Wall clock time and date at job start Tue Mar 31 2020 14:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.58352 * 2 1 4 4 C 1.53197 * 109.58378 * 120.28072 * 2 1 3 5 5 C 1.53045 * 109.31001 * 174.56548 * 4 2 1 6 6 H 1.08996 * 109.45857 * 58.64406 * 5 4 2 7 7 N 1.46501 * 109.45389 * 178.61465 * 5 4 2 8 8 C 1.36940 * 119.99560 * 205.02413 * 7 5 4 9 9 H 1.08000 * 120.00045 * 359.73347 * 8 7 5 10 10 C 1.38809 * 119.99888 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99732 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 120.00010 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47308 * 89.99813 * 12 10 8 14 14 H 1.48502 * 109.47025 * 209.99651 * 12 10 8 15 15 H 1.48500 * 109.47271 * 329.99378 * 12 10 8 16 16 C 1.53032 * 109.52511 * 298.62929 * 5 4 2 17 17 C 1.53190 * 109.31504 * 61.38736 * 16 5 4 18 18 N 1.46920 * 109.70561 * 239.64389 * 2 1 3 19 19 C 1.34778 * 120.63145 * 6.55211 * 18 2 1 20 20 O 1.21566 * 119.99846 * 6.25433 * 19 18 2 21 21 C 1.47730 * 120.00156 * 186.24831 * 19 18 2 22 22 C 1.39650 * 120.10842 * 213.78886 * 21 19 18 23 23 C 1.37856 * 119.92546 * 179.97438 * 22 21 19 24 24 C 1.38614 * 120.14368 * 359.97438 * 23 22 21 25 25 F 1.35093 * 119.88396 * 180.02562 * 24 23 22 26 26 C 1.38830 * 120.22241 * 0.02562 * 24 23 22 27 27 F 1.35096 * 119.96591 * 179.97438 * 26 24 23 28 28 C 1.38068 * 120.07229 * 359.74155 * 26 24 23 29 29 H 1.08996 * 109.47275 * 292.56226 * 1 2 3 30 30 H 1.08999 * 109.46694 * 52.56265 * 1 2 3 31 31 H 1.09001 * 109.46919 * 172.55658 * 1 2 3 32 32 H 1.08999 * 109.49716 * 54.61378 * 4 2 1 33 33 H 1.08999 * 109.49944 * 294.52019 * 4 2 1 34 34 H 0.96996 * 120.00653 * 25.02822 * 7 5 4 35 35 H 0.97004 * 119.99962 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.49311 * 181.32646 * 16 5 4 37 37 H 1.09003 * 109.49817 * 301.41913 * 16 5 4 38 38 H 1.09007 * 109.58586 * 185.55852 * 17 16 5 39 39 H 1.09001 * 109.71464 * 65.19972 * 17 16 5 40 40 H 1.07994 * 120.03924 * 359.95047 * 22 21 19 41 41 H 1.07991 * 119.92729 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.07171 * 180.25721 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5678 -0.8433 1.1730 6 1 4.0045 0.1528 1.1021 7 7 4.0653 -1.5095 2.3792 8 6 5.3487 -1.2893 2.8030 9 1 5.9955 -0.6279 2.2457 10 6 5.8200 -1.9201 3.9462 11 7 7.0537 -1.7088 4.3532 12 14 4.7037 -3.0699 4.9060 13 1 4.8499 -4.4523 4.3835 14 1 5.0806 -3.0412 6.3421 15 1 3.2933 -2.6304 4.7556 16 6 3.9600 -1.6609 -0.0597 17 6 3.4686 -0.9436 -1.3209 18 7 2.0254 -0.6990 -1.1935 19 6 1.1723 -1.1079 -2.1535 20 8 -0.0025 -0.8010 -2.0935 21 6 1.6648 -1.9288 -3.2786 22 6 1.0990 -1.7894 -4.5478 23 6 1.5619 -2.5570 -5.5951 24 6 2.5880 -3.4664 -5.3914 25 9 3.0378 -4.2156 -6.4216 26 6 3.1548 -3.6099 -4.1322 27 9 4.1542 -4.4982 -3.9394 28 6 2.7015 -2.8423 -3.0779 29 1 -0.3633 0.3943 0.9490 30 1 -0.3633 0.6247 -0.8160 31 1 -0.3633 -1.0190 -0.1331 32 1 1.6049 -1.7246 1.2922 33 1 1.7637 -0.1654 2.1372 34 1 3.4857 -2.1066 2.8776 35 1 7.3832 -2.1499 5.1519 36 1 5.0446 -1.7629 -0.0986 37 1 3.5032 -2.6489 -0.0014 38 1 3.6577 -1.5684 -2.1938 39 1 3.9918 0.0062 -1.4311 40 1 0.2996 -1.0814 -4.7085 41 1 1.1241 -2.4495 -6.5765 42 1 3.1453 -2.9510 -2.0993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044630129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:02 Heat of formation + Delta-G solvation = -70.908430 kcal Electronic energy + Delta-G solvation = -27860.662652 eV Core-core repulsion = 23670.554061 eV Total energy + Delta-G solvation = -4190.108591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.62629 -49.70382 -42.02758 -39.68415 -38.70915 -36.36065 -34.45551 -33.82893 -31.96702 -31.76998 -31.23696 -28.52968 -26.09650 -25.16255 -24.67567 -24.05687 -22.77901 -21.77304 -20.72346 -19.59789 -19.04156 -18.64191 -18.27737 -17.52839 -17.28508 -17.13811 -16.75936 -16.21894 -16.11106 -15.87211 -15.82341 -15.51399 -15.33200 -14.91511 -14.84691 -14.52163 -14.35513 -13.97959 -13.83285 -13.60757 -13.47095 -13.10773 -13.05246 -12.96137 -12.76478 -12.60653 -12.39449 -12.09169 -12.03559 -11.92054 -11.78381 -11.39599 -10.95907 -10.36113 -10.15078 -9.94585 -9.63234 -9.31160 -8.01407 -5.34518 -0.59348 -0.18693 1.38253 1.40242 1.47427 1.48307 1.82879 2.31251 2.48755 2.60364 3.10096 3.24254 3.30413 3.44062 3.49604 3.74418 3.81519 3.86764 3.97894 4.04394 4.21029 4.30662 4.43277 4.50726 4.52889 4.57672 4.59337 4.71228 4.73989 4.83556 4.85741 4.93411 5.00834 5.04431 5.15390 5.26434 5.38950 5.44739 5.51983 5.65996 5.78915 6.22743 6.32037 7.02248 7.08933 7.85381 8.03248 9.19986 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.003646 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.787970 B = 7677.729392 C = 9118.377406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.151 3.849 3 H 0.087 0.913 4 C -0.129 4.129 5 C 0.177 3.823 6 H 0.050 0.950 7 N -0.752 5.752 8 C -0.224 4.224 9 H 0.061 0.939 10 C -0.063 4.063 11 N -0.984 5.984 12 Si 0.950 3.050 13 H -0.282 1.282 14 H -0.299 1.299 15 H -0.252 1.252 16 C -0.146 4.146 17 C 0.088 3.912 18 N -0.595 5.595 19 C 0.562 3.438 20 O -0.546 6.546 21 C -0.119 4.119 22 C -0.036 4.036 23 C -0.113 4.113 24 C 0.082 3.918 25 F -0.131 7.131 26 C 0.048 3.952 27 F -0.136 7.136 28 C -0.105 4.105 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.363 0.637 35 H 0.256 0.744 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.169 0.831 41 H 0.187 0.813 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 0.683 -21.602 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.105 0.895 4 C -0.168 4.168 5 C 0.069 3.931 6 H 0.068 0.932 7 N -0.394 5.394 8 C -0.355 4.355 9 H 0.079 0.921 10 C -0.254 4.254 11 N -0.635 5.635 12 Si 0.778 3.222 13 H -0.209 1.209 14 H -0.226 1.226 15 H -0.176 1.176 16 C -0.187 4.187 17 C -0.034 4.034 18 N -0.327 5.327 19 C 0.351 3.649 20 O -0.425 6.425 21 C -0.123 4.123 22 C -0.055 4.055 23 C -0.131 4.131 24 C 0.062 3.938 25 F -0.109 7.109 26 C 0.028 3.972 27 F -0.115 7.115 28 C -0.124 4.124 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.196 0.804 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.186 0.814 41 H 0.204 0.796 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.467 0.896 -21.562 26.551 hybrid contribution 0.660 -1.320 1.107 1.845 sum -14.807 -0.424 -20.455 25.255 Atomic orbital electron populations 1.22057 0.92154 1.02710 1.01445 1.21307 0.95740 0.95622 0.82521 0.89504 1.22232 0.95024 1.01348 0.98169 1.20375 0.92642 0.94839 0.85260 0.93209 1.42826 1.11604 1.55472 1.29516 1.19027 0.88818 1.21479 1.06223 0.92073 1.25433 0.97552 1.02602 0.99819 1.69875 1.17445 1.49191 1.26956 0.85487 0.79778 0.79305 0.77658 1.20860 1.22587 1.17645 1.22480 1.01337 0.99685 0.95161 1.22508 0.79124 1.02425 0.99345 1.48139 1.07716 1.56858 1.19996 1.18248 0.85409 0.79382 0.81899 1.90843 1.17305 1.57584 1.76803 1.19895 0.97790 0.98959 0.95607 1.21369 0.97613 0.97340 0.89181 1.21363 0.94950 0.94129 1.02680 1.18156 0.97676 0.95029 0.82943 1.91541 1.88230 1.74518 1.56622 1.17689 0.91500 0.94036 0.93998 1.91546 1.58219 1.65984 1.95727 1.21596 0.96162 0.94987 0.99671 0.92243 0.91056 0.93086 0.91970 0.90148 0.80356 0.93477 0.91677 0.92228 0.86734 0.89698 0.81397 0.79588 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 7.62 71.98 0.55 -2.33 16 2 C 0.15 3.50 3.48 44.98 0.16 3.65 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.13 -3.52 4.84 30.67 0.15 -3.37 16 5 C 0.18 5.95 2.73 45.02 0.12 6.07 16 6 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 7 N -0.75 -32.90 4.92 -322.82 -1.59 -34.49 16 8 C -0.22 -12.21 10.41 84.03 0.87 -11.34 16 9 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 10 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 11 N -0.98 -62.08 13.97 21.65 0.30 -61.77 16 12 Si 0.95 44.77 27.74 68.60 1.90 46.67 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.25 -10.67 6.52 99.48 0.65 -10.02 16 16 C -0.15 -4.23 5.32 30.67 0.16 -4.06 16 17 C 0.09 1.90 5.53 86.36 0.48 2.37 16 18 N -0.60 -13.28 2.97 -798.53 -2.37 -15.66 16 19 C 0.56 12.55 7.20 86.75 0.62 13.18 16 20 O -0.55 -14.25 12.39 -3.92 -0.05 -14.30 16 21 C -0.12 -2.16 5.45 -20.09 -0.11 -2.26 16 22 C -0.04 -0.48 9.60 22.52 0.22 -0.26 16 23 C -0.11 -1.26 10.01 22.27 0.22 -1.04 16 24 C 0.08 1.38 7.31 22.50 0.16 1.55 16 25 F -0.13 -2.47 17.17 44.97 0.77 -1.69 16 26 C 0.05 0.95 7.30 22.37 0.16 1.11 16 27 F -0.14 -3.25 17.18 44.97 0.77 -2.48 16 28 C -0.11 -1.99 7.37 22.57 0.17 -1.82 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.69 6.68 -2.39 -0.02 1.68 16 31 H 0.05 1.31 6.83 -2.39 -0.02 1.29 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.36 15.55 5.66 -92.71 -0.52 15.02 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.06 1.73 7.62 -2.39 -0.02 1.71 16 38 H 0.12 2.13 3.52 -2.39 -0.01 2.12 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.17 1.68 7.98 -2.91 -0.02 1.66 16 41 H 0.19 0.84 8.06 -2.92 -0.02 0.82 16 42 H 0.16 3.19 5.00 -2.91 -0.01 3.17 16 Total: -1.00 -67.89 341.37 4.63 -63.25 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.49 Total: 22.14 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 4.41 Total: -1.68 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -3.66 Total: -111.92 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.05 Total: -14.30 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 1.54 Total: -4.17 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -67.89 4.63 -63.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044630129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.654 kcal (2) G-P(sol) polarization free energy of solvation -67.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds