Wall clock time and date at job start Tue Mar 31 2020 14:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39903 * 109.47370 * 2 1 4 4 F 1.39901 * 109.47532 * 239.99891 * 2 1 3 5 5 C 1.50700 * 109.47362 * 119.99648 * 2 1 3 6 6 C 1.38367 * 119.85378 * 89.99983 * 5 2 1 7 7 C 1.37948 * 120.14321 * 180.02562 * 6 5 2 8 8 C 1.39576 * 119.85868 * 0.02562 * 7 6 5 9 9 C 1.47841 * 120.14815 * 179.97438 * 8 7 6 10 10 O 1.21555 * 120.00040 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00485 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00467 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.90692 * 27.30694 * 12 11 9 14 14 C 1.53785 * 113.61653 * 158.55847 * 12 11 9 15 15 C 1.53780 * 87.08054 * 89.11646 * 14 12 11 16 16 H 1.09003 * 113.61449 * 140.06593 * 15 14 12 17 17 N 1.46502 * 113.61660 * 270.88517 * 15 14 12 18 18 C 1.36929 * 119.99984 * 277.78111 * 17 15 14 19 19 H 1.08004 * 120.00309 * 0.27228 * 18 17 15 20 20 C 1.38819 * 120.00094 * 180.27671 * 18 17 15 21 21 N 1.31616 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99650 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46689 * 90.00468 * 22 20 18 24 24 H 1.48495 * 109.46768 * 210.00042 * 22 20 18 25 25 H 1.48499 * 109.47275 * 330.00312 * 22 20 18 26 26 C 1.53780 * 113.61716 * 256.05699 * 12 11 9 27 27 C 1.39574 * 119.70922 * 0.25723 * 8 7 6 28 28 C 1.37963 * 119.85246 * 359.46626 * 27 8 7 29 29 H 1.08996 * 109.47146 * 299.99672 * 1 2 3 30 30 H 1.08994 * 109.47341 * 59.99988 * 1 2 3 31 31 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.92242 * 0.02562 * 6 5 2 33 33 H 1.08008 * 120.06873 * 179.97438 * 7 6 5 34 34 H 0.97004 * 119.99655 * 0.02562 * 11 9 8 35 35 H 1.09000 * 113.60997 * 334.57315 * 14 12 11 36 36 H 1.08996 * 113.69423 * 203.67866 * 14 12 11 37 37 H 0.97005 * 119.99810 * 98.05814 * 17 15 14 38 38 H 0.96999 * 120.00300 * 180.02562 * 21 20 18 39 39 H 1.08996 * 113.61625 * 156.33135 * 26 12 11 40 40 H 1.08998 * 113.61127 * 25.43095 * 26 12 11 41 41 H 1.07993 * 120.07640 * 179.72613 * 27 8 7 42 42 H 1.07998 * 119.92952 * 180.28033 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0324 -0.7103 1.2305 6 6 2.2620 -2.0743 1.1929 7 6 2.7214 -2.7306 2.3159 8 6 2.9540 -2.0159 3.4920 9 6 3.4458 -2.7130 4.6995 10 8 3.6489 -3.9111 4.6694 11 7 3.6690 -2.0201 5.8338 12 6 4.1569 -2.7107 7.0301 13 1 4.7334 -3.6061 6.7977 14 6 4.8463 -1.7793 8.0411 15 6 3.4589 -1.5615 8.6675 16 1 3.4721 -1.5277 9.7569 17 7 2.7145 -0.4486 8.0729 18 6 2.9596 0.8350 8.4817 19 1 3.7048 1.0275 9.2394 20 6 2.2502 1.8890 7.9223 21 7 2.4854 3.1228 8.3157 22 14 0.9618 1.5561 6.6114 23 1 -0.3571 1.3376 7.2579 24 1 0.8765 2.7209 5.6942 25 1 1.3417 0.3454 5.8400 26 6 3.0722 -2.9362 8.0967 27 6 2.7148 -0.6412 3.5249 28 6 2.2608 0.0041 2.3932 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.0811 -2.6262 0.2824 33 1 2.8998 -3.7954 2.2854 34 1 3.5066 -1.0641 5.8580 35 1 5.2676 -0.8808 7.5901 36 1 5.5477 -2.2907 8.7002 37 1 2.0452 -0.6215 7.3924 38 1 1.9895 3.8593 7.9251 39 1 3.2881 -3.7652 8.7705 40 1 2.0613 -2.9716 7.6906 41 1 2.8885 -0.0832 4.4330 42 1 2.0796 1.0685 2.4159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023179987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:16 Heat of formation + Delta-G solvation = -88.714621 kcal Electronic energy + Delta-G solvation = -27636.728396 eV Core-core repulsion = 23445.847670 eV Total energy + Delta-G solvation = -4190.880726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.12893 -48.14490 -41.65557 -40.31020 -39.07179 -35.59055 -34.65767 -33.83687 -32.53991 -32.08456 -30.79471 -26.88753 -26.49527 -25.82712 -24.23369 -23.80812 -22.83561 -21.43867 -20.69540 -19.52800 -19.28403 -18.60390 -18.38379 -17.38357 -17.28272 -16.71253 -16.35817 -16.18709 -15.97387 -15.82821 -15.53463 -15.26236 -15.02083 -14.86633 -14.68031 -14.42948 -14.34453 -14.12754 -13.83182 -13.63467 -13.47109 -13.31070 -13.28008 -13.13400 -12.89190 -12.56660 -12.34486 -12.09100 -12.04886 -11.92671 -11.79805 -11.18555 -11.14222 -10.87915 -10.33790 -10.22810 -10.02060 -9.30966 -8.02009 -5.37071 -0.55645 0.12875 1.29833 1.39172 1.45483 1.56735 2.03942 2.45698 2.47606 2.58096 2.99146 3.27676 3.27727 3.44590 3.57662 3.61069 3.67300 3.74411 3.76198 3.84958 4.11217 4.12874 4.22473 4.30744 4.44659 4.56011 4.64003 4.78278 4.79343 4.87088 4.92765 4.95669 4.99489 5.00939 5.09548 5.15480 5.20437 5.30841 5.53713 5.59234 5.81965 6.21893 6.40904 7.01985 7.06368 7.81410 8.00090 9.19050 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.004442 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.682045 B = 6302.014616 C = 8171.838219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.332 3.668 3 F -0.205 7.205 4 F -0.197 7.197 5 C -0.132 4.132 6 C -0.087 4.087 7 C -0.059 4.059 8 C -0.131 4.131 9 C 0.556 3.444 10 O -0.566 6.566 11 N -0.700 5.700 12 C 0.122 3.878 13 H 0.103 0.897 14 C -0.162 4.162 15 C 0.145 3.855 16 H 0.058 0.942 17 N -0.736 5.736 18 C -0.228 4.228 19 H 0.060 0.940 20 C -0.057 4.057 21 N -0.980 5.980 22 Si 0.939 3.061 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.240 1.240 26 C -0.145 4.145 27 C -0.095 4.095 28 C -0.101 4.101 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.406 0.594 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.364 0.636 38 H 0.257 0.743 39 H 0.126 0.874 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -12.052 -16.209 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.296 3.704 3 F -0.186 7.186 4 F -0.178 7.178 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.078 4.078 8 C -0.134 4.134 9 C 0.344 3.656 10 O -0.447 6.447 11 N -0.352 5.352 12 C 0.017 3.983 13 H 0.121 0.879 14 C -0.202 4.202 15 C 0.037 3.963 16 H 0.076 0.924 17 N -0.380 5.380 18 C -0.358 4.358 19 H 0.078 0.922 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.767 3.233 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.164 1.164 26 C -0.184 4.184 27 C -0.113 4.113 28 C -0.119 4.119 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.244 0.756 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.198 0.802 38 H 0.066 0.934 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.143 0.857 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.633 -12.689 -16.107 20.674 hybrid contribution -0.584 1.255 -0.345 1.427 sum -3.217 -11.434 -16.452 20.292 Atomic orbital electron populations 1.22831 0.87855 1.07228 1.06543 1.19748 0.95436 0.74321 0.80875 1.93024 1.90945 1.37891 1.96696 1.93017 1.90894 1.80913 1.52991 1.20619 1.02219 0.95694 0.94827 1.21147 0.97243 0.92665 0.99413 1.21385 0.94822 1.01209 0.90353 1.20137 1.04047 0.94165 0.95039 1.18491 0.77162 0.86549 0.83414 1.90712 1.53781 1.15082 1.85103 1.45963 1.65730 1.12737 1.10727 1.21905 0.96557 0.96242 0.83635 0.87942 1.23912 0.98957 0.99080 0.98268 1.21460 0.91876 0.86802 0.96171 0.92417 1.42533 1.45764 1.02403 1.47269 1.18962 1.16650 0.83106 1.17122 0.92180 1.25415 1.02111 0.94790 1.02578 1.69865 1.46106 0.99186 1.47854 0.85702 0.79632 0.78032 0.79960 1.21591 1.21789 1.16412 1.23703 0.98736 0.97746 0.98247 1.21484 0.97256 0.93589 0.98999 1.21006 0.98163 1.01083 0.91642 0.88628 0.88197 0.87338 0.81677 0.83035 0.75566 0.92574 0.86442 0.80223 0.93378 0.85592 0.92183 0.85659 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 9.37 71.98 0.67 -1.65 16 2 C 0.33 6.24 2.32 29.85 0.07 6.31 16 3 F -0.20 -4.69 16.20 44.97 0.73 -3.96 16 4 F -0.20 -3.87 16.19 44.97 0.73 -3.14 16 5 C -0.13 -2.79 5.00 -19.80 -0.10 -2.89 16 6 C -0.09 -1.66 9.38 22.23 0.21 -1.45 16 7 C -0.06 -1.35 9.59 22.52 0.22 -1.13 16 8 C -0.13 -3.65 5.87 -20.09 -0.12 -3.77 16 9 C 0.56 17.65 7.77 86.79 0.67 18.33 16 10 O -0.57 -19.98 16.00 -3.89 -0.06 -20.05 16 11 N -0.70 -22.16 4.94 -442.92 -2.19 -24.34 16 12 C 0.12 3.53 4.27 45.52 0.19 3.72 16 13 H 0.10 2.85 7.55 -2.39 -0.02 2.83 16 14 C -0.16 -4.82 7.61 31.12 0.24 -4.59 16 15 C 0.15 4.96 4.53 45.52 0.21 5.16 16 16 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 17 N -0.74 -31.12 4.10 -320.43 -1.31 -32.43 16 18 C -0.23 -12.02 10.47 84.04 0.88 -11.14 16 19 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 20 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 21 N -0.98 -60.02 13.97 21.65 0.30 -59.72 16 22 Si 0.94 41.71 27.74 68.60 1.90 43.61 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.24 -9.02 5.51 99.48 0.55 -8.48 16 26 C -0.15 -4.01 7.58 31.12 0.24 -3.77 16 27 C -0.09 -2.63 9.53 22.53 0.21 -2.41 16 28 C -0.10 -2.48 9.38 22.23 0.21 -2.27 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.17 2.21 7.59 -2.91 -0.02 2.19 16 33 H 0.15 3.20 7.65 -2.91 -0.02 3.17 16 34 H 0.41 13.66 5.31 -92.71 -0.49 13.16 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.36 14.88 5.07 -92.70 -0.47 14.41 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.06 1.77 8.12 -2.39 -0.02 1.76 16 41 H 0.13 3.77 5.41 -2.91 -0.02 3.76 16 42 H 0.14 3.31 7.59 -2.91 -0.02 3.28 16 Total: -1.00 -67.02 354.70 4.32 -62.71 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.05 Total: 41.56 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.27 Total: -4.23 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -3.20 Total: -116.50 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.05 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 1.46 Total: -7.10 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.90 Total: 43.61 kcal Total: -67.02 4.32 -62.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023179987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.008 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds