Wall clock time and date at job start Tue Mar 31 2020 14:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.49841 * 2 1 4 4 C 1.53196 * 109.49858 * 239.93758 * 2 1 3 5 5 N 1.46931 * 108.77480 * 185.41220 * 4 2 1 6 6 C 1.34774 * 120.62853 * 233.58531 * 5 4 2 7 7 O 1.21595 * 120.00099 * 5.79719 * 6 5 4 8 8 C 1.47568 * 120.00036 * 185.79906 * 6 5 4 9 9 C 1.39733 * 120.13869 * 53.86419 * 8 6 5 10 10 C 1.37742 * 119.90466 * 179.74454 * 9 8 6 11 11 C 1.38757 * 120.18796 * 0.25178 * 10 9 8 12 12 F 1.35104 * 119.85760 * 179.97438 * 11 10 9 13 13 C 1.38495 * 120.28970 * 359.97438 * 11 10 9 14 14 C 1.38199 * 120.09133 * 359.97438 * 13 11 10 15 15 F 1.35095 * 120.09623 * 179.97438 * 14 13 11 16 16 C 1.46917 * 118.74002 * 53.85528 * 5 4 2 17 17 C 1.53624 * 108.54737 * 306.09803 * 16 5 4 18 18 C 1.53033 * 109.50211 * 120.09405 * 2 1 3 19 19 H 1.08997 * 109.46550 * 301.34075 * 18 2 1 20 20 N 1.46510 * 109.45826 * 61.29626 * 18 2 1 21 21 C 1.36938 * 120.00091 * 204.99895 * 20 18 2 22 22 H 1.07999 * 119.99766 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99820 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00049 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00273 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47248 * 89.99370 * 25 23 21 27 27 H 1.48497 * 109.47114 * 209.99885 * 25 23 21 28 28 H 1.48512 * 109.46700 * 329.99821 * 25 23 21 29 29 H 1.09004 * 109.46910 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47298 * 300.06300 * 1 2 3 31 31 H 1.09003 * 109.47370 * 60.06532 * 1 2 3 32 32 H 1.08999 * 109.58478 * 65.62406 * 4 2 1 33 33 H 1.08992 * 109.58238 * 305.19599 * 4 2 1 34 34 H 1.07998 * 120.04895 * 0.02562 * 9 8 6 35 35 H 1.07994 * 119.90320 * 180.27066 * 10 9 8 36 36 H 1.07998 * 119.95484 * 179.97438 * 13 11 10 37 37 H 1.09005 * 109.58946 * 65.92657 * 16 5 4 38 38 H 1.09003 * 109.58976 * 186.35163 * 16 5 4 39 39 H 1.09002 * 109.63392 * 294.86278 * 17 16 5 40 40 H 1.09004 * 109.43470 * 174.72332 * 17 16 5 41 41 H 0.96994 * 119.99490 * 25.00620 * 20 18 2 42 42 H 0.97000 * 120.00200 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5046 -0.8287 -1.1698 6 6 4.2811 -0.3857 -2.1784 7 8 3.7806 0.2014 -3.1183 8 6 5.7387 -0.6130 -2.1421 9 6 6.2432 -1.9040 -1.9649 10 6 7.6046 -2.1114 -1.9371 11 6 8.4765 -1.0414 -2.0792 12 9 9.8106 -1.2524 -2.0504 13 6 7.9851 0.2421 -2.2506 14 6 6.6213 0.4635 -2.2814 15 9 6.1418 1.7155 -2.4481 16 6 4.1051 -1.4316 0.0278 17 6 3.5709 -0.6953 1.2658 18 6 2.0408 -0.7233 1.2481 19 1 1.6582 -0.2251 2.1388 20 7 1.5784 -2.1134 1.2302 21 6 1.4483 -2.8069 2.4038 22 1 1.6862 -2.3289 3.3426 23 6 1.0096 -4.1237 2.3869 24 7 0.8850 -4.7904 3.5148 25 14 0.5974 -4.9501 0.7631 26 1 1.8126 -5.6087 0.2203 27 1 -0.4620 -5.9677 0.9805 28 1 0.1138 -3.9305 -0.2024 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3634 0.5128 -0.8906 32 1 1.7637 -0.1573 -2.1389 33 1 1.6053 -1.7211 -1.2985 34 1 5.5667 -2.7386 -1.8545 35 1 7.9945 -3.1097 -1.8045 36 1 8.6686 1.0710 -2.3603 37 1 3.8339 -2.4860 0.0813 38 1 5.1897 -1.3330 -0.0180 39 1 3.9159 0.3387 1.2542 40 1 3.9335 -1.1902 2.1667 41 1 1.3644 -2.5424 0.3870 42 1 0.5781 -5.7105 3.5030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036276342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:34 Heat of formation + Delta-G solvation = -97.575464 kcal Electronic energy + Delta-G solvation = -28232.963576 eV Core-core repulsion = 24041.698615 eV Total energy + Delta-G solvation = -4191.264961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.20129 -50.12572 -41.70464 -39.80488 -38.89269 -36.01405 -34.59182 -33.19052 -32.27252 -31.74542 -31.43779 -27.78750 -26.82819 -25.15054 -24.47982 -24.16667 -23.07008 -21.42583 -20.02464 -19.77569 -19.27248 -18.61781 -18.27255 -17.48965 -17.02313 -16.86598 -16.69137 -16.42955 -16.21770 -16.00286 -15.72419 -15.48635 -15.35596 -15.10988 -14.94474 -14.53751 -14.45511 -14.01215 -13.68008 -13.55130 -13.41337 -13.27196 -12.93915 -12.87735 -12.68699 -12.62924 -12.44405 -12.05416 -11.98687 -11.95272 -11.68191 -11.26053 -11.15529 -10.89744 -10.24186 -9.95218 -9.72811 -9.23128 -7.95759 -5.27421 -0.51245 -0.14540 1.36536 1.39045 1.41103 1.48660 1.78456 2.22186 2.51851 2.64779 3.13604 3.22107 3.36493 3.45567 3.60675 3.75082 3.79503 3.94083 3.96867 3.99994 4.23274 4.30307 4.38478 4.53887 4.56344 4.58619 4.66891 4.73231 4.76372 4.86136 4.91181 4.91571 4.97197 5.09975 5.14090 5.23943 5.24610 5.40944 5.53033 5.56137 5.86336 6.23040 6.28169 6.89537 7.14604 7.90374 8.09663 9.26096 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.004053 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.542183 B = 6907.372982 C = 7882.343480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.086 0.914 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.561 3.439 7 O -0.570 6.570 8 C -0.184 4.184 9 C -0.027 4.027 10 C -0.150 4.150 11 C 0.151 3.849 12 F -0.126 7.126 13 C -0.188 4.188 14 C 0.158 3.842 15 F -0.132 7.132 16 C 0.113 3.887 17 C -0.143 4.143 18 C 0.178 3.822 19 H 0.049 0.951 20 N -0.740 5.740 21 C -0.214 4.214 22 H 0.060 0.940 23 C -0.057 4.057 24 N -0.985 5.985 25 Si 0.938 3.062 26 H -0.276 1.276 27 H -0.304 1.304 28 H -0.255 1.255 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.163 0.837 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.363 0.637 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.512 8.886 -12.675 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.004 4.004 5 N -0.323 5.323 6 C 0.350 3.650 7 O -0.450 6.450 8 C -0.188 4.188 9 C -0.045 4.045 10 C -0.169 4.169 11 C 0.131 3.869 12 F -0.104 7.104 13 C -0.208 4.208 14 C 0.137 3.863 15 F -0.111 7.111 16 C -0.008 4.008 17 C -0.184 4.184 18 C 0.070 3.930 19 H 0.067 0.933 20 N -0.384 5.384 21 C -0.345 4.345 22 H 0.078 0.922 23 C -0.249 4.249 24 N -0.636 5.636 25 Si 0.767 3.233 26 H -0.202 1.202 27 H -0.231 1.231 28 H -0.180 1.180 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.180 0.820 35 H 0.196 0.804 36 H 0.191 0.809 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.197 0.803 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.262 9.203 -12.941 21.344 hybrid contribution -0.487 -0.634 -0.420 0.903 sum 13.776 8.569 -13.360 21.016 Atomic orbital electron populations 1.21650 0.93662 1.01836 1.02182 1.21672 0.96924 0.99613 0.93996 0.89577 1.21663 0.78604 1.00852 0.99293 1.48107 1.06953 1.59214 1.18058 1.18315 0.86620 0.78073 0.82025 1.90780 1.75526 1.42939 1.35791 1.19976 0.92635 0.95356 1.10829 1.21230 0.95874 0.94676 0.92735 1.21431 0.91975 1.00616 1.02859 1.17534 0.77771 0.93167 0.98404 1.91572 1.30077 1.95484 1.93255 1.21094 0.93649 0.98770 1.07251 1.17352 0.91404 0.78713 0.98805 1.91549 1.88874 1.38359 1.92289 1.21966 0.98505 0.97540 0.82827 1.22452 0.98050 1.00292 0.97602 1.20381 0.92305 0.84192 0.96117 0.93270 1.42763 1.80688 1.10642 1.04334 1.18984 1.34832 0.93818 0.86850 0.92175 1.25295 1.02825 0.97677 0.99087 1.69861 1.55665 1.11079 1.27018 0.85671 0.77809 0.78615 0.81251 1.20184 1.23124 1.18009 0.93635 0.92150 0.91327 0.89221 0.91845 0.81989 0.80395 0.80931 0.91002 0.88138 0.90973 0.91254 0.80255 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.05 71.98 0.65 -3.09 16 2 C -0.10 -2.89 2.67 -10.72 -0.03 -2.92 16 3 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 4 C 0.12 3.41 5.43 86.36 0.47 3.88 16 5 N -0.59 -16.39 2.97 -821.78 -2.44 -18.83 16 6 C 0.56 16.30 6.88 86.71 0.60 16.89 16 7 O -0.57 -20.48 16.28 -4.01 -0.07 -20.55 16 8 C -0.18 -4.20 4.62 -20.05 -0.09 -4.29 16 9 C -0.03 -0.45 7.76 22.51 0.17 -0.27 16 10 C -0.15 -1.96 10.01 22.28 0.22 -1.74 16 11 C 0.15 2.23 7.30 22.46 0.16 2.39 16 12 F -0.13 -1.90 17.26 44.97 0.78 -1.12 16 13 C -0.19 -3.05 9.99 22.32 0.22 -2.83 16 14 C 0.16 3.47 7.27 22.66 0.16 3.63 16 15 F -0.13 -3.49 16.65 44.97 0.75 -2.74 16 16 C 0.11 2.95 5.33 86.51 0.46 3.42 16 17 C -0.14 -4.14 5.79 30.82 0.18 -3.96 16 18 C 0.18 5.94 2.53 45.01 0.11 6.05 16 19 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 20 N -0.74 -30.29 3.44 -322.81 -1.11 -31.40 16 21 C -0.21 -11.06 10.41 84.03 0.87 -10.19 16 22 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 23 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 24 N -0.98 -60.42 13.97 21.65 0.30 -60.11 16 25 Si 0.94 42.84 27.74 68.60 1.90 44.74 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.26 -10.54 6.52 99.48 0.65 -9.90 16 29 H 0.04 1.44 7.53 -2.39 -0.02 1.42 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.62 7.00 -2.39 -0.02 2.61 16 33 H 0.06 1.92 6.64 -2.39 -0.02 1.90 16 34 H 0.16 2.36 7.74 -2.91 -0.02 2.33 16 35 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.07 2.08 7.74 -2.38 -0.02 2.06 16 38 H 0.10 2.13 5.37 -2.39 -0.01 2.11 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.36 14.59 3.78 -92.71 -0.35 14.23 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -67.29 346.64 5.41 -61.89 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.65 Total: 23.87 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 4.64 Total: 4.25 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -3.24 Total: -110.34 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.07 Total: -20.55 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 1.53 Total: -3.86 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Total: -67.29 5.41 -61.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036276342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.689 kcal (2) G-P(sol) polarization free energy of solvation -67.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds