Wall clock time and date at job start Tue Mar 31 2020 14:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.58352 * 2 1 4 4 C 1.53197 * 109.58378 * 120.28072 * 2 1 3 5 5 C 1.53045 * 109.31001 * 174.56548 * 4 2 1 6 6 H 1.08996 * 109.45857 * 58.64406 * 5 4 2 7 7 N 1.46501 * 109.45389 * 178.61465 * 5 4 2 8 8 C 1.36940 * 119.99560 * 205.02413 * 7 5 4 9 9 H 1.08000 * 120.00045 * 359.73347 * 8 7 5 10 10 C 1.38809 * 119.99888 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99732 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00010 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47308 * 89.99813 * 12 10 8 14 14 H 1.48502 * 109.47025 * 209.99651 * 12 10 8 15 15 H 1.48500 * 109.47271 * 329.99378 * 12 10 8 16 16 C 1.53032 * 109.52511 * 298.62929 * 5 4 2 17 17 C 1.53190 * 109.31504 * 61.38736 * 16 5 4 18 18 N 1.46920 * 109.70561 * 239.64389 * 2 1 3 19 19 C 1.34778 * 120.63145 * 6.55211 * 18 2 1 20 20 O 1.21566 * 119.99846 * 6.25433 * 19 18 2 21 21 C 1.47730 * 120.00156 * 186.24831 * 19 18 2 22 22 C 1.39650 * 120.10842 * 213.78886 * 21 19 18 23 23 C 1.37856 * 119.92546 * 179.97438 * 22 21 19 24 24 C 1.38614 * 120.14368 * 359.97438 * 23 22 21 25 25 F 1.35093 * 119.88396 * 180.02562 * 24 23 22 26 26 C 1.38830 * 120.22241 * 0.02562 * 24 23 22 27 27 F 1.35096 * 119.96591 * 179.97438 * 26 24 23 28 28 C 1.38068 * 120.07229 * 359.74155 * 26 24 23 29 29 H 1.08996 * 109.47275 * 292.56226 * 1 2 3 30 30 H 1.08999 * 109.46694 * 52.56265 * 1 2 3 31 31 H 1.09001 * 109.46919 * 172.55658 * 1 2 3 32 32 H 1.08999 * 109.49716 * 54.61378 * 4 2 1 33 33 H 1.08999 * 109.49944 * 294.52019 * 4 2 1 34 34 H 0.96996 * 120.00653 * 25.02822 * 7 5 4 35 35 H 0.97004 * 119.99962 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.49311 * 181.32646 * 16 5 4 37 37 H 1.09003 * 109.49817 * 301.41913 * 16 5 4 38 38 H 1.09007 * 109.58586 * 185.55852 * 17 16 5 39 39 H 1.09001 * 109.71464 * 65.19972 * 17 16 5 40 40 H 1.07994 * 120.03924 * 359.95047 * 22 21 19 41 41 H 1.07991 * 119.92729 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.07171 * 180.25721 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8433 1.1730 6 1 4.0045 0.1528 1.1021 7 7 4.0653 -1.5095 2.3792 8 6 5.3487 -1.2893 2.8030 9 1 5.9955 -0.6279 2.2457 10 6 5.8200 -1.9201 3.9462 11 7 7.0537 -1.7088 4.3532 12 14 4.7037 -3.0699 4.9060 13 1 4.8499 -4.4523 4.3835 14 1 5.0806 -3.0412 6.3421 15 1 3.2933 -2.6304 4.7556 16 6 3.9600 -1.6609 -0.0597 17 6 3.4686 -0.9436 -1.3209 18 7 2.0254 -0.6990 -1.1935 19 6 1.1723 -1.1079 -2.1535 20 8 -0.0025 -0.8010 -2.0935 21 6 1.6648 -1.9288 -3.2786 22 6 1.0990 -1.7894 -4.5478 23 6 1.5619 -2.5570 -5.5951 24 6 2.5880 -3.4664 -5.3914 25 9 3.0378 -4.2156 -6.4216 26 6 3.1548 -3.6099 -4.1322 27 9 4.1542 -4.4982 -3.9394 28 6 2.7015 -2.8423 -3.0779 29 1 -0.3633 0.3943 0.9490 30 1 -0.3633 0.6247 -0.8160 31 1 -0.3633 -1.0190 -0.1331 32 1 1.6049 -1.7246 1.2922 33 1 1.7637 -0.1654 2.1372 34 1 3.4857 -2.1066 2.8776 35 1 7.3832 -2.1499 5.1519 36 1 5.0446 -1.7629 -0.0986 37 1 3.5032 -2.6489 -0.0014 38 1 3.6577 -1.5684 -2.1938 39 1 3.9918 0.0062 -1.4311 40 1 0.2996 -1.0814 -4.7085 41 1 1.1241 -2.4495 -6.5765 42 1 3.1453 -2.9510 -2.0993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044630129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:03 Heat of formation + Delta-G solvation = -52.841667 kcal Electronic energy + Delta-G solvation = -27859.879219 eV Core-core repulsion = 23670.554061 eV Total energy + Delta-G solvation = -4189.325158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.82166 -48.88461 -41.07166 -38.82044 -37.55552 -34.82366 -33.42495 -32.04526 -31.20053 -30.71614 -29.83176 -27.35211 -24.87783 -23.93588 -23.84899 -22.72152 -21.75843 -20.44194 -19.61375 -18.26698 -17.91865 -17.52369 -17.45872 -16.70735 -16.39861 -16.15327 -15.34969 -15.26692 -15.05382 -14.75394 -14.66061 -14.36344 -14.20848 -13.74452 -13.61061 -13.43510 -13.02679 -12.85033 -12.63442 -12.50137 -12.31897 -12.14601 -11.97268 -11.76332 -11.44764 -11.08806 -11.00034 -10.94555 -10.61393 -10.36187 -10.00521 -9.66120 -9.51165 -9.30049 -9.14267 -8.98318 -8.61737 -7.35986 -5.83666 -3.20194 0.16651 0.52489 2.33506 2.77534 3.10314 3.32970 3.34075 3.36084 3.41588 3.89975 4.02931 4.19302 4.48224 4.53253 4.58468 4.84877 4.88600 5.03242 5.11443 5.19847 5.28496 5.32089 5.36469 5.42543 5.48316 5.51304 5.64991 5.67143 5.72312 5.81786 5.93515 5.97353 6.15199 6.20440 6.23970 6.28140 6.33158 6.55805 6.69433 6.83432 7.29434 7.91214 7.98465 8.35225 9.13040 9.85770 10.04928 11.34389 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.003646 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.787970 B = 7677.729392 C = 9118.377406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.155 4.155 17 C 0.078 3.922 18 N -0.594 5.594 19 C 0.560 3.440 20 O -0.527 6.527 21 C -0.110 4.110 22 C -0.046 4.046 23 C -0.133 4.133 24 C 0.087 3.913 25 F -0.125 7.125 26 C 0.064 3.936 27 F -0.122 7.122 28 C -0.105 4.105 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 0.594 -19.769 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.075 3.925 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.579 5.579 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.196 4.196 17 C -0.044 4.044 18 N -0.326 5.326 19 C 0.348 3.652 20 O -0.406 6.406 21 C -0.114 4.114 22 C -0.065 4.065 23 C -0.152 4.152 24 C 0.066 3.934 25 F -0.103 7.103 26 C 0.044 3.956 27 F -0.100 7.100 28 C -0.123 4.123 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.901 0.796 -19.675 23.541 hybrid contribution -0.106 -1.358 0.668 1.517 sum -13.007 -0.562 -19.007 23.039 Atomic orbital electron populations 1.22189 0.92699 1.03648 1.00925 1.21337 0.95479 0.95372 0.83247 0.90580 1.22363 0.97541 1.01064 0.96902 1.20118 0.90743 0.95427 0.86251 0.92385 1.42787 1.13253 1.55007 1.27856 1.19054 0.87498 1.23721 1.07411 0.89141 1.24670 0.96067 1.00033 0.98142 1.69700 1.15129 1.47018 1.26086 0.86571 0.80500 0.81589 0.79970 1.21090 1.21708 1.20315 1.22697 1.02518 0.99711 0.94647 1.22587 0.79338 1.01967 1.00543 1.48132 1.07627 1.56856 1.19970 1.18025 0.85771 0.79717 0.81698 1.90847 1.16621 1.56827 1.76267 1.19991 0.97231 0.98786 0.95370 1.21139 0.97891 0.97496 0.90018 1.21058 0.96531 0.96073 1.01491 1.17948 0.97224 0.94665 0.83539 1.91552 1.88044 1.74230 1.56493 1.17526 0.91225 0.93672 0.93224 1.91585 1.57481 1.65381 1.95574 1.21740 0.95920 0.94694 0.99987 0.93436 0.90733 0.91679 0.91805 0.90272 0.80600 0.92988 0.89731 0.92187 0.88558 0.90738 0.83151 0.82952 0.81434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 7.62 37.16 0.28 -1.42 16 2 C 0.15 1.87 3.48 -67.60 -0.24 1.63 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.02 4.84 -26.61 -0.13 -2.15 16 5 C 0.18 3.17 2.73 -67.89 -0.19 2.98 16 6 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 7 N -0.75 -16.53 4.92 -53.39 -0.26 -16.79 16 8 C -0.25 -6.62 10.41 -15.06 -0.16 -6.77 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 12 Si 0.88 21.57 27.74 -169.99 -4.71 16.85 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 16 C -0.15 -2.28 5.32 -26.62 -0.14 -2.43 16 17 C 0.08 0.90 5.53 -3.71 -0.02 0.88 16 18 N -0.59 -7.20 2.97 -166.37 -0.49 -7.70 16 19 C 0.56 6.87 7.20 -12.38 -0.09 6.79 16 20 O -0.53 -7.47 12.39 5.31 0.07 -7.41 16 21 C -0.11 -1.13 5.45 -104.97 -0.57 -1.70 16 22 C -0.05 -0.38 9.60 -39.19 -0.38 -0.76 16 23 C -0.13 -0.98 10.01 -39.58 -0.40 -1.38 16 24 C 0.09 0.83 7.31 -39.22 -0.29 0.54 16 25 F -0.12 -1.29 17.17 2.25 0.04 -1.25 16 26 C 0.06 0.67 7.30 -39.42 -0.29 0.39 16 27 F -0.12 -1.47 17.18 2.25 0.04 -1.43 16 28 C -0.10 -1.06 7.37 -39.13 -0.29 -1.35 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.97 6.68 -51.93 -0.35 0.62 16 31 H 0.06 0.90 6.83 -51.93 -0.35 0.54 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.89 7.62 -51.93 -0.40 0.50 16 38 H 0.10 0.97 3.52 -51.93 -0.18 0.79 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.15 1.06 7.98 -52.49 -0.42 0.64 16 41 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.17 1.73 5.00 -52.49 -0.26 1.47 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -30.95 341.37 -7.55 -38.50 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.16 Total: 6.51 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.98 Total: -4.66 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.02 Total: -52.24 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.07 Total: -7.41 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.08 Total: -2.69 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.95 -7.55 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044630129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.346 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds