Wall clock time and date at job start Tue Mar 31 2020 14:52:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 110.88719 * 2 1
4 4 C 1.55127 * 110.90975 * 124.10099 * 2 1 3
5 5 N 1.47430 * 104.72411 * 155.27354 * 4 2 1
6 6 C 1.34768 * 125.64655 * 155.81613 * 5 4 2
7 7 O 1.21283 * 120.00549 * 359.71366 * 6 5 4
8 8 C 1.50707 * 119.99882 * 179.71452 * 6 5 4
9 9 C 1.50694 * 109.47023 * 179.97438 * 8 6 5
10 10 C 1.38233 * 119.98636 * 100.00235 * 9 8 6
11 11 C 1.38191 * 120.05084 * 179.97438 * 10 9 8
12 12 C 1.38491 * 120.02630 * 0.28397 * 11 10 9
13 13 F 1.35097 * 120.01430 * 179.74880 * 12 11 10
14 14 C 1.38408 * 119.97177 * 359.48296 * 12 11 10
15 15 C 1.38433 * 119.95015 * 0.49160 * 14 12 11
16 16 F 1.35102 * 120.01397 * 179.79013 * 15 14 12
17 17 C 1.47020 * 108.70188 * 335.55186 * 5 4 2
18 18 C 1.54326 * 107.27208 * 1.28983 * 17 5 4
19 19 H 1.09000 * 110.72258 * 140.55715 * 18 17 5
20 20 N 1.46508 * 110.72009 * 263.82973 * 18 17 5
21 21 C 1.36935 * 119.99861 * 273.54537 * 20 18 17
22 22 H 1.07999 * 119.99894 * 0.02562 * 21 20 18
23 23 C 1.38814 * 120.00204 * 179.97438 * 21 20 18
24 24 N 1.31619 * 119.99517 * 0.02562 * 23 21 20
25 25 Si 1.86789 * 120.00249 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47297 * 0.02562 * 25 23 21
27 27 H 1.48506 * 109.47151 * 120.00532 * 25 23 21
28 28 H 1.48498 * 109.47172 * 240.00336 * 25 23 21
29 29 H 1.08997 * 109.47048 * 183.87993 * 1 2 3
30 30 H 1.09001 * 109.47131 * 303.87368 * 1 2 3
31 31 H 1.08998 * 109.47564 * 63.87359 * 1 2 3
32 32 H 1.08996 * 110.49631 * 36.43049 * 4 2 1
33 33 H 1.09001 * 110.33988 * 274.03584 * 4 2 1
34 34 H 1.09004 * 109.46681 * 60.00089 * 8 6 5
35 35 H 1.08990 * 109.47301 * 300.00278 * 8 6 5
36 36 H 1.07993 * 119.97364 * 0.02562 * 10 9 8
37 37 H 1.08002 * 119.98388 * 179.97438 * 11 10 9
38 38 H 1.08002 * 120.02149 * 180.25988 * 14 12 11
39 39 H 1.08997 * 109.88367 * 120.70277 * 17 5 4
40 40 H 1.09000 * 109.88246 * 241.71731 * 17 5 4
41 41 H 0.97001 * 119.99708 * 93.53944 * 20 18 17
42 42 H 0.96998 * 119.99741 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9186 1.0184 0.0000
4 6 2.0836 -0.8125 1.1999
5 7 3.4272 -1.2434 0.7726
6 6 4.4477 -1.5623 1.5931
7 8 4.3010 -1.5012 2.7955
8 6 5.7712 -1.9948 1.0166
9 6 6.7344 -2.2911 2.1370
10 6 6.9618 -3.5982 2.5251
11 6 7.8452 -3.8714 3.5521
12 6 8.4993 -2.8354 4.1976
13 9 9.3591 -3.1025 5.2049
14 6 8.2761 -1.5266 3.8066
15 6 7.3913 -1.2540 2.7774
16 9 7.1692 0.0233 2.3976
17 6 3.4674 -1.2739 -0.6967
18 6 2.0861 -0.8074 -1.2026
19 1 2.1920 -0.1690 -2.0798
20 7 1.2266 -1.9568 -1.4971
21 6 1.2813 -2.5551 -2.7276
22 1 1.9582 -2.1799 -3.4808
23 6 0.4674 -3.6445 -3.0065
24 7 -0.3572 -4.1019 -2.0882
25 14 0.5425 -4.4611 -4.6847
26 1 1.5432 -3.7626 -5.5308
27 1 0.9363 -5.8841 -4.5256
28 1 -0.7920 -4.3862 -5.3318
29 1 -0.3633 -1.0253 0.0695
30 1 -0.3633 0.5728 0.8532
31 1 -0.3634 0.4525 -0.9226
32 1 1.4524 -1.6787 1.3980
33 1 2.1516 -0.1811 2.0859
34 1 6.1741 -1.1966 0.3931
35 1 5.6290 -2.8909 0.4127
36 1 6.4493 -4.4064 2.0248
37 1 8.0217 -4.8930 3.8547
38 1 8.7890 -0.7183 4.3067
39 1 4.2425 -0.5993 -1.0604
40 1 3.6676 -2.2884 -1.0411
41 1 0.6190 -2.2939 -0.8203
42 1 -0.9262 -4.8629 -2.2832
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054680434.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:52:59
Heat of formation + Delta-G solvation = -86.420939 kcal
Electronic energy + Delta-G solvation = -27218.685131 eV
Core-core repulsion = 23027.903867 eV
Total energy + Delta-G solvation = -4190.781264 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 324.139 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-49.21131 -49.12287 -40.05303 -38.96264 -37.51158 -33.97764 -32.99894 -32.23863
-31.01049 -30.52251 -28.06075 -27.67715 -25.62631 -23.90787 -23.42240 -22.53005
-21.77725 -19.33362 -18.99870 -18.36792 -17.61324 -17.44671 -16.81164 -16.24426
-16.04452 -15.80495 -15.59359 -15.43683 -14.92506 -14.60652 -14.54500 -14.35729
-14.02351 -13.79247 -13.31153 -13.00737 -12.98608 -12.69665 -12.31377 -12.17825
-11.95606 -11.95026 -11.85706 -11.58904 -11.52561 -11.15484 -10.98455 -10.81441
-10.50988 -10.27629 -9.96541 -9.77541 -9.67931 -9.26139 -9.06984 -8.78654
-8.28515 -7.11887 -5.88993 -3.19215 0.72313 0.81673 2.84063 3.02551
3.35442 3.40831 3.41758 3.43902 3.67158 4.20547 4.34113 4.37380
4.48139 4.61338 4.70072 4.88302 5.10569 5.14078 5.22378 5.33159
5.36730 5.47793 5.56493 5.59924 5.61785 5.73294 5.74750 5.81480
5.90097 5.92994 6.01673 6.14992 6.22227 6.31057 6.32809 6.48579
6.53955 6.59464 6.70989 6.89271 7.59429 7.83819 8.28782 8.38298
9.40950 9.95636 10.30427 11.33106
Molecular weight = 324.14amu
Principal moments of inertia in cm(-1)
A = 0.016706 B = 0.002955 C = 0.002684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1675.619945 B = 9473.154523 C =10431.451582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.114 4.114
3 H 0.079 0.921
4 C 0.116 3.884
5 N -0.605 5.605
6 C 0.529 3.471
7 O -0.549 6.549
8 C -0.099 4.099
9 C -0.104 4.104
10 C -0.050 4.050
11 C -0.162 4.162
12 C 0.125 3.875
13 F -0.134 7.134
14 C -0.193 4.193
15 C 0.148 3.852
16 F -0.128 7.128
17 C 0.069 3.931
18 C 0.172 3.828
19 H 0.070 0.930
20 N -0.712 5.712
21 C -0.247 4.247
22 H 0.073 0.927
23 C -0.009 4.009
24 N -0.928 5.928
25 Si 0.907 3.093
26 H -0.280 1.280
27 H -0.292 1.292
28 H -0.291 1.291
29 H 0.069 0.931
30 H 0.044 0.956
31 H 0.060 0.940
32 H 0.070 0.930
33 H 0.068 0.932
34 H 0.106 0.894
35 H 0.112 0.888
36 H 0.145 0.855
37 H 0.143 0.857
38 H 0.147 0.853
39 H 0.055 0.945
40 H 0.078 0.922
41 H 0.387 0.613
42 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.874 5.318 8.182 17.789
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.134 4.134
3 H 0.097 0.903
4 C -0.007 4.007
5 N -0.338 5.338
6 C 0.317 3.683
7 O -0.427 6.427
8 C -0.138 4.138
9 C -0.105 4.105
10 C -0.068 4.068
11 C -0.181 4.181
12 C 0.105 3.895
13 F -0.113 7.113
14 C -0.212 4.212
15 C 0.128 3.872
16 F -0.106 7.106
17 C -0.057 4.057
18 C 0.060 3.940
19 H 0.088 0.912
20 N -0.354 5.354
21 C -0.377 4.377
22 H 0.091 0.909
23 C -0.205 4.205
24 N -0.576 5.576
25 Si 0.738 3.262
26 H -0.205 1.205
27 H -0.219 1.219
28 H -0.218 1.218
29 H 0.088 0.912
30 H 0.063 0.937
31 H 0.079 0.921
32 H 0.088 0.912
33 H 0.087 0.913
34 H 0.124 0.876
35 H 0.130 0.870
36 H 0.163 0.837
37 H 0.161 0.839
38 H 0.165 0.835
39 H 0.074 0.926
40 H 0.096 0.904
41 H 0.223 0.777
42 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 14.883 5.301 8.693 18.033
hybrid contribution -0.014 -0.504 -0.621 0.800
sum 14.869 4.797 8.072 17.585
Atomic orbital electron populations
1.21545 0.93377 1.02972 1.01001 1.22656 0.96970 0.98449 0.95323
0.90285 1.22306 0.82748 0.98338 0.97277 1.48418 1.11863 1.65679
1.07858 1.19929 0.84620 0.77533 0.86245 1.90692 1.83290 1.54190
1.14545 1.20570 0.91865 1.04820 0.96583 1.19485 0.98867 0.92898
0.99272 1.20817 0.95349 0.95580 0.95057 1.21157 0.99352 0.99363
0.98247 1.17276 0.91490 0.92964 0.87728 1.91519 1.67532 1.94583
1.57641 1.20949 1.03016 0.96942 1.00330 1.17065 0.96397 0.78839
0.94900 1.91525 1.93331 1.35729 1.90016 1.23321 1.01674 1.02230
0.78485 1.21195 0.88274 0.89853 0.94673 0.91179 1.42472 1.45414
1.32778 1.14706 1.19263 1.18555 1.09372 0.90549 0.90933 1.24756
0.98941 0.98904 0.97929 1.69666 1.27291 1.27496 1.33141 0.86133
0.77283 0.79200 0.83609 1.20486 1.21868 1.21833 0.91205 0.93655
0.92080 0.91194 0.91330 0.87621 0.86998 0.83714 0.83930 0.83531
0.92641 0.90358 0.77715 0.93404
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.01 8.85 37.15 0.33 -1.68 16
2 C -0.11 -1.73 3.53 -88.35 -0.31 -2.04 16
3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
4 C 0.12 1.88 6.35 -2.41 -0.02 1.86 16
5 N -0.61 -9.82 3.32 -170.38 -0.57 -10.38 16
6 C 0.53 8.59 7.84 -10.99 -0.09 8.51 16
7 O -0.55 -10.63 16.20 5.56 0.09 -10.54 16
8 C -0.10 -1.22 4.75 -29.03 -0.14 -1.35 16
9 C -0.10 -1.27 4.43 -104.55 -0.46 -1.73 16
10 C -0.05 -0.52 9.66 -39.60 -0.38 -0.90 16
11 C -0.16 -1.59 10.02 -39.51 -0.40 -1.98 16
12 C 0.12 1.34 7.30 -39.43 -0.29 1.06 16
13 F -0.13 -1.45 17.27 2.25 0.04 -1.41 16
14 C -0.19 -2.14 10.01 -39.45 -0.39 -2.53 16
15 C 0.15 1.86 7.12 -39.43 -0.28 1.58 16
16 F -0.13 -1.72 16.66 2.25 0.04 -1.68 16
17 C 0.07 1.08 6.22 -3.06 -0.02 1.06 16
18 C 0.17 3.01 3.37 -66.09 -0.22 2.78 16
19 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16
20 N -0.71 -15.91 4.61 -51.64 -0.24 -16.14 16
21 C -0.25 -6.21 9.98 -15.06 -0.15 -6.36 16
22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16
23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16
24 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16
25 Si 0.91 21.09 29.55 -169.99 -5.02 16.06 16
26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
29 H 0.07 1.24 6.37 -51.93 -0.33 0.91 16
30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
32 H 0.07 1.25 7.99 -51.93 -0.41 0.83 16
33 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16
34 H 0.11 1.15 7.94 -51.93 -0.41 0.74 16
35 H 0.11 1.19 8.00 -51.93 -0.42 0.78 16
36 H 0.15 1.23 8.04 -52.49 -0.42 0.81 16
37 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16
38 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16
39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16
41 H 0.39 9.36 6.10 -40.82 -0.25 9.11 16
42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
LS Contribution 360.40 15.07 5.43 5.43
Total: -1.00 -30.36 360.40 -8.01 -38.37
By element:
Atomic # 1 Polarization: 13.65 SS G_CDS: -5.58 Total: 8.06 kcal
Atomic # 6 Polarization: 0.86 SS G_CDS: -2.92 Total: -2.05 kcal
Atomic # 7 Polarization: -52.16 SS G_CDS: -0.08 Total: -52.24 kcal
Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal
Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.10 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -30.36 -8.01 -38.37 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054680434.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.052 kcal
(2) G-P(sol) polarization free energy of solvation -30.363 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.415 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds