Wall clock time and date at job start Tue Mar 31 2020 14:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.70084 * 2 1 4 4 C 1.53188 * 109.58971 * 120.35949 * 2 1 3 5 5 C 1.53043 * 109.31316 * 65.14730 * 4 2 1 6 6 H 1.08998 * 109.46179 * 301.34675 * 5 4 2 7 7 N 1.46505 * 109.46138 * 181.38389 * 5 4 2 8 8 C 1.36932 * 119.99866 * 154.99904 * 7 5 4 9 9 H 1.08000 * 120.00398 * 0.02562 * 8 7 5 10 10 C 1.38820 * 119.99558 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00229 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99472 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47405 * 59.99877 * 12 10 8 14 14 H 1.48500 * 109.46840 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47390 * 299.99546 * 12 10 8 16 16 C 1.53348 * 109.60431 * 61.37879 * 5 4 2 17 17 C 1.53189 * 109.14913 * 298.70795 * 16 5 4 18 18 N 1.46927 * 108.89419 * 54.57925 * 17 16 5 19 19 C 1.34777 * 120.63089 * 126.29434 * 18 17 16 20 20 O 1.21590 * 120.00108 * 175.81210 * 19 18 17 21 21 C 1.47575 * 120.00165 * 355.82013 * 19 18 17 22 22 C 1.39730 * 120.14047 * 54.24807 * 21 19 18 23 23 C 1.37736 * 119.90191 * 179.97438 * 22 21 19 24 24 C 1.38767 * 120.19343 * 0.02562 * 23 22 21 25 25 F 1.35101 * 119.85831 * 179.97438 * 24 23 22 26 26 C 1.38495 * 120.28266 * 359.97438 * 24 23 22 27 27 C 1.38197 * 120.09137 * 359.74449 * 26 24 23 28 28 F 1.35100 * 120.09615 * 180.27382 * 27 26 24 29 29 H 1.09002 * 109.46898 * 180.35442 * 1 2 3 30 30 H 1.09004 * 109.46874 * 300.35261 * 1 2 3 31 31 H 1.08991 * 109.47439 * 60.35169 * 1 2 3 32 32 H 1.08999 * 109.50122 * 185.10157 * 4 2 1 33 33 H 1.09004 * 109.49866 * 305.16786 * 4 2 1 34 34 H 0.97003 * 119.99545 * 335.01099 * 7 5 4 35 35 H 0.96999 * 119.99916 * 180.02562 * 11 10 8 36 36 H 1.09007 * 109.68487 * 178.74821 * 16 5 4 37 37 H 1.09001 * 109.47809 * 58.55050 * 16 5 4 38 38 H 1.09001 * 109.59118 * 294.72592 * 17 16 5 39 39 H 1.08998 * 109.59191 * 174.43605 * 17 16 5 40 40 H 1.07999 * 120.05184 * 359.96184 * 22 21 19 41 41 H 1.08003 * 119.90669 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.95135 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 1.6415 -2.2041 1.1700 6 1 0.5565 -2.2815 1.0992 7 7 2.1025 -2.8980 2.3752 8 6 1.4651 -4.0340 2.7972 9 1 0.6228 -4.4189 2.2415 10 6 1.9016 -4.6911 3.9395 11 7 2.9278 -4.2219 4.6171 12 14 1.0326 -6.2413 4.5148 13 1 1.1120 -7.2764 3.4530 14 1 1.6871 -6.7469 5.7482 15 1 -0.3918 -5.9334 4.8004 16 6 2.2807 -2.8494 -0.0656 17 6 1.7691 -2.1410 -1.3238 18 7 2.0225 -0.6995 -1.1946 19 6 2.6943 -0.0317 -2.1532 20 8 2.8316 1.1737 -2.0721 21 6 3.2633 -0.7634 -3.3016 22 6 2.4485 -1.5887 -4.0811 23 6 2.9846 -2.2689 -5.1521 24 6 4.3315 -2.1375 -5.4589 25 9 4.8503 -2.8083 -6.5106 26 6 5.1462 -1.3217 -4.6916 27 6 4.6194 -0.6292 -3.6179 28 9 5.4129 0.1709 -2.8727 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5083 -0.8930 32 1 3.1298 -0.6504 1.2912 33 1 1.6080 -0.2782 2.1368 34 1 2.8591 -2.5524 2.8742 35 1 3.2330 -4.6812 5.4150 36 1 2.0132 -3.9052 -0.1083 37 1 3.3647 -2.7503 -0.0076 38 1 0.6986 -2.3155 -1.4317 39 1 2.2923 -2.5269 -2.1987 40 1 1.4001 -1.6931 -3.8441 41 1 2.3548 -2.9065 -5.7549 42 1 6.1936 -1.2230 -4.9354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044839648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:42 Heat of formation + Delta-G solvation = -101.727757 kcal Electronic energy + Delta-G solvation = -27811.118530 eV Core-core repulsion = 23619.673513 eV Total energy + Delta-G solvation = -4191.445018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.20956 -50.11322 -41.73881 -39.67643 -38.73768 -36.25444 -34.16131 -33.48755 -32.06639 -31.62644 -30.88355 -28.62224 -26.09314 -25.24235 -24.60698 -24.06905 -23.03700 -21.90092 -19.96875 -19.31440 -19.01886 -18.64663 -18.29738 -17.49548 -17.07170 -16.85161 -16.69426 -16.43059 -16.07782 -15.78305 -15.66268 -15.46369 -15.30063 -15.08934 -14.90077 -14.59026 -14.14767 -14.03029 -13.81703 -13.54750 -13.22387 -13.09505 -12.90566 -12.80047 -12.72094 -12.54695 -12.42394 -12.20428 -12.08164 -11.95797 -11.68931 -11.15702 -11.08642 -10.84374 -10.20136 -9.95076 -9.72224 -8.98521 -7.90628 -5.19510 -0.48662 -0.13120 1.37887 1.50321 1.52755 1.58669 1.79720 2.25088 2.59155 2.67057 3.15145 3.24661 3.42951 3.47542 3.73442 3.80812 3.84964 3.96229 4.02138 4.09683 4.23822 4.34587 4.50712 4.53765 4.59700 4.60082 4.65987 4.73805 4.76219 4.84011 4.86893 4.92759 5.02676 5.05964 5.07144 5.26081 5.33654 5.51588 5.55321 5.56457 5.61903 6.26751 6.30712 6.93609 7.36515 8.12438 8.35207 9.33055 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.003336 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.708649 B = 8391.797496 C = 9235.170778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.175 3.825 6 H 0.062 0.938 7 N -0.739 5.739 8 C -0.234 4.234 9 H 0.083 0.917 10 C -0.078 4.078 11 N -0.974 5.974 12 Si 0.970 3.030 13 H -0.276 1.276 14 H -0.302 1.302 15 H -0.277 1.277 16 C -0.143 4.143 17 C 0.104 3.896 18 N -0.588 5.588 19 C 0.560 3.440 20 O -0.573 6.573 21 C -0.185 4.185 22 C -0.023 4.023 23 C -0.147 4.147 24 C 0.148 3.852 25 F -0.127 7.127 26 C -0.194 4.194 27 C 0.149 3.851 28 F -0.138 7.138 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.368 0.632 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.180 0.820 41 H 0.186 0.814 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 4.407 -23.230 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.103 0.897 4 C -0.164 4.164 5 C 0.067 3.933 6 H 0.079 0.921 7 N -0.378 5.378 8 C -0.366 4.366 9 H 0.101 0.899 10 C -0.270 4.270 11 N -0.625 5.625 12 Si 0.800 3.200 13 H -0.202 1.202 14 H -0.229 1.229 15 H -0.203 1.203 16 C -0.184 4.184 17 C -0.018 4.018 18 N -0.319 5.319 19 C 0.349 3.651 20 O -0.453 6.453 21 C -0.189 4.189 22 C -0.042 4.042 23 C -0.166 4.166 24 C 0.128 3.872 25 F -0.105 7.105 26 C -0.213 4.213 27 C 0.129 3.871 28 F -0.117 7.117 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.199 0.801 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.197 0.803 41 H 0.204 0.796 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.352 4.893 -23.157 23.905 hybrid contribution 0.942 -0.492 1.196 1.600 sum -2.410 4.401 -21.962 22.528 Atomic orbital electron populations 1.22079 0.92468 1.03388 1.03054 1.21152 0.95843 0.96082 0.82664 0.89735 1.22094 1.00166 0.96427 0.97693 1.20506 0.97246 0.89663 0.85885 0.92052 1.42686 1.37473 1.29239 1.28396 1.19623 1.09828 1.01227 1.05915 0.89920 1.25549 0.99647 1.02816 0.98974 1.69826 1.29687 1.42954 1.20015 0.85252 0.77874 0.79868 0.77024 1.20202 1.22889 1.20267 1.22535 0.99790 1.00466 0.95589 1.22199 1.03027 0.77695 0.98841 1.48218 1.53876 1.10254 1.19562 1.18321 0.77689 0.86480 0.82641 1.90783 1.60579 1.15508 1.78471 1.20042 0.93692 1.04728 1.00478 1.21358 1.01095 0.90290 0.91427 1.21508 0.93246 1.02583 0.99223 1.17594 0.92312 0.92137 0.85130 1.91568 1.87289 1.77733 1.53897 1.21088 1.03275 1.00681 0.96303 1.17486 0.87360 0.91321 0.90965 1.91543 1.73527 1.71205 1.75383 0.91088 0.90601 0.91496 0.93867 0.90760 0.80084 0.94281 0.90973 0.94437 0.87915 0.87672 0.80296 0.79626 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.03 71.98 0.65 -2.63 16 2 C 0.15 3.97 3.20 44.97 0.14 4.11 16 3 H 0.08 2.55 7.03 -2.39 -0.02 2.53 16 4 C -0.12 -4.08 5.02 30.67 0.15 -3.92 16 5 C 0.18 6.28 2.53 45.12 0.11 6.39 16 6 H 0.06 2.11 6.43 -2.39 -0.02 2.09 16 7 N -0.74 -35.72 5.12 -322.31 -1.65 -37.38 16 8 C -0.23 -12.33 9.93 84.04 0.83 -11.49 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 11 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 12 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 C -0.14 -4.41 5.69 30.77 0.18 -4.24 16 17 C 0.10 2.21 5.11 86.36 0.44 2.66 16 18 N -0.59 -15.02 2.68 -798.71 -2.14 -17.16 16 19 C 0.56 15.88 6.92 86.71 0.60 16.48 16 20 O -0.57 -20.72 16.28 -4.00 -0.07 -20.78 16 21 C -0.19 -4.10 4.89 -20.05 -0.10 -4.20 16 22 C -0.02 -0.31 7.42 22.51 0.17 -0.14 16 23 C -0.15 -1.52 10.01 22.28 0.22 -1.30 16 24 C 0.15 2.12 7.30 22.46 0.16 2.29 16 25 F -0.13 -1.87 17.26 44.97 0.78 -1.10 16 26 C -0.19 -3.40 9.99 22.32 0.22 -3.18 16 27 C 0.15 3.51 7.27 22.66 0.16 3.68 16 28 F -0.14 -4.08 16.65 44.97 0.75 -3.34 16 29 H 0.07 1.47 5.72 -2.39 -0.01 1.46 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.65 7.50 -2.39 -0.02 1.63 16 39 H 0.11 1.77 4.72 -2.39 -0.01 1.76 16 40 H 0.18 1.33 7.37 -2.91 -0.02 1.31 16 41 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -71.22 349.38 4.74 -66.48 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.34 Total: 24.78 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 4.42 Total: 0.63 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -3.51 Total: -113.41 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.07 Total: -20.78 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 1.53 Total: -4.43 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.22 4.74 -66.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044839648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.248 kcal (2) G-P(sol) polarization free energy of solvation -71.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds