Wall clock time and date at job start Tue Mar 31 2020 14:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58617 * 2 1 4 4 C 1.53186 * 109.58487 * 239.71948 * 2 1 3 5 5 C 1.53042 * 109.34193 * 185.41965 * 4 2 1 6 6 H 1.09008 * 109.45794 * 301.36471 * 5 4 2 7 7 N 1.46498 * 109.46349 * 181.40075 * 5 4 2 8 8 C 1.36939 * 119.99886 * 155.00197 * 7 5 4 9 9 H 1.07998 * 120.00146 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99849 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00099 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00148 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46778 * 59.99498 * 12 10 8 14 14 H 1.48493 * 109.47449 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47259 * 300.00108 * 12 10 8 16 16 C 1.53111 * 109.50233 * 61.34339 * 5 4 2 17 17 C 1.53188 * 109.33253 * 298.66297 * 16 5 4 18 18 N 1.46919 * 109.70385 * 120.35736 * 2 1 3 19 19 C 1.34781 * 120.63202 * 353.48794 * 18 2 1 20 20 O 1.21571 * 119.99806 * 5.23895 * 19 18 2 21 21 C 1.47698 * 119.99925 * 185.23875 * 19 18 2 22 22 C 1.39679 * 120.15725 * 30.22612 * 21 19 18 23 23 C 1.37846 * 119.92396 * 179.78829 * 22 21 19 24 24 C 1.38446 * 120.24195 * 0.49043 * 23 22 21 25 25 C 1.38387 * 120.31511 * 359.73877 * 24 23 22 26 26 F 1.35096 * 119.96453 * 180.02562 * 25 24 23 27 27 C 1.38548 * 120.06819 * 0.02703 * 25 24 23 28 28 F 1.35100 * 120.11939 * 179.97438 * 27 25 24 29 29 H 1.08996 * 109.47368 * 183.74366 * 1 2 3 30 30 H 1.09001 * 109.47070 * 303.74876 * 1 2 3 31 31 H 1.08996 * 109.46824 * 63.74471 * 1 2 3 32 32 H 1.09004 * 109.49957 * 305.38622 * 4 2 1 33 33 H 1.09003 * 109.50202 * 65.44927 * 4 2 1 34 34 H 0.96999 * 119.99869 * 335.00169 * 7 5 4 35 35 H 0.97006 * 119.99753 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.49053 * 178.70271 * 16 5 4 37 37 H 1.09000 * 109.48173 * 58.62031 * 16 5 4 38 38 H 1.09004 * 109.58556 * 294.84810 * 17 16 5 39 39 H 1.09003 * 109.70268 * 174.48941 * 17 16 5 40 40 H 1.07998 * 120.03557 * 359.97438 * 22 21 19 41 41 H 1.08001 * 119.87829 * 180.20988 * 23 22 21 42 42 H 1.08004 * 119.84710 * 179.72308 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2463 5 6 3.5678 -0.8433 -1.1738 6 1 4.0046 0.1529 -1.1030 7 7 4.0648 -1.5092 -2.3804 8 6 5.3482 -1.2893 -2.8044 9 1 5.9938 -0.6247 -2.2497 10 6 5.8189 -1.9199 -3.9479 11 7 5.0319 -2.7295 -4.6243 12 14 7.5694 -1.6194 -4.5269 13 1 8.5204 -2.0412 -3.4672 14 1 7.8242 -2.4047 -5.7612 15 1 7.7552 -0.1739 -4.8120 16 6 3.9604 -1.6608 0.0598 17 6 3.4686 -0.9437 1.3210 18 7 2.0254 -0.6990 1.1935 19 6 1.1721 -1.1086 2.1531 20 8 -0.0268 -0.9865 1.9929 21 6 1.6937 -1.7058 3.3992 22 6 2.9392 -1.3154 3.8967 23 6 3.4194 -1.8727 5.0625 24 6 2.6761 -2.8260 5.7375 25 6 1.4431 -3.2235 5.2510 26 9 0.7236 -4.1539 5.9156 27 6 0.9458 -2.6684 4.0830 28 9 -0.2576 -3.0561 3.6069 29 1 -0.3634 -1.0254 0.0671 30 1 -0.3633 0.5709 0.8545 31 1 -0.3633 0.4546 -0.9216 32 1 1.6049 -1.7246 -1.2922 33 1 1.7633 -0.1657 -2.1372 34 1 3.4848 -2.1059 -2.8788 35 1 5.3610 -3.1705 -5.4232 36 1 5.0449 -1.7626 0.0987 37 1 3.5037 -2.6488 0.0016 38 1 3.9920 0.0064 1.4287 39 1 3.6578 -1.5664 2.1953 40 1 3.5239 -0.5757 3.3702 41 1 4.3810 -1.5678 5.4483 42 1 3.0605 -3.2617 6.6479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044725708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:27 Heat of formation + Delta-G solvation = -73.391115 kcal Electronic energy + Delta-G solvation = -27923.562464 eV Core-core repulsion = 23733.346215 eV Total energy + Delta-G solvation = -4190.216249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.59272 -49.67635 -41.93541 -39.63812 -38.68196 -36.22976 -34.46074 -33.69402 -31.92683 -31.42017 -30.90799 -28.47294 -26.18485 -25.48231 -24.67242 -23.77029 -22.88510 -21.66039 -20.72712 -19.18680 -18.83461 -18.66291 -18.19693 -17.52747 -17.08157 -16.90125 -16.72607 -16.44840 -16.05460 -15.99953 -15.54097 -15.47576 -15.34856 -15.18218 -14.66493 -14.63127 -14.05959 -13.97031 -13.61744 -13.40208 -13.20971 -13.08895 -13.01970 -12.80801 -12.70334 -12.61701 -12.31860 -12.20406 -12.04008 -11.92051 -11.64901 -11.35655 -10.85658 -10.35165 -10.12877 -9.82176 -9.64224 -8.98571 -7.90648 -5.19879 -0.49531 -0.18377 1.50467 1.53059 1.53313 1.59167 1.79609 2.38771 2.59238 2.67534 3.13589 3.30742 3.42914 3.59614 3.72300 3.74389 3.86204 3.98296 4.04170 4.12561 4.23574 4.32592 4.43839 4.56862 4.60942 4.67421 4.70733 4.75789 4.82098 4.85409 4.99245 5.01443 5.06460 5.10301 5.12677 5.24223 5.41404 5.51581 5.56217 5.61483 5.67450 6.29528 6.31559 7.01524 7.36196 8.11991 8.34828 9.33036 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.003194 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.259332 B = 8763.274198 C = 9573.361627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.154 3.846 3 H 0.100 0.900 4 C -0.126 4.126 5 C 0.173 3.827 6 H 0.058 0.942 7 N -0.740 5.740 8 C -0.234 4.234 9 H 0.084 0.916 10 C -0.080 4.080 11 N -0.975 5.975 12 Si 0.972 3.028 13 H -0.274 1.274 14 H -0.303 1.303 15 H -0.277 1.277 16 C -0.143 4.143 17 C 0.090 3.910 18 N -0.592 5.592 19 C 0.551 3.449 20 O -0.557 6.557 21 C -0.158 4.158 22 C -0.072 4.072 23 C -0.086 4.086 24 C -0.087 4.087 25 C 0.042 3.958 26 F -0.138 7.138 27 C 0.083 3.917 28 F -0.138 7.138 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.368 0.632 35 H 0.248 0.752 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.184 0.816 41 H 0.197 0.803 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 5.494 24.349 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.118 0.882 4 C -0.165 4.165 5 C 0.065 3.935 6 H 0.076 0.924 7 N -0.378 5.378 8 C -0.366 4.366 9 H 0.102 0.898 10 C -0.271 4.271 11 N -0.626 5.626 12 Si 0.801 3.199 13 H -0.200 1.200 14 H -0.230 1.230 15 H -0.203 1.203 16 C -0.184 4.184 17 C -0.031 4.031 18 N -0.324 5.324 19 C 0.340 3.660 20 O -0.437 6.437 21 C -0.163 4.163 22 C -0.090 4.090 23 C -0.103 4.103 24 C -0.106 4.106 25 C 0.022 3.978 26 F -0.117 7.117 27 C 0.062 3.938 28 F -0.117 7.117 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.199 0.801 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.201 0.799 41 H 0.214 0.786 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.732 5.603 24.222 24.922 hybrid contribution -0.330 -1.066 -1.310 1.720 sum -2.062 4.537 22.912 23.448 Atomic orbital electron populations 1.22056 0.93159 1.02100 1.00982 1.21317 0.95119 0.95822 0.82659 0.88232 1.22177 0.96312 1.00167 0.97820 1.20458 0.91813 0.95151 0.86108 0.92402 1.42689 1.12322 1.54530 1.28305 1.19639 0.90097 1.20985 1.05880 0.89785 1.25577 1.02063 1.00523 0.98983 1.69836 1.37381 1.35365 1.19992 0.85229 0.80211 0.77401 0.77033 1.20035 1.22963 1.20289 1.22501 1.01456 0.98919 0.95482 1.22775 0.78318 1.02712 0.99309 1.48108 1.08332 1.56456 1.19466 1.18349 0.85888 0.78198 0.83567 1.90873 1.16450 1.56468 1.79899 1.20005 0.98102 1.00537 0.97611 1.22131 0.91427 0.99458 0.96001 1.21647 1.01787 0.94127 0.92757 1.21782 0.90032 0.96930 1.01854 1.17892 0.94164 0.93643 0.92139 1.91515 1.77777 1.63100 1.79281 1.18106 0.82699 0.98408 0.94602 1.91523 1.42559 1.89662 1.87933 0.93782 0.91714 0.92467 0.93963 0.90986 0.80113 0.94294 0.90663 0.94577 0.87283 0.86167 0.79947 0.78577 0.79784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 7.60 71.98 0.55 -3.09 16 2 C 0.15 4.12 3.49 44.98 0.16 4.28 16 3 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.13 -4.10 4.84 30.67 0.15 -3.96 16 5 C 0.17 6.18 2.74 45.04 0.12 6.30 16 6 H 0.06 1.98 8.08 -2.38 -0.02 1.96 16 7 N -0.74 -35.77 5.12 -322.70 -1.65 -37.42 16 8 C -0.23 -12.30 9.93 84.03 0.83 -11.47 16 9 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 10 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 11 N -0.97 -59.31 13.06 21.65 0.28 -59.02 16 12 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 C -0.14 -4.28 5.66 30.69 0.17 -4.11 16 17 C 0.09 1.78 4.72 86.36 0.41 2.19 16 18 N -0.59 -14.85 2.97 -798.57 -2.37 -17.22 16 19 C 0.55 15.66 7.29 86.74 0.63 16.29 16 20 O -0.56 -19.75 11.32 -3.94 -0.04 -19.80 16 21 C -0.16 -3.56 5.46 -20.06 -0.11 -3.67 16 22 C -0.07 -0.87 7.39 22.53 0.17 -0.70 16 23 C -0.09 -0.55 10.03 22.23 0.22 -0.33 16 24 C -0.09 -0.87 10.01 22.35 0.22 -0.65 16 25 C 0.04 0.82 7.30 22.38 0.16 0.99 16 26 F -0.14 -3.13 17.18 44.97 0.77 -2.36 16 27 C 0.08 2.14 7.25 22.71 0.16 2.31 16 28 F -0.14 -4.61 15.90 44.97 0.72 -3.89 16 29 H 0.04 1.51 6.74 -2.39 -0.02 1.49 16 30 H 0.06 1.92 6.77 -2.39 -0.02 1.91 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 34 H 0.37 19.87 7.80 -92.71 -0.72 19.15 16 35 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 1.49 8.02 -2.38 -0.02 1.48 16 39 H 0.12 1.80 4.07 -2.39 -0.01 1.79 16 40 H 0.18 1.29 5.44 -2.91 -0.02 1.27 16 41 H 0.20 -0.46 8.06 -2.91 -0.02 -0.49 16 42 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -75.04 343.67 4.39 -70.64 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.34 Total: 22.07 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.32 Total: 0.41 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.74 Total: -113.67 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.04 Total: -19.80 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 1.49 Total: -6.25 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.04 4.39 -70.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044725708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.748 kcal (2) G-P(sol) polarization free energy of solvation -75.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds