Wall clock time and date at job start Tue Mar 31 2020 14:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.70084 * 2 1 4 4 C 1.53188 * 109.58971 * 120.35949 * 2 1 3 5 5 C 1.53043 * 109.31316 * 65.14730 * 4 2 1 6 6 H 1.08998 * 109.46179 * 301.34675 * 5 4 2 7 7 N 1.46505 * 109.46138 * 181.38389 * 5 4 2 8 8 C 1.36932 * 119.99866 * 154.99904 * 7 5 4 9 9 H 1.08000 * 120.00398 * 0.02562 * 8 7 5 10 10 C 1.38820 * 119.99558 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00229 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99472 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47405 * 59.99877 * 12 10 8 14 14 H 1.48500 * 109.46840 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47390 * 299.99546 * 12 10 8 16 16 C 1.53348 * 109.60431 * 61.37879 * 5 4 2 17 17 C 1.53189 * 109.14913 * 298.70795 * 16 5 4 18 18 N 1.46927 * 108.89419 * 54.57925 * 17 16 5 19 19 C 1.34777 * 120.63089 * 126.29434 * 18 17 16 20 20 O 1.21590 * 120.00108 * 175.81210 * 19 18 17 21 21 C 1.47575 * 120.00165 * 355.82013 * 19 18 17 22 22 C 1.39730 * 120.14047 * 54.24807 * 21 19 18 23 23 C 1.37736 * 119.90191 * 179.97438 * 22 21 19 24 24 C 1.38767 * 120.19343 * 0.02562 * 23 22 21 25 25 F 1.35101 * 119.85831 * 179.97438 * 24 23 22 26 26 C 1.38495 * 120.28266 * 359.97438 * 24 23 22 27 27 C 1.38197 * 120.09137 * 359.74449 * 26 24 23 28 28 F 1.35100 * 120.09615 * 180.27382 * 27 26 24 29 29 H 1.09002 * 109.46898 * 180.35442 * 1 2 3 30 30 H 1.09004 * 109.46874 * 300.35261 * 1 2 3 31 31 H 1.08991 * 109.47439 * 60.35169 * 1 2 3 32 32 H 1.08999 * 109.50122 * 185.10157 * 4 2 1 33 33 H 1.09004 * 109.49866 * 305.16786 * 4 2 1 34 34 H 0.97003 * 119.99545 * 335.01099 * 7 5 4 35 35 H 0.96999 * 119.99916 * 180.02562 * 11 10 8 36 36 H 1.09007 * 109.68487 * 178.74821 * 16 5 4 37 37 H 1.09001 * 109.47809 * 58.55050 * 16 5 4 38 38 H 1.09001 * 109.59118 * 294.72592 * 17 16 5 39 39 H 1.08998 * 109.59191 * 174.43605 * 17 16 5 40 40 H 1.07999 * 120.05184 * 359.96184 * 22 21 19 41 41 H 1.08003 * 119.90669 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.95135 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 1.6415 -2.2041 1.1700 6 1 0.5565 -2.2815 1.0992 7 7 2.1025 -2.8980 2.3752 8 6 1.4651 -4.0340 2.7972 9 1 0.6228 -4.4189 2.2415 10 6 1.9016 -4.6911 3.9395 11 7 2.9278 -4.2219 4.6171 12 14 1.0326 -6.2413 4.5148 13 1 1.1120 -7.2764 3.4530 14 1 1.6871 -6.7469 5.7482 15 1 -0.3918 -5.9334 4.8004 16 6 2.2807 -2.8494 -0.0656 17 6 1.7691 -2.1410 -1.3238 18 7 2.0225 -0.6995 -1.1946 19 6 2.6943 -0.0317 -2.1532 20 8 2.8316 1.1737 -2.0721 21 6 3.2633 -0.7634 -3.3016 22 6 2.4485 -1.5887 -4.0811 23 6 2.9846 -2.2689 -5.1521 24 6 4.3315 -2.1375 -5.4589 25 9 4.8503 -2.8083 -6.5106 26 6 5.1462 -1.3217 -4.6916 27 6 4.6194 -0.6292 -3.6179 28 9 5.4129 0.1709 -2.8727 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5083 -0.8930 32 1 3.1298 -0.6504 1.2912 33 1 1.6080 -0.2782 2.1368 34 1 2.8591 -2.5524 2.8742 35 1 3.2330 -4.6812 5.4150 36 1 2.0132 -3.9052 -0.1083 37 1 3.3647 -2.7503 -0.0076 38 1 0.6986 -2.3155 -1.4317 39 1 2.2923 -2.5269 -2.1987 40 1 1.4001 -1.6931 -3.8441 41 1 2.3548 -2.9065 -5.7549 42 1 6.1936 -1.2230 -4.9354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044839648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:43 Heat of formation + Delta-G solvation = -82.958167 kcal Electronic energy + Delta-G solvation = -27810.304620 eV Core-core repulsion = 23619.673513 eV Total energy + Delta-G solvation = -4190.631107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.42825 -49.25544 -40.66610 -38.76834 -37.51504 -34.60904 -32.94669 -31.86405 -31.30357 -30.71008 -29.32113 -27.35462 -24.76069 -23.89925 -23.71081 -22.90748 -21.82265 -20.70002 -18.80843 -18.39770 -17.77431 -17.43468 -17.06613 -16.47169 -16.11978 -16.06803 -15.59545 -15.05254 -14.91399 -14.89541 -14.60199 -14.26400 -14.04296 -13.71370 -13.52844 -13.39352 -12.91581 -12.89062 -12.69474 -12.60035 -12.23008 -11.99417 -11.80283 -11.62989 -11.32481 -10.96591 -10.90418 -10.80805 -10.50752 -10.26357 -9.99884 -9.77959 -9.67236 -9.47971 -9.13501 -8.92819 -8.59475 -7.01614 -5.80846 -3.10367 0.29087 0.57288 2.41840 2.76673 3.09267 3.40065 3.41712 3.44712 3.46118 3.93100 4.11539 4.20038 4.41000 4.53996 4.68324 4.93986 5.07848 5.18778 5.24703 5.27448 5.31491 5.41181 5.44676 5.51077 5.54078 5.57067 5.59457 5.69834 5.76352 5.85495 6.01007 6.12854 6.23084 6.24895 6.34086 6.41100 6.48157 6.56892 6.83630 6.99431 7.36423 7.63891 8.03832 8.37185 9.48392 10.05821 10.40324 11.41564 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.003336 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.708649 B = 8391.797496 C = 9235.170778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.097 0.903 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.097 3.903 18 N -0.590 5.590 19 C 0.562 3.438 20 O -0.532 6.532 21 C -0.167 4.167 22 C -0.031 4.031 23 C -0.168 4.168 24 C 0.148 3.852 25 F -0.127 7.127 26 C -0.197 4.197 27 C 0.178 3.822 28 F -0.115 7.115 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 5.836 -20.498 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.115 0.885 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.193 4.193 17 C -0.026 4.026 18 N -0.322 5.322 19 C 0.348 3.652 20 O -0.409 6.409 21 C -0.171 4.171 22 C -0.050 4.050 23 C -0.186 4.186 24 C 0.128 3.872 25 F -0.106 7.106 26 C -0.216 4.216 27 C 0.158 3.842 28 F -0.093 7.093 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.045 6.330 -20.365 21.352 hybrid contribution 0.212 -0.971 0.447 1.090 sum -0.833 5.360 -19.918 20.643 Atomic orbital electron populations 1.22141 0.94741 1.02864 1.02074 1.21258 0.94219 0.97096 0.83513 0.88526 1.22225 1.01468 0.97266 0.96347 1.20256 0.96777 0.89061 0.87026 0.93019 1.42428 1.37976 1.29316 1.26661 1.19173 1.10346 1.01212 1.06588 0.91226 1.24745 0.98440 0.99430 0.98144 1.69649 1.27532 1.41331 1.19448 0.86294 0.78840 0.83237 0.77943 1.21282 1.21705 1.21246 1.22743 1.01308 1.00497 0.94703 1.22115 1.01041 0.79178 1.00276 1.48170 1.54224 1.09732 1.20036 1.17896 0.78467 0.86806 0.81981 1.90811 1.59228 1.13548 1.77304 1.20082 0.93368 1.03271 1.00415 1.21058 1.00288 0.91598 0.92033 1.21141 0.93723 1.03692 1.00093 1.17461 0.91737 0.92563 0.85429 1.91557 1.87160 1.77862 1.53996 1.20984 1.02386 1.01166 0.97111 1.17173 0.87069 0.90163 0.89837 1.91606 1.72861 1.70246 1.74576 0.91548 0.91154 0.92788 0.91792 0.90324 0.78263 0.93408 0.90501 0.92194 0.91014 0.90137 0.83106 0.83208 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.03 37.16 0.34 -1.58 16 2 C 0.14 1.98 3.20 -67.60 -0.22 1.77 16 3 H 0.10 1.44 7.03 -51.93 -0.36 1.07 16 4 C -0.13 -2.16 5.02 -26.61 -0.13 -2.30 16 5 C 0.18 3.27 2.53 -67.73 -0.17 3.10 16 6 H 0.05 0.94 6.43 -51.93 -0.33 0.61 16 7 N -0.72 -17.30 5.12 -53.23 -0.27 -17.58 16 8 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 12 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.15 -2.43 5.69 -26.45 -0.15 -2.58 16 17 C 0.10 1.17 5.11 -3.71 -0.02 1.15 16 18 N -0.59 -7.96 2.68 -166.43 -0.45 -8.41 16 19 C 0.56 8.16 6.92 -12.45 -0.09 8.07 16 20 O -0.53 -9.45 16.28 5.29 0.09 -9.37 16 21 C -0.17 -1.98 4.89 -104.91 -0.51 -2.49 16 22 C -0.03 -0.26 7.42 -39.21 -0.29 -0.56 16 23 C -0.17 -1.24 10.01 -39.57 -0.40 -1.64 16 24 C 0.15 1.28 7.30 -39.29 -0.29 1.00 16 25 F -0.13 -1.14 17.26 2.25 0.04 -1.10 16 26 C -0.20 -1.86 9.99 -39.50 -0.39 -2.25 16 27 C 0.18 2.13 7.27 -38.97 -0.28 1.84 16 28 F -0.11 -1.62 16.65 2.25 0.04 -1.58 16 29 H 0.07 0.80 5.72 -51.93 -0.30 0.50 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.75 7.50 -51.93 -0.39 0.36 16 39 H 0.08 0.83 4.72 -51.93 -0.25 0.59 16 40 H 0.15 0.97 7.37 -52.49 -0.39 0.59 16 41 H 0.15 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -31.61 349.38 -7.70 -39.31 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.26 Total: 7.04 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.85 Total: -3.44 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.01 Total: -52.85 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.61 -7.70 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044839648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.644 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds