Wall clock time and date at job start Tue Mar 31 2020 15:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47474 * 2 1 4 4 C 1.50694 * 109.47473 * 239.99626 * 2 1 3 5 5 O 1.21285 * 120.00252 * 255.49518 * 4 2 1 6 6 N 1.34774 * 120.00040 * 75.49074 * 4 2 1 7 7 C 1.46504 * 120.00161 * 183.82162 * 6 4 2 8 8 C 1.46504 * 119.99977 * 3.82148 * 6 4 2 9 9 C 1.53947 * 113.74384 * 211.41711 * 8 6 4 10 10 N 1.47812 * 86.03505 * 222.08372 * 9 8 6 11 11 C 1.36936 * 134.45628 * 204.64226 * 10 9 8 12 12 H 1.07996 * 120.00017 * 179.86865 * 11 10 9 13 13 C 1.38816 * 119.99630 * 359.86789 * 11 10 9 14 14 N 1.31616 * 120.00203 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99542 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47162 * 90.00462 * 15 13 11 17 17 H 1.48507 * 109.46838 * 210.00032 * 15 13 11 18 18 H 1.48500 * 109.47341 * 329.99969 * 15 13 11 19 19 C 1.47585 * 91.05163 * 24.54988 * 10 9 8 20 20 C 1.50704 * 109.47304 * 119.99714 * 2 1 3 21 21 C 1.38260 * 119.96552 * 240.00441 * 20 2 1 22 22 C 1.38215 * 120.06748 * 179.97438 * 21 20 2 23 23 C 1.38417 * 120.00130 * 359.97438 * 22 21 20 24 24 F 1.35096 * 120.03185 * 180.02562 * 23 22 21 25 25 C 1.38643 * 119.92879 * 0.02562 * 23 22 21 26 26 F 1.35102 * 120.03400 * 179.97438 * 25 23 22 27 27 C 1.38214 * 119.96399 * 59.72453 * 20 2 1 28 28 H 1.08998 * 109.46372 * 54.46623 * 1 2 3 29 29 H 1.08994 * 109.46735 * 174.47103 * 1 2 3 30 30 H 1.09002 * 109.46896 * 294.47001 * 1 2 3 31 31 H 1.09005 * 109.47069 * 93.37723 * 7 6 4 32 32 H 1.09001 * 109.46781 * 213.37368 * 7 6 4 33 33 H 1.08996 * 109.47372 * 333.37499 * 7 6 4 34 34 H 1.08997 * 112.94322 * 343.01080 * 8 6 4 35 35 H 1.09003 * 113.76856 * 336.34698 * 9 8 6 36 36 H 1.08995 * 113.76909 * 107.74658 * 9 8 6 37 37 H 0.96997 * 120.00000 * 179.97438 * 14 13 11 38 38 H 1.08999 * 113.76636 * 221.14720 * 19 10 9 39 39 H 1.09000 * 113.76779 * 89.75197 * 19 10 9 40 40 H 1.07993 * 119.96775 * 359.96873 * 21 20 2 41 41 H 1.08003 * 119.99935 * 179.97438 * 22 21 20 42 42 H 1.08007 * 119.99727 * 359.97438 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.4826 -1.8331 -1.1411 6 7 1.9814 -0.0984 -2.4300 7 6 2.3914 -0.8187 -3.6380 8 6 1.5158 1.2874 -2.5261 9 6 0.7980 1.6098 -3.8493 10 7 1.5531 2.8804 -3.8304 11 6 1.3564 4.1211 -4.3753 12 1 2.0790 4.9058 -4.2065 13 6 0.2281 4.3702 -5.1448 14 7 -0.6527 3.4141 -5.3501 15 14 -0.0398 6.0626 -5.8888 16 1 0.5853 6.1163 -7.2347 17 1 -1.4965 6.3255 -6.0088 18 1 0.5784 7.0914 -5.0143 19 6 2.6024 2.2757 -2.9869 20 6 2.0324 -0.7104 1.2305 21 6 2.8271 -0.0377 2.1401 22 6 3.2886 -0.6869 3.2696 23 6 2.9548 -2.0118 3.4914 24 9 3.4051 -2.6469 4.5955 25 6 2.1578 -2.6863 2.5792 26 9 1.8311 -3.9797 2.7933 27 6 1.6933 -2.0319 1.4515 28 1 -0.3632 0.5973 -0.8363 29 1 -0.3632 -1.0228 -0.0990 30 1 -0.3633 0.4257 0.9354 31 1 1.5186 -1.2806 -4.0995 32 1 2.8471 -0.1206 -4.3402 33 1 3.1137 -1.5909 -3.3730 34 1 0.9715 1.6152 -1.6404 35 1 1.0725 0.9478 -4.6706 36 1 -0.2796 1.7363 -3.7450 37 1 -1.4412 3.5883 -5.8874 38 1 2.9628 2.9329 -2.1955 39 1 3.4080 1.8098 -3.5544 40 1 3.0877 0.9961 1.9679 41 1 3.9097 -0.1605 3.9793 42 1 1.0683 -2.5548 0.7426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044317058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:03 Heat of formation + Delta-G solvation = -37.487221 kcal Electronic energy + Delta-G solvation = -27424.225304 eV Core-core repulsion = 23235.565965 eV Total energy + Delta-G solvation = -4188.659339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.57282 -48.64749 -40.56258 -38.99917 -37.75624 -34.30313 -34.10011 -31.97788 -30.97753 -29.51372 -27.75563 -27.03887 -24.95762 -24.67267 -23.50760 -23.18588 -21.90141 -19.98589 -18.71542 -17.95877 -17.72149 -17.10702 -16.88207 -16.57975 -16.38248 -15.73821 -15.38681 -15.06664 -14.85025 -14.67632 -14.38906 -14.25968 -14.09142 -13.89038 -13.64566 -13.12759 -12.77502 -12.62468 -12.36571 -12.28805 -11.95662 -11.87480 -11.71638 -11.58369 -11.43050 -11.32227 -11.25659 -10.98005 -10.83475 -10.44129 -10.17857 -9.69501 -9.56144 -9.18122 -8.92990 -8.78900 -8.26765 -7.04837 -5.90825 -3.24275 0.71489 0.86789 2.71668 3.03705 3.30639 3.33829 3.38558 3.38707 3.63039 4.17100 4.28394 4.30485 4.38749 4.60011 4.78567 4.93232 5.03015 5.06075 5.11014 5.22685 5.37442 5.44653 5.54331 5.60422 5.62768 5.69987 5.73040 5.75485 5.80475 5.84051 5.95103 6.03905 6.12593 6.23246 6.29020 6.39250 6.57583 6.72704 7.00820 7.07221 7.36958 7.66315 7.82654 8.30654 8.90222 9.56624 10.41355 11.26219 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.002680 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.628329 B =10444.365092 C =10827.907359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 H 0.110 0.890 4 C 0.518 3.482 5 O -0.547 6.547 6 N -0.594 5.594 7 C 0.086 3.914 8 C 0.074 3.926 9 C 0.158 3.842 10 N -0.606 5.606 11 C -0.226 4.226 12 H 0.082 0.918 13 C -0.004 4.004 14 N -0.920 5.920 15 Si 0.914 3.086 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.107 3.893 20 C -0.047 4.047 21 C -0.092 4.092 22 C -0.129 4.129 23 C 0.062 3.938 24 F -0.133 7.133 25 C 0.063 3.937 26 F -0.131 7.131 27 C -0.085 4.085 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.255 0.745 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -7.982 14.434 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 H 0.128 0.872 4 C 0.305 3.695 5 O -0.426 6.426 6 N -0.326 5.326 7 C -0.057 4.057 8 C -0.030 4.030 9 C 0.032 3.968 10 N -0.333 5.333 11 C -0.353 4.353 12 H 0.100 0.900 13 C -0.201 4.201 14 N -0.566 5.566 15 Si 0.744 3.256 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.205 1.205 19 C -0.020 4.020 20 C -0.048 4.048 21 C -0.110 4.110 22 C -0.148 4.148 23 C 0.042 3.958 24 F -0.111 7.111 25 C 0.043 3.957 26 F -0.109 7.109 27 C -0.104 4.104 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.377 -8.394 14.313 17.160 hybrid contribution -0.038 0.585 -0.464 0.747 sum 4.340 -7.809 13.849 16.480 Atomic orbital electron populations 1.21866 0.91128 1.03393 1.03829 1.20317 0.98428 1.00524 0.90181 0.87188 1.20316 0.78359 0.86273 0.84512 1.90679 1.46494 1.19423 1.85955 1.47973 1.63855 1.14215 1.06521 1.21616 1.00334 0.97041 0.86693 1.24287 0.98311 0.78309 1.02123 1.22649 0.98352 0.85803 0.89974 1.45754 1.21040 1.07065 1.59416 1.18986 1.05109 0.85581 1.25665 0.90009 1.24796 0.97161 0.98044 1.00139 1.69792 1.12305 1.31498 1.43029 0.86104 0.77206 0.83144 0.79192 1.21538 1.21535 1.20513 1.22992 0.92709 0.92684 0.93653 1.19323 0.96994 0.93205 0.95281 1.21012 0.96432 1.00694 0.92890 1.20994 1.02088 0.92107 0.99624 1.17708 1.00384 0.92195 0.85505 1.91511 1.87445 1.81961 1.50215 1.17647 1.01367 0.79916 0.96739 1.91520 1.91067 1.33599 1.94758 1.20934 1.00044 0.94630 0.94759 0.90306 0.91801 0.90946 0.92626 0.90852 0.90886 0.86876 0.94666 0.90317 0.93448 0.93385 0.94489 0.84033 0.83689 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.63 37.16 0.32 -1.15 16 2 C -0.07 -0.82 2.04 -92.93 -0.19 -1.01 16 3 H 0.11 1.09 6.81 -51.93 -0.35 0.74 16 4 C 0.52 7.43 6.83 -10.99 -0.08 7.35 16 5 O -0.55 -9.23 14.19 5.55 0.08 -9.15 16 6 N -0.59 -8.77 3.08 -175.74 -0.54 -9.31 16 7 C 0.09 1.22 9.08 59.85 0.54 1.76 16 8 C 0.07 1.19 3.68 -70.14 -0.26 0.93 16 9 C 0.16 3.30 6.90 -2.84 -0.02 3.28 16 10 N -0.61 -14.08 3.70 -177.88 -0.66 -14.74 16 11 C -0.23 -5.89 10.70 -15.06 -0.16 -6.06 16 12 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 13 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 14 N -0.92 -25.56 11.39 55.49 0.63 -24.93 16 15 Si 0.91 20.95 29.55 -169.99 -5.02 15.93 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.11 1.94 8.50 -2.97 -0.03 1.91 16 20 C -0.05 -0.52 4.55 -104.62 -0.48 -1.00 16 21 C -0.09 -0.85 9.67 -39.58 -0.38 -1.23 16 22 C -0.13 -1.21 10.02 -39.52 -0.40 -1.60 16 23 C 0.06 0.72 7.31 -39.37 -0.29 0.43 16 24 F -0.13 -1.63 17.18 2.25 0.04 -1.59 16 25 C 0.06 0.80 7.31 -39.37 -0.29 0.51 16 26 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 27 C -0.08 -1.03 7.87 -39.53 -0.31 -1.34 16 28 H 0.08 0.87 6.40 -51.93 -0.33 0.53 16 29 H 0.06 0.65 7.57 -51.93 -0.39 0.26 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.06 6.57 -51.93 -0.34 0.72 16 33 H 0.07 1.02 7.28 -51.93 -0.38 0.65 16 34 H 0.11 1.65 4.81 -51.93 -0.25 1.40 16 35 H 0.04 0.76 6.51 -51.93 -0.34 0.42 16 36 H 0.08 1.83 7.16 -51.93 -0.37 1.46 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.67 7.31 -51.93 -0.38 0.29 16 40 H 0.14 0.97 7.94 -52.49 -0.42 0.55 16 41 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.15 1.81 7.20 -52.48 -0.38 1.43 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -30.46 350.39 -7.43 -37.89 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.17 Total: -0.22 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.10 Total: 2.58 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.57 Total: -48.98 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.46 -7.43 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044317058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.401 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds