7.3924 38 1 1.9895 3.8593 7.9251 39 1 3.2881 -3.7652 8.7705 40 1 2.0613 -2.9716 7.6906 41 1 2.8885 -0.0832 4.4330 42 1 2.0796 1.0685 2.4159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023179987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:17 Heat of formation + Delta-G solvation = -71.242518 kcal Electronic energy + Delta-G solvation = -27635.970749 eV Core-core repulsion = 23445.847670 eV Total energy + Delta-G solvation = -4190.123079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.27631 -47.28133 -40.44979 -39.15762 -37.80409 -33.90425 -33.45411 -32.64136 -31.18143 -30.61550 -29.90721 -25.60444 -25.29840 -24.36221 -23.01115 -22.67297 -21.69181 -20.26697 -19.26036 -18.23069 -17.77238 -17.62052 -17.33424 -16.59915 -16.03724 -15.28163 -15.12355 -14.85119 -14.63980 -14.60595 -14.16197 -14.08840 -13.98121 -13.83029 -13.60063 -13.44703 -13.06060 -12.91376 -12.88176 -12.69363 -12.40466 -12.17446 -12.10803 -11.78025 -11.36537 -11.23599 -11.10954 -10.96942 -10.54059 -10.33499 -9.90545 -9.76099 -9.72733 -9.27864 -9.25039 -9.05900 -8.75844 -7.44056 -5.92313 -3.29998 0.47243 1.10787 2.70180 3.11292 3.21729 3.24982 3.30949 3.34270 3.62670 3.76785 4.10533 4.36333 4.40440 4.63129 4.65992 4.74233 4.91899 5.02725 5.05577 5.08488 5.10327 5.18368 5.29377 5.38280 5.44500 5.48889 5.55339 5.66521 5.73823 5.95177 5.99786 6.06303 6.09390 6.14636 6.17041 6.39678 6.52192 6.53957 6.66372 6.87662 7.69533 7.85405 8.27158 8.29452 9.03619 9.75123 9.94507 11.25553 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.004442 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.682045 B = 6302.014616 C = 8171.838219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.336 3.664 3 F -0.192 7.192 4 F -0.195 7.195 5 C -0.136 4.136 6 C -0.098 4.098 7 C -0.061 4.061 8 C -0.114 4.114 9 C 0.556 3.444 10 O -0.544 6.544 11 N -0.696 5.696 12 C 0.124 3.876 13 H 0.094 0.906 14 C -0.174 4.174 15 C 0.166 3.834 16 H 0.060 0.940 17 N -0.735 5.735 18 C -0.248 4.248 19 H 0.094 0.906 20 C 0.009 3.991 21 N -0.927 5.927 22 Si 0.875 3.125 23 H -0.283 1.283 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.164 4.164 27 C -0.083 4.083 28 C -0.093 4.093 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.411 0.589 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.360 0.640 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.139 0.861 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 -9.803 -14.297 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.300 3.700 3 F -0.173 7.173 4 F -0.176 7.176 5 C -0.137 4.137 6 C -0.117 4.117 7 C -0.080 4.080 8 C -0.117 4.117 9 C 0.342 3.658 10 O -0.423 6.423 11 N -0.349 5.349 12 C 0.018 3.982 13 H 0.112 0.888 14 C -0.215 4.215 15 C 0.056 3.944 16 H 0.078 0.922 17 N -0.379 5.379 18 C -0.378 4.378 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.574 5.574 22 Si 0.706 3.294 23 H -0.210 1.210 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.203 4.203 27 C -0.102 4.102 28 C -0.111 4.111 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.250 0.750 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.194 0.806 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.157 0.843 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.750 -10.376 -14.196 17.671 hybrid contribution -0.964 0.593 -0.987 1.502 sum -2.714 -9.784 -15.184 18.266 Atomic orbital electron populations 1.22781 0.90402 1.05840 1.05705 1.19475 0.93796 0.75118 0.81599 1.93044 1.90608 1.36991 1.96687 1.93021 1.90662 1.80929 1.52950 1.20425 1.03207 0.95298 0.94815 1.20872 0.98870 0.92900 0.99009 1.21231 0.95290 1.00803 0.90683 1.20190 1.02560 0.94029 0.94959 1.18224 0.77724 0.86777 0.83028 1.90735 1.52569 1.14251 1.84700 1.45882 1.65764 1.12957 1.10253 1.21812 0.96327 0.96239 0.83780 0.88826 1.23981 0.99784 0.99617 0.98121 1.21170 0.90607 0.86376 0.96258 0.92220 1.42612 1.45110 1.03089 1.47059 1.19058 1.18620 0.81067 1.19012 0.88831 1.24679 0.99290 0.95158 0.99654 1.69678 1.44124 0.98005 1.45601 0.86764 0.83210 0.76895 0.82580 1.20954 1.21330 1.20293 1.23731 0.99306 0.98776 0.98460 1.21591 0.96084 0.93588 0.98897 1.20921 0.98010 1.00711 0.91497 0.88861 0.89554 0.88975 0.84491 0.83878 0.75011 0.90243 0.89519 0.80593 0.92852 0.88894 0.91483 0.84289 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 9.37 37.16 0.35 -1.13 16 2 C 0.34 3.59 2.32 -27.88 -0.06 3.52 16 3 F -0.19 -2.37 16.20 2.25 0.04 -2.33 16 4 F -0.19 -2.18 16.19 2.25 0.04 -2.14 16 5 C -0.14 -1.60 5.00 -104.53 -0.52 -2.12 16 6 C -0.10 -1.09 9.38 -39.64 -0.37 -1.46 16 7 C -0.06 -0.77 9.59 -39.19 -0.38 -1.15 16 8 C -0.11 -1.67 5.87 -104.97 -0.62 -2.29 16 9 C 0.56 9.17 7.77 -12.33 -0.10 9.08 16 10 O -0.54 -10.01 16.00 5.32 0.09 -9.92 16 11 N -0.70 -11.40 4.94 -53.96 -0.27 -11.66 16 12 C 0.12 1.91 4.27 -67.12 -0.29 1.63 16 13 H 0.09 1.42 7.55 -51.93 -0.39 1.03 16 14 C -0.17 -2.72 7.61 -25.92 -0.20 -2.92 16 15 C 0.17 2.93 4.53 -67.12 -0.30 2.63 16 16 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 17 N -0.74 -15.69 4.10 -52.63 -0.22 -15.91 16 18 C -0.25 -6.41 10.47 -15.06 -0.16 -6.57 16 19 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -27.41 13.97 55.49 0.78 -26.63 16 22 Si 0.88 19.98 27.74 -169.99 -4.71 15.26 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -5.55 5.51 56.52 0.31 -5.24 16 26 C -0.16 -2.46 7.58 -25.92 -0.20 -2.66 16 27 C -0.08 -1.20 9.53 -39.18 -0.37 -1.57 16 28 C -0.09 -1.22 9.38 -39.64 -0.37 -1.59 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.14 1.19 7.59 -52.49 -0.40 0.80 16 33 H 0.14 1.68 7.65 -52.48 -0.40 1.28 16 34 H 0.41 7.03 5.31 -40.82 -0.22 6.81 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.36 7.58 5.07 -40.82 -0.21 7.37 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.08 8.12 -51.93 -0.42 0.65 16 41 H 0.14 2.13 5.41 -52.49 -0.28 1.84 16 42 H 0.14 1.69 7.59 -52.49 -0.40 1.29 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -30.29 354.70 -7.93 -38.22 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -5.33 Total: 16.24 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.68 Total: -6.46 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.29 Total: -54.20 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.07 Total: -4.48 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.71 Total: 15.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.29 -7.93 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023179987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.023 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds