Wall clock time and date at job start Tue Mar 31 2020 15:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47474 * 2 1 4 4 C 1.50694 * 109.47473 * 239.99626 * 2 1 3 5 5 O 1.21285 * 120.00252 * 255.49518 * 4 2 1 6 6 N 1.34774 * 120.00040 * 75.49074 * 4 2 1 7 7 C 1.46504 * 120.00161 * 183.82162 * 6 4 2 8 8 C 1.46504 * 119.99977 * 3.82148 * 6 4 2 9 9 C 1.53947 * 113.74384 * 211.41711 * 8 6 4 10 10 N 1.47812 * 86.03505 * 222.08372 * 9 8 6 11 11 C 1.36936 * 134.45628 * 204.64226 * 10 9 8 12 12 H 1.07996 * 120.00017 * 179.86865 * 11 10 9 13 13 C 1.38816 * 119.99630 * 359.86789 * 11 10 9 14 14 N 1.31616 * 120.00203 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99542 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47162 * 90.00462 * 15 13 11 17 17 H 1.48507 * 109.46838 * 210.00032 * 15 13 11 18 18 H 1.48500 * 109.47341 * 329.99969 * 15 13 11 19 19 C 1.47585 * 91.05163 * 24.54988 * 10 9 8 20 20 C 1.50704 * 109.47304 * 119.99714 * 2 1 3 21 21 C 1.38260 * 119.96552 * 240.00441 * 20 2 1 22 22 C 1.38215 * 120.06748 * 179.97438 * 21 20 2 23 23 C 1.38417 * 120.00130 * 359.97438 * 22 21 20 24 24 F 1.35096 * 120.03185 * 180.02562 * 23 22 21 25 25 C 1.38643 * 119.92879 * 0.02562 * 23 22 21 26 26 F 1.35102 * 120.03400 * 179.97438 * 25 23 22 27 27 C 1.38214 * 119.96399 * 59.72453 * 20 2 1 28 28 H 1.08998 * 109.46372 * 54.46623 * 1 2 3 29 29 H 1.08994 * 109.46735 * 174.47103 * 1 2 3 30 30 H 1.09002 * 109.46896 * 294.47001 * 1 2 3 31 31 H 1.09005 * 109.47069 * 93.37723 * 7 6 4 32 32 H 1.09001 * 109.46781 * 213.37368 * 7 6 4 33 33 H 1.08996 * 109.47372 * 333.37499 * 7 6 4 34 34 H 1.08997 * 112.94322 * 343.01080 * 8 6 4 35 35 H 1.09003 * 113.76856 * 336.34698 * 9 8 6 36 36 H 1.08995 * 113.76909 * 107.74658 * 9 8 6 37 37 H 0.96997 * 120.00000 * 179.97438 * 14 13 11 38 38 H 1.08999 * 113.76636 * 221.14720 * 19 10 9 39 39 H 1.09000 * 113.76779 * 89.75197 * 19 10 9 40 40 H 1.07993 * 119.96775 * 359.96873 * 21 20 2 41 41 H 1.08003 * 119.99935 * 179.97438 * 22 21 20 42 42 H 1.08007 * 119.99727 * 359.97438 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.4826 -1.8331 -1.1411 6 7 1.9814 -0.0984 -2.4300 7 6 2.3914 -0.8187 -3.6380 8 6 1.5158 1.2874 -2.5261 9 6 0.7980 1.6098 -3.8493 10 7 1.5531 2.8804 -3.8304 11 6 1.3564 4.1211 -4.3753 12 1 2.0790 4.9058 -4.2065 13 6 0.2281 4.3702 -5.1448 14 7 -0.6527 3.4141 -5.3501 15 14 -0.0398 6.0626 -5.8888 16 1 0.5853 6.1163 -7.2347 17 1 -1.4965 6.3255 -6.0088 18 1 0.5784 7.0914 -5.0143 19 6 2.6024 2.2757 -2.9869 20 6 2.0324 -0.7104 1.2305 21 6 2.8271 -0.0377 2.1401 22 6 3.2886 -0.6869 3.2696 23 6 2.9548 -2.0118 3.4914 24 9 3.4051 -2.6469 4.5955 25 6 2.1578 -2.6863 2.5792 26 9 1.8311 -3.9797 2.7933 27 6 1.6933 -2.0319 1.4515 28 1 -0.3632 0.5973 -0.8363 29 1 -0.3632 -1.0228 -0.0990 30 1 -0.3633 0.4257 0.9354 31 1 1.5186 -1.2806 -4.0995 32 1 2.8471 -0.1206 -4.3402 33 1 3.1137 -1.5909 -3.3730 34 1 0.9715 1.6152 -1.6404 35 1 1.0725 0.9478 -4.6706 36 1 -0.2796 1.7363 -3.7450 37 1 -1.4412 3.5883 -5.8874 38 1 2.9628 2.9329 -2.1955 39 1 3.4080 1.8098 -3.5544 40 1 3.0877 0.9961 1.9679 41 1 3.9097 -0.1605 3.9793 42 1 1.0683 -2.5548 0.7426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044317058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:02 Heat of formation + Delta-G solvation = -54.069401 kcal Electronic energy + Delta-G solvation = -27424.944361 eV Core-core repulsion = 23235.565965 eV Total energy + Delta-G solvation = -4189.378396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.50443 -49.59006 -41.67881 -40.09203 -39.07798 -35.70568 -35.04434 -33.81605 -31.79695 -30.38314 -29.47633 -28.23678 -26.52044 -25.69747 -24.93423 -24.12877 -22.88856 -21.44459 -19.88902 -18.93235 -18.81449 -18.55696 -17.98664 -17.65594 -17.32861 -17.05879 -16.72784 -16.42509 -16.02446 -15.69813 -15.55628 -15.43758 -15.21169 -14.94136 -14.75105 -14.35635 -13.95628 -13.71469 -13.63565 -13.33004 -13.26877 -13.14616 -12.92896 -12.87633 -12.70046 -12.64367 -12.44207 -12.27014 -12.11578 -12.03417 -11.92255 -11.48227 -10.86273 -10.71527 -10.00925 -9.66185 -9.56619 -8.90568 -7.88869 -5.21902 -0.13655 0.06010 1.50755 1.51104 1.57806 1.59844 1.95406 2.39969 2.53172 2.79053 3.28151 3.30987 3.38399 3.42753 3.59150 3.65681 3.79752 4.00699 4.08996 4.20388 4.21333 4.35104 4.44811 4.46606 4.65957 4.70155 4.82786 4.83897 4.85596 4.89998 4.90514 4.94421 4.95624 5.06239 5.21780 5.28097 5.39835 5.41140 5.51661 5.59527 5.75646 5.93598 6.44119 6.93891 7.14314 7.62962 8.55099 9.27803 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.002680 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.628329 B =10444.365092 C =10827.907359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 H 0.134 0.866 4 C 0.518 3.482 5 O -0.572 6.572 6 N -0.596 5.596 7 C 0.086 3.914 8 C 0.110 3.890 9 C 0.154 3.846 10 N -0.634 5.634 11 C -0.230 4.230 12 H 0.087 0.913 13 C -0.062 4.062 14 N -0.951 5.951 15 Si 0.974 3.026 16 H -0.292 1.292 17 H -0.296 1.296 18 H -0.266 1.266 19 C 0.108 3.892 20 C -0.054 4.054 21 C -0.080 4.080 22 C -0.118 4.118 23 C 0.050 3.950 24 F -0.140 7.140 25 C 0.039 3.961 26 F -0.145 7.145 27 C -0.095 4.095 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.024 0.976 36 H 0.049 0.951 37 H 0.248 0.752 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 -6.251 16.101 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 H 0.152 0.848 4 C 0.307 3.693 5 O -0.452 6.452 6 N -0.327 5.327 7 C -0.056 4.056 8 C 0.006 3.994 9 C 0.028 3.972 10 N -0.361 5.361 11 C -0.358 4.358 12 H 0.105 0.895 13 C -0.255 4.255 14 N -0.599 5.599 15 Si 0.803 3.197 16 H -0.219 1.219 17 H -0.223 1.223 18 H -0.190 1.190 19 C -0.017 4.017 20 C -0.055 4.055 21 C -0.098 4.098 22 C -0.136 4.136 23 C 0.030 3.970 24 F -0.119 7.119 25 C 0.019 3.981 26 F -0.124 7.124 27 C -0.114 4.114 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.194 0.806 41 H 0.194 0.806 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.653 -6.675 16.007 18.241 hybrid contribution -0.356 -0.017 -0.974 1.037 sum 5.296 -6.692 15.033 17.286 Atomic orbital electron populations 1.21868 0.90436 1.03084 1.04637 1.20361 0.98885 1.01147 0.88406 0.84817 1.20875 0.77453 0.85966 0.84985 1.90680 1.47555 1.20678 1.86308 1.47941 1.63945 1.13702 1.07073 1.21593 1.00382 0.96978 0.86662 1.23784 0.96508 0.78718 1.00398 1.22558 0.96948 0.85312 0.92394 1.46072 1.23236 1.06943 1.59895 1.19362 1.04718 0.87047 1.24718 0.89503 1.25544 0.97433 1.01191 1.01370 1.69967 1.12679 1.33152 1.44137 0.85146 0.76455 0.79882 0.78249 1.21909 1.22281 1.19021 1.23152 0.92272 0.93002 0.93323 1.19412 0.97630 0.92759 0.95726 1.21398 0.94599 1.02010 0.91747 1.21363 1.01334 0.90907 0.99998 1.17987 1.00623 0.93180 0.85218 1.91490 1.87539 1.82325 1.50533 1.17894 1.02738 0.79692 0.97733 1.91473 1.91380 1.34613 1.94922 1.20906 1.00454 0.95425 0.94566 0.91134 0.92478 0.88731 0.92679 0.91228 0.90622 0.84607 0.95786 0.93266 0.94272 0.90993 0.94083 0.80551 0.80564 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.63 71.98 0.62 -1.95 16 2 C -0.07 -1.30 2.04 -12.29 -0.03 -1.32 16 3 H 0.13 1.99 6.81 -2.39 -0.02 1.97 16 4 C 0.52 13.89 6.83 87.66 0.60 14.48 16 5 O -0.57 -18.75 14.19 -3.05 -0.04 -18.80 16 6 N -0.60 -16.63 3.08 -828.31 -2.55 -19.18 16 7 C 0.09 2.42 9.08 127.77 1.16 3.58 16 8 C 0.11 3.33 3.68 46.75 0.17 3.50 16 9 C 0.15 6.42 6.90 86.44 0.60 7.02 16 10 N -0.63 -28.89 3.70 -716.70 -2.65 -31.54 16 11 C -0.23 -11.82 10.70 84.03 0.90 -10.92 16 12 H 0.09 4.25 7.83 -2.91 -0.02 4.22 16 13 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 14 N -0.95 -53.77 11.39 21.65 0.25 -53.52 16 15 Si 0.97 43.01 29.55 68.60 2.03 45.04 16 16 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 17 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 19 C 0.11 3.66 8.50 86.48 0.73 4.40 16 20 C -0.05 -1.06 4.55 -19.86 -0.09 -1.15 16 21 C -0.08 -1.14 9.67 22.27 0.22 -0.92 16 22 C -0.12 -1.77 10.02 22.31 0.22 -1.55 16 23 C 0.05 1.08 7.31 22.41 0.16 1.25 16 24 F -0.14 -3.30 17.18 44.97 0.77 -2.52 16 25 C 0.04 0.98 7.31 22.41 0.16 1.15 16 26 F -0.15 -4.06 17.18 44.97 0.77 -3.29 16 27 C -0.09 -2.23 7.87 22.31 0.18 -2.06 16 28 H 0.07 1.40 6.40 -2.39 -0.02 1.39 16 29 H 0.06 1.10 7.57 -2.39 -0.02 1.09 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 1.98 6.57 -2.39 -0.02 1.97 16 33 H 0.08 2.08 7.28 -2.39 -0.02 2.06 16 34 H 0.14 3.54 4.81 -2.39 -0.01 3.53 16 35 H 0.02 1.05 6.51 -2.39 -0.02 1.04 16 36 H 0.05 2.34 7.16 -2.39 -0.02 2.32 16 37 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.04 1.39 7.31 -2.39 -0.02 1.37 16 40 H 0.18 1.32 7.94 -2.91 -0.02 1.29 16 41 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.13 3.40 7.20 -2.91 -0.02 3.38 16 Total: -1.00 -66.83 350.39 5.70 -61.13 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.06 Total: 10.02 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.08 Total: 12.66 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.96 Total: -104.24 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.04 Total: -18.80 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 1.55 Total: -5.81 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.83 5.70 -61.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044317058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.065 kcal (2) G-P(sol) polarization free energy of solvation -66.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds